PDB: 46200 件ウェブページステータス検索Chemie searchBIRD

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5M1N	Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Manganese 分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MANGANESE (II) ION, Phage terminase large subunit, ... 著者 Xu, R.G, Jenkins, H.T, Chechik, M, Blagova, E.V, Greive, S.J, Antson, A.A. 登録日 2016-10-09 公開日 2016-10-26 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Viral genome packaging terminase cleaves DNA using the canonical RuvC-like two-metal catalysis mechanism. Nucleic Acids Res., 45, 2017
1RM1	Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex 分子名称: 5'-D(*AP*TP*CP*GP*AP*TP*CP*GP*AP*TP*AP*TP*AP*AP*AP*AP*CP*G)-3', 5'-D(P*CP*GP*TP*TP*TP*TP*AP*TP*AP*TP*CP*GP*AP*TP*CP*GP*AP*T)-3', TATA-box binding protein, ... 著者 Jin, X, Gewirth, D.T, Geiger, J.H. 登録日 2003-11-26 公開日 2005-07-26 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 High Resolution Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex TO BE PUBLISHED
5C8E	Crystal structure of Thermus thermophilus CarH bound to adenosylcobalamin and a 26-bp DNA segment 分子名称: 26-mer DNA segment containing the CarH operator sequence (antisense strand), 26-mer DNA segment containing the CarH operator sequence (sense strand), 5'-DEOXYADENOSINE, ... 著者 Jost, M, Drennan, C.L. 登録日 2015-06-25 公開日 2015-09-30 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.89 Å) 主引用文献 Structural basis for gene regulation by a B12-dependent photoreceptor. Nature, 526, 2015
2XY6	Crystal structure of a salicylic aldehyde basepair in complex with fragment DNA polymerase I from Bacillus stearothermophilus 分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 5'-D(*AP*GP*GP*GP*AP*SAYP*GP*GP*TP*CP)-3', ... 著者 Kaul, C, Mueller, M, Wagner, M, Schneider, S, Carell, T. 登録日 2010-11-15 公開日 2011-07-27 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Reversible Bond Formation Enables the Replication and Amplification of a Crosslinking Salen Complex as an Orthogonal Base Pair. Nature Chem., 3, 2011
4A0L	Structure of DDB1-DDB2-CUL4B-RBX1 bound to a 12 bp abasic site containing DNA-duplex 分子名称: 12 BP DNA DUPLEX, 12 BP THF CONTAINING DNA DUPLEX, CULLIN-4B, ... 著者 Fischer, E.S, Scrima, A, Gut, H, Thoma, N.H. 登録日 2011-09-09 公開日 2011-12-14 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (7.4 Å) 主引用文献 The Molecular Basis of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, and Activation. Cell(Cambridge,Mass.), 147, 2011
2XY5	Crystal structure of an artificial salen-copper basepair in complex with fragment DNA polymerase I from Bacillus stearothermophilus 分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, 5'-D(*AP*GP*GP*GP*AP*SAYP*GP*GP*TP*CP)-3', 5'-D(*GP*AP*CP*CP*SAYP*TP*CP*CP*CP*TP)-3', ... 著者 Kaul, C, Mueller, M, Wagner, M, Schneider, S, Carell, T. 登録日 2010-11-15 公開日 2011-07-27 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.22 Å) 主引用文献 Reversible Bond Formation Enables the Replication and Amplification of a Crosslinking Salen Complex as an Orthogonal Base Pair. Nature Chem., 3, 2011
2XO7	Crystal structure of a dA:O-allylhydroxylamine-dC basepair in complex with fragment DNA polymerase I from Bacillus stearothermophilus 分子名称: 5'-D(*AP*GP*GP*AP*AP*TP*GP*GP*TP*CP*A)-3', 5'-D(*GP*AP*CP*CP*AP*TP*47C*CP*CP*T)-3', DNA POLYMERASE I, ... 著者 Muenzel, M, Lercher, L, Mueller, M, Carell, T. 登録日 2010-08-10 公開日 2010-09-15 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Chemical Discrimination between Dc and 5Medc Via Their Hydroxylamine Adducts Nucleic Acids Res., 38, 2010
