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6VIM
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BU of 6vim by Molmil
P. putida mandelate racemase co-crystallized with phenylboronic acid
分子名称: 1,2-ETHANEDIOL, MAGNESIUM ION, Mandelate racemase, ...
著者Grandinetti, L, Sharma, A.N, Bearne, S.L, St Maurice, M.
登録日2020-01-13
公開日2020-08-05
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Potent Inhibition of Mandelate Racemase by Boronic Acids: Boron as a Mimic of a Carbon Acid Center.
Biochemistry, 59, 2020
8QV4
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BU of 8qv4 by Molmil
Hexameric HIV-1 CA in complex with DDD01728503
分子名称: 1,2-ETHANEDIOL, Spacer peptide 1, ethyl 2-(3-oxidanylidene-2,4-dihydroquinoxalin-1-yl)ethanoate
著者Petit, A.P, Fyfe, P.K.
登録日2023-10-17
公開日2024-03-27
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Application of an NMR/Crystallography Fragment Screening Platform for the Assessment and Rapid Discovery of New HIV-CA Binding Fragments.
Chemmedchem, 19, 2024
8QD8
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BU of 8qd8 by Molmil
Wdyg1p in complex with 1,3-Dihydroxynaphthalene
分子名称: 1,2-ETHANEDIOL, Yellowish-green 1-like protein, naphthalene-1,3-diol
著者Schmalhofer, M, Vagstad, A.L, Zhou, Q, Bode, H.B, Groll, M.
登録日2023-08-28
公開日2024-03-13
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Polyketide Trimming Shapes Dihydroxynaphthalene-Melanin and Anthraquinone Pigments.
Adv Sci, 11, 2024
7OPZ
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BU of 7opz by Molmil
Camel GSTM1-1 in complex with glutathione
分子名称: GLUTATHIONE, Glutathione transferase, SODIUM ION
著者Papageorgiou, A.C, Poudel, N.
登録日2021-06-02
公開日2022-02-16
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Structural and Functional Characterization of Camelus dromedarius Glutathione Transferase M1-1.
Life, 12, 2022
7OPY
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BU of 7opy by Molmil
Camel GSTM1-1 in complex with S-(p-nitrobenzyl)glutathione
分子名称: FORMIC ACID, Glutathione transferase, S-(P-NITROBENZYL)GLUTATHIONE, ...
著者Papageorgiou, A.C, Poudel, N.
登録日2021-06-02
公開日2022-02-16
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural and Functional Characterization of Camelus dromedarius Glutathione Transferase M1-1.
Life, 12, 2022
6PVB
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BU of 6pvb by Molmil
The structure of NTMT1 in complex with compound 6
分子名称: AMINO GROUP-()-(2~{S})-2-azanylpropanal-()-ISOLEUCINE-()-ARGININE-()-LYSINE-()-PROLINE-()-AMINO-ACETALDEHYDE-()-9-(5-{[(3S)-3-amino-3-carboxypropyl](pentyl)amino}-5-deoxy-beta-L-arabinofuranosyl)-9H-purin-6-amine, N-terminal Xaa-Pro-Lys N-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE
著者Noinaj, N, Chen, D, Huang, R.
登録日2019-07-20
公開日2020-08-19
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Probing the Plasticity in the Active Site of Protein N-terminal Methyltransferase 1 Using Bisubstrate Analogues.
J.Med.Chem., 63, 2020
8H43
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BU of 8h43 by Molmil
Crystal structure of PHF1 Tudor domain in complex with hit 1
分子名称: 2-[(3S)-piperidin-3-yl]-1,3-benzoxazole, PHD finger protein 1
著者Liu, Y, Ruan, K.
登録日2022-10-10
公開日2023-10-18
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of PHF1 Tudor domain in complex with hit 1
To be published
4UZ8
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BU of 4uz8 by Molmil
The SeMet structure of the family 46 carbohydrate-binding module (CBM46) of endo-beta-1,4-glucanase B (Cel5B) from Bacillus halodurans
分子名称: ENDO-BETA-1,4-GLUCANASE (CELULASE B), SULFATE ION
著者Venditto, I, Santos, H, Ferreira, L.M.A, Sakka, K, Fontes, C.M.G.A, Najmudin, S.
登録日2014-09-04
公開日2015-02-25
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Family 46 Carbohydrate-Binding Modules Contribute to the Enzymatic Hydrolysis of Xyloglucan and Beta-1,3-1,4-Glucans Through Distinct Mechanisms.
