PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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7BV9	The NMR structure of the BEN domain from human NAC1 分子名称: Nucleus accumbens-associated protein 1 著者 Nagata, T, Kobayashi, N, Nakayama, N, Obayashi, E, Urano, T. 登録日 2020-04-09 公開日 2021-02-17 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Nucleus Accumbens-Associated Protein 1 Binds DNA Directly through the BEN Domain in a Sequence-Specific Manner. Biomedicines, 8, 2020
6K07	Crystal structure of REV7(R124A) in complex with a Shieldin3 fragment 分子名称: Mitotic spindle assembly checkpoint protein MAD2B, SULFATE ION, Shieldin complex subunit 3 著者 Zhang, F, Dai, Y. 登録日 2019-05-05 公開日 2019-12-11 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.24 Å) 主引用文献 Structural basis for shieldin complex subunit 3-mediated recruitment of the checkpoint protein REV7 during DNA double-strand break repair. J.Biol.Chem., 295, 2020
2OWL	Crystal structure of E. coli RdgC 分子名称: CALCIUM ION, Recombination-associated protein rdgC 著者 Briggs, G.S, McEwan, P.A, Yu, J, Moore, T, Emsley, J, Lloyd, R.G. 登録日 2007-02-16 公開日 2007-03-20 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Ring Structure of the Escherichia coli DNA-binding Protein RdgC Associated with Recombination and Replication Fork Repair. J.Biol.Chem., 282, 2007
2K4J	ArsR DNA Binding Domain 分子名称: Putative TRANSCRIPTIONAL REGULATOR 著者 Gupta, S.S, Cover, T.L, Krezel, A.M. 登録日 2008-06-11 公開日 2008-12-30 最終更新日 2024-05-08 実験手法 SOLUTION NMR 主引用文献 ArsR DNA Binding Domain To be Published
2L4M	Solution structure of the Zbeta domain of human DAI and its binding modes to B- and Z-DNA 分子名称: Uncharacterized protein 著者 Kim, K, Khayrutdinov, B.I, Jeon, Y.H, Kim, K.K. 登録日 2010-10-08 公開日 2011-04-13 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structure of the Zbeta domain of human DNA-dependent activator of IFN-regulatory factors and its binding modes to B- and Z-DNA Proc.Natl.Acad.Sci.USA, 2011
2QBY	Crystal structure of a heterodimer of Cdc6/Orc1 initiators bound to origin DNA (from S. solfataricus) 分子名称: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 6 homolog 1, Cell division control protein 6 homolog 3, ... 著者 Cunningham Dueber, E.L, Corn, J.E, Bell, S.D, Berger, J.M. 登録日 2007-06-18 公開日 2007-09-11 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.35 Å) 主引用文献 Replication origin recognition and deformation by a heterodimeric archaeal Orc1 complex. Science, 317, 2007
6RYK	Crystal structure of the ParB-like protein PadC 分子名称: CYTIDINE-5'-TRIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ... 著者 Altegoer, F, Bange, G. 登録日 2019-06-10 公開日 2020-01-22 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 ParB-type DNA Segregation Proteins Are CTP-Dependent Molecular Switches. Cell, 179, 2019
2DIM	Solution structure of the Myb_DNA-binding domain of human Cell division cycle 5-like protein 分子名称: Cell division cycle 5-like protein 著者 Yoneyama, M, Tochio, N, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-03-30 公開日 2007-04-03 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of the Myb_DNA-binding domain of human Cell division cycle 5-like protein To be Published
2DIN	Solution structure of the Myb_DNA-binding domain of human Cell division cycle 5-like protein 分子名称: Cell division cycle 5-like protein 著者 Yoneyama, M, Tochio, N, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-03-30 公開日 2007-04-03 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of the Myb_DNA-binding domain of human Cell division cycle 5-like protein To be Published