5M1K	Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Magnesium 分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MAGNESIUM ION, Phage terminase large subunit, ... 著者 Xu, R.G, Jenkins, H.T, Chechik, M, Blagova, E.V, Greive, S.J, Antson, A.A. 登録日 2016-10-09 公開日 2016-10-26 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Viral genome packaging terminase cleaves DNA using the canonical RuvC-like two-metal catalysis mechanism. Nucleic Acids Res., 45, 2017
5M1P	Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Calcium 分子名称: CALCIUM ION, Terminase large subunit 著者 Xu, R.G, Jenkins, H.T, Chechik, M, Blagova, E.V, Greive, S.J, Antson, A.A. 登録日 2016-10-09 公開日 2016-10-26 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Viral genome packaging terminase cleaves DNA using the canonical RuvC-like two-metal catalysis mechanism. Nucleic Acids Res., 45, 2017
7BM8	Crystal structure of the C-terminally truncated chromosome-partitioning protein ParB from Caulobacter crescentus complexed with CTP-gamma-S 分子名称: CYTIDINE-5'-TRIPHOSPHATE, Chromosome-partitioning protein ParB, MAGNESIUM ION 著者 Jalal, A.S, Tran, N.T, Stevenson, C.E.M, Lawson, D.M, Le, T.B.K. 登録日 2021-01-19 公開日 2021-04-28 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.73 Å) 主引用文献 A CTP-dependent gating mechanism enables ParB spreading on DNA. Elife, 10, 2021
8FF4	Cryo-EM structure of Cascade-DNA-TniQ-TnsC complex (composite) in type I-B CAST system 分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Non-target DNA strand, ... 著者 Chang, L, Wang, S. 登録日 2022-12-07 公開日 2023-08-09 最終更新日 2024-01-31 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Molecular mechanism for Tn7-like transposon recruitment by a type I-B CRISPR effector. Cell, 186, 2023
1CI6	TRANSCRIPTION FACTOR ATF4-C/EBP BETA BZIP HETERODIMER 分子名称: BETA-MERCAPTOETHANOL, FE (III) ION, TRANSCRIPTION FACTOR ATF-4, ... 著者 Podust, L.M, Kim, Y. 登録日 1999-04-07 公開日 2000-12-04 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structure of the CCAAT box/enhancer-binding protein beta activating transcription factor-4 basic leucine zipper heterodimer in the absence of DNA J.Biol.Chem., 276, 2001
1KU9	X-ray Structure of a Methanococcus jannaschii DNA-Binding Protein: Implications for Antibiotic Resistance in Staphylococcus aureus 分子名称: hypothetical protein MJ223 著者 Ray, S.S, Bonanno, J.B, Chen, H, de Lencastre, H, Wu, S, Tomasz, A, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC) 登録日 2002-01-21 公開日 2002-12-25 最終更新日 2021-02-03 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 X-ray structure of an M. jannaschii DNA-binding protein: implications for antibiotic resistance in S. aureus Proteins, 50, 2002
6M44	355 bp di-nucleosome harboring cohesive DNA termini (high cryoprotectant) 分子名称: CALCIUM ION, DNA (355-MER), Histone H2A type 1-B/E, ... 著者 Adhireksan, Z, Sharma, D, Lee, P.L, Davey, C.A. 登録日 2020-03-05 公開日 2020-10-07 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.81 Å) 主引用文献 Near-atomic resolution structures of interdigitated nucleosome fibres. Nat Commun, 11, 2020
6M3V	355 bp di-nucleosome harboring cohesive DNA termini 分子名称: CALCIUM ION, DNA (355-MER), Histone H2A type 1-B/E, ... 著者 Adhireksan, Z, Sharma, D, Lee, P.L, Davey, C.A. 登録日 2020-03-04 公開日 2020-10-07 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (4.6 Å) 主引用文献 Near-atomic resolution structures of interdigitated nucleosome fibres. Nat Commun, 11, 2020
3JA9	Structure of native human PCNA 分子名称: Proliferating cell nuclear antigen 著者 Lau, W.C.Y, Li, Y, Zhang, Q, Huen, M.S.Y. 登録日 2015-05-19 公開日 2015-12-09 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (22 Å) 主引用文献 Molecular architecture of the Ub-PCNA/Pol eta complex bound to DNA Sci Rep, 5, 2015
4XR0	Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- G/T mismatch. 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*GP*T)-3'), DNA (5'-D(*AP*TP*TP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)-3'), ... 著者 Oakley, A.J. 登録日 2015-01-20 公開日 2015-08-26 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Replisome speed determines the efficiency of the Tus-Ter replication termination barrier. Nature, 525, 2015
7MR1	Cryo-EM structure of RecBCD with undocked RecBNuc and flexible RecD C-terminus 分子名称: RecBCD enzyme subunit RecB, RecBCD enzyme subunit RecC, RecBCD enzyme subunit RecD 著者 Hao, L, Zhang, R, Lohman, T.M. 登録日 2021-05-07 公開日 2021-07-28 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Heterogeneity in E. coli RecBCD Helicase-DNA Binding and Base Pair Melting. J.Mol.Biol., 433, 2021
4XR1	Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- AG/AT mismatch. 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(*GP*TP*AP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)-3'), DNA (5'-D(*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*G)-3'), ... 著者 Oakley, A.J. 登録日 2015-01-20 公開日 2015-08-26 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Replisome speed determines the efficiency of the Tus-Ter replication termination barrier. Nature, 525, 2015
7MR0	Cryo-EM structure of RecBCD with docked RecBNuc and flexible RecD 分子名称: RecBCD enzyme subunit RecB, RecBCD enzyme subunit RecC, RecBCD enzyme subunit RecD 著者 Hao, L, Zhang, R, Lohman, T.M. 登録日 2021-05-07 公開日 2021-07-28 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Heterogeneity in E. coli RecBCD Helicase-DNA Binding and Base Pair Melting. J.Mol.Biol., 433, 2021
7MR2	Cryo-EM structure of RecBCD with undocked RecBNuc and flexible RecD 分子名称: RecBCD enzyme subunit RecB, RecBCD enzyme subunit RecC, RecBCD enzyme subunit RecD 著者 Hao, L, Zhang, R, Lohman, T.M. 登録日 2021-05-07 公開日 2021-07-28 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Heterogeneity in E. coli RecBCD Helicase-DNA Binding and Base Pair Melting. J.Mol.Biol., 433, 2021
4R94	Structure of the nickase domain of NS1 from MVM complexed with magnesium 分子名称: MAGNESIUM ION, Non-structural protein NS1 著者 Liang, L, Zhao, H, Tang, L. 登録日 2014-09-03 公開日 2015-01-21 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.668 Å) 主引用文献 Structures of minute virus of mice replication initiator protein N-terminal domain: Insights into DNA nicking and origin binding. Virology, 476C, 2014
4EHS	Crystal structure of Helicobacter pylori DnaG Primase C terminal domain 分子名称: BETA-MERCAPTOETHANOL, DNA primase 著者 Abdul Rehman, S.A, Gourinath, S. 登録日 2012-04-04 公開日 2013-05-01 最終更新日 2017-11-15 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Crystal structure and mode of helicase binding of the C-terminal domain of primase from Helicobacter pylori J.Bacteriol., 195, 2013
4XR2	Escherichia Coli Replication Terminator Protein (Tus) H114A mutant Complexed With DNA- TerA lock. 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, DNA (5'-D(*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*C)-3'), ... 著者 Oakley, A.J. 登録日 2015-01-20 公開日 2015-08-26 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Replisome speed determines the efficiency of the Tus-Ter replication termination barrier. Nature, 525, 2015
4XR3	Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- GC(6) swapped. 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(*TP*AP*CP*TP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)-3'), DNA (5'-D(*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*GP*T)-3'), ... 著者 Oakley, A.J. 登録日 2015-01-20 公開日 2015-08-26 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Replisome speed determines the efficiency of the Tus-Ter replication termination barrier. Nature, 525, 2015

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