8OJ1	Crystal structure of the DNA binding domain of M. polymorpha Auxin Response Factor 2 (MpARF2) in complex with High Affinity DNA 分子名称: Auxin response factor, CHLORIDE ION, HA7 著者 Crespo, I, Weijers, D, Boer, D.R. 登録日 2023-03-23 公開日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.57 Å) 主引用文献 Crystal structure of the DNA binding domain of M. polymorpha Auxin Response Factor 2 (MpARF2) in complex with High Affinity DNA To Be Published
8EJO	Crystal structure of the homeodomain of Platypus sDUX in complex with DNA 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*GP*CP*GP*TP*AP*AP*TP*CP*TP*AP*AP*TP*CP*AP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*TP*GP*AP*TP*TP*AP*GP*AP*TP*TP*AP*CP*GP*C)-3'), ... 著者 Yin, L.L, Shi, K, Aihara, H. 登録日 2022-09-18 公開日 2023-09-20 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.67 Å) 主引用文献 Antagonism among DUX family members evolved from an ancestral toxic single homeodomain protein. Iscience, 26, 2023
8EJP	Crystal structure of the homeodomain of Platypus sDUX in complex with DNA containing 5-Bromouracil 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*GP*CP*GP*TP*AP*AP*TP*CP*TP*AP*AP*TP*CP*AP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*TP*GP*AP*TP*TP*AP*GP*AP*TP*TP*AP*CP*GP*C)-3'), ... 著者 Yin, L.L, Shi, K, Aihara, H. 登録日 2022-09-18 公開日 2023-09-20 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.174 Å) 主引用文献 Antagonism among DUX family members evolved from an ancestral toxic single homeodomain protein. Iscience, 26, 2023
6ANV	Crystal structure of anti-CRISPR protein AcrF1 分子名称: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, ... 著者 Yang, H, Patel, D.J. 登録日 2017-08-14 公開日 2017-10-25 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.265 Å) 主引用文献 Cryo-EM Structures Reveal Mechanism and Inhibition of DNA Targeting by a CRISPR-Cas Surveillance Complex. Cell, 171, 2017
3FCK	Complex of UNG2 and a fragment-based design inhibitor 分子名称: 3-({[3-({[(1E)-(2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)methylidene]amino}oxy)propyl]amino}methyl)benzoic acid, Uracil-DNA glycosylase 著者 Bianchet, M.A, Chung, S, Parker, J.B, Amzel, L.M, Stivers, J.T. 登録日 2008-11-21 公開日 2009-04-28 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.64 Å) 主引用文献 Impact of linker strain and flexibility in the design of a fragment-based inhibitor Nat.Chem.Biol., 5, 2009
7ECW	The Csy-AcrIF14-dsDNA complex 分子名称: 54-MER DNA, AcrIF14, CRISPR type I-F/YPEST-associated protein Csy2, ... 著者 Zhang, L.X, Feng, Y. 登録日 2021-03-13 公開日 2021-11-17 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Insights into the dual functions of AcrIF14 during the inhibition of type I-F CRISPR-Cas surveillance complex. Nucleic Acids Res., 49, 2021
1AE9	STRUCTURE OF THE LAMBDA INTEGRASE CATALYTIC CORE 分子名称: LAMBDA INTEGRASE 著者 Kwon, H.J, Tirumalai, R, Landy, A, Ellenberger, T. 登録日 1997-03-06 公開日 1997-11-19 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Flexibility in DNA recombination: structure of the lambda integrase catalytic core. Science, 276, 1997
1F0O	PVUII ENDONUCLEASE/COGNATE DNA COMPLEX (GLUTARALDEHYDE-CROSSLINKED CRYSTAL) AT PH 7.5 WITH TWO CALCIUM IONS AT EACH ACTIVE SITE 分子名称: (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C-3'), CALCIUM ION, TYPE II RESTRICTION ENZYME PVUII 著者 Horton, J.R, Cheng, X. 登録日 2000-05-16 公開日 2000-11-06 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 PvuII endonuclease contains two calcium ions in active sites. J.Mol.Biol., 300, 2000
378D	STRUCTURE OF THE SIDE-BY-SIDE BINDING OF DISTAMYCIN TO DNA 分子名称: DISTAMYCIN A, DNA (5'-D(*GP*TP*AP*TP*AP*TP*AP*C)-3'), SODIUM ION 著者 Mitra, S.N, Wahl, M.C, Sundaralingam, M. 登録日 1998-01-28 公開日 1999-03-04 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure of the side-by-side binding of distamycin to d(GTATATAC)2. Acta Crystallogr.,Sect.D, 55, 1999
2H7G	Structure of variola topoisomerase non-covalently bound to DNA 分子名称: 5'-D(*TP*AP*AP*TP*AP*AP*GP*GP*GP*CP*GP*AP*CP*A)-3', 5'-D(*TP*TP*GP*TP*CP*GP*CP*CP*CP*TP*TP*A)-3', DNA topoisomerase 1 著者 Perry, K, Hwang, Y, Bushman, F.D, Van Duyne, G.D. 登録日 2006-06-02 公開日 2006-08-15 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural basis for specificity in the poxvirus topoisomerase. Mol.Cell, 23, 2006
7QV1	Bacillus subtilis collided disome (Leading 70S) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Filbeck, S, Pfeffer, S. 登録日 2022-01-19 公開日 2022-03-09 最終更新日 2022-03-30 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Bacterial ribosome collision sensing by a MutS DNA repair ATPase paralogue. Nature, 603, 2022
7QV2	Bacillus subtilis collided disome (Collided 70S) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Filbeck, S, Pfeffer, S. 登録日 2022-01-19 公開日 2022-03-09 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Bacterial ribosome collision sensing by a MutS DNA repair ATPase paralogue. Nature, 603, 2022
3FCI	Complex of UNG2 and a fragment-based designed inhibitor 分子名称: 3-{(E)-[(3-{[(2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)methyl]amino}propoxy)imino]methyl}benzoic acid, SODIUM ION, THIOCYANATE ION, ... 著者 Bianchet, M.A, Chung, S, Parker, J.B, Amzel, L.M, Stivers, J.T. 登録日 2008-11-21 公開日 2009-04-28 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.27 Å) 主引用文献 Impact of linker strain and flexibility in the design of a fragment-based inhibitor Nat.Chem.Biol., 5, 2009
3MIS	I-MsoI re-designed for altered DNA cleavage specificity (-8G) 分子名称: CALCIUM ION, DNA (5'-D(*CP*GP*GP*AP*GP*CP*TP*GP*TP*CP*TP*CP*AP*CP*GP*AP*CP*GP*TP*CP*CP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*GP*GP*AP*CP*GP*TP*CP*GP*TP*GP*AP*GP*AP*CP*AP*GP*CP*TP*CP*CP*G)-3'), ... 著者 Taylor, G.K, Stoddard, B.L. 登録日 2010-04-12 公開日 2010-05-19 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs. Nucleic Acids Res., 38, 2010
4ATI	MITF:M-box complex 分子名称: 5'-D(*AP*GP*GP*GP*TP*CP*AP*TP*GP*TP*GP*CP*TP*AP*AP*C)-3', 5'-D(*GP*TP*TP*AP*GP*CP*AP*CP*AP*TP*GP*AP*CP*CP*CP*T)-3', MICROPHTHALMIA-ASSOCIATED TRANSCRIPTION FACTOR 著者 Pogenberg, V, Deineko, V, Wilmanns, M. 登録日 2012-05-08 公開日 2012-12-12 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Restricted Leucine Zipper Dimerization and Specificity of DNA Recognition of the Melanocyte Master Regulator Mitf Genes Dev., 26, 2012
1EDR	MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG) AT 1.6 ANGSTROM 分子名称: 5'-D(*CP*GP*CP*GP*(A47)AP*AP*TP*TP*CP*GP*CP*G)-3', MAGNESIUM ION, SPERMINE 著者 Chatake, T, Hikima, T, Ono, A, Ueno, Y, Matsuda, A, Takenaka, A. 登録日 2000-01-28 公開日 2000-02-16 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Crystallographic studies on damaged DNAs. II. N(6)-methoxyadenine can present two alternate faces for Watson-Crick base-pairing, leading to pyrimidine transition mutagenesis. J.Mol.Biol., 294, 1999

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