J.Biol.Chem., 290, 2015
4WIV
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BU of 4wiv by Molmil
Crystal Structure of the first bromodomain of human BRD4 in complex with a novel inhibitor UMB32 (N-TERT-BUTYL-2-[4-(3,5-DIMETHYL-1,2-OXAZOL-4-YL) PHENYL]IMIDAZO[1,2-A]PYRAZIN-3-AMINE)
分子名称: 1,2-ETHANEDIOL, Bromodomain-containing protein 4, GLYCEROL, ...
著者Xu, X, Blacklow, S.
登録日2014-09-26
公開日2014-10-29
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Biased multicomponent reactions to develop novel bromodomain inhibitors.
J.Med.Chem., 57, 2014
6ND2
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BU of 6nd2 by Molmil
Staphylococcus aureus Dihydrofolate Reductase complexed with NADPH and 6-ETHYL-5-[(3R)-3-[2-METHOXY-5-(PYRIDIN-4-YL)PHENYL]BUT-1-YN-1-YL]PYRIMIDINE-2,4-DIAMINE (UCP1063)
分子名称: 6-ethyl-5-{(3S)-3-[2-methoxy-5-(pyridin-4-yl)phenyl]but-1-yn-1-yl}pyrimidine-2,4-diamine, Dihydrofolate reductase, GLYCEROL, ...
著者Reeve, S.M, Wright, D.L.
登録日2018-12-13
公開日2019-09-25
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.243 Å)
主引用文献Structure-Guided In Vitro to In Vivo Pharmacokinetic Optimization of Propargyl-Linked Antifolates.
Drug Metab.Dispos., 47, 2019
6W0Z
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BU of 6w0z by Molmil
Structure of KHK in complex with compound 8 (2-[(1~{S},5~{R})-3-[2-[(2~{S})-2-methylazetidin-1-yl]-6-(trifluoromethyl)pyrimidin-4-yl]-3-azabicyclo[3.1.0]hexan-6-yl]ethanoic acid)
分子名称: 2-[(1~{S},5~{R})-3-[2-[(2~{S})-2-methylazetidin-1-yl]-6-(trifluoromethyl)pyrimidin-4-yl]-3-azabicyclo[3.1.0]hexan-6-yl]ethanoic acid, Ketohexokinase, SULFATE ION
著者Jasti, J.
登録日2020-03-03
公開日2020-09-23
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Discovery of PF-06835919: A Potent Inhibitor of Ketohexokinase (KHK) for the Treatment of Metabolic Disorders Driven by the Overconsumption of Fructose.
J.Med.Chem., 63, 2020
6Y9S
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BU of 6y9s by Molmil
Crystal structure of GSK-3b in complex with the imidazo[1,5-a]pyridine-3-carboxamide inhibitor 16
分子名称: ACETATE ION, Glycogen synthase kinase-3 beta, ~{N}-(oxan-4-ylmethyl)-6-(5-propan-2-yloxypyridin-3-yl)imidazo[1,5-a]pyridine-3-carboxamide
著者Krapp, S, Griessner, A, Blaesse, M, Buonfiglio, R, Ombrato, R.
登録日2020-03-10
公開日2020-05-20
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Discovery of Novel Imidazopyridine GSK-3 beta Inhibitors Supported by Computational Approaches.
Molecules, 25, 2020
6NIL
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BU of 6nil by Molmil
cryoEM structure of the truncated HIV-1 Vif/CBFbeta/A3F complex
分子名称: Core-binding factor subunit beta, DNA dC->dU-editing enzyme APOBEC-3F, Virion infectivity factor, ...
著者Hu, Y, Xiong, Y.
登録日2018-12-29
公開日2019-12-11
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Structural basis of antagonism of human APOBEC3F by HIV-1 Vif.
Nat.Struct.Mol.Biol., 26, 2019
8EM9
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BU of 8em9 by Molmil
Human PU.1 ETS-Domain (165-270) Bound to d(AATAGGAGAAGTAGGG)
分子名称: DNA (5'-D(*AP*AP*TP*AP*GP*GP*AP*GP*AP*AP*GP*TP*AP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*TP*AP*CP*TP*TP*CP*TP*CP*CP*TP*A)-3'), Transcription factor PU.1
著者Terrell, J.R, Poon, G.M.K.
登録日2022-09-27
公開日2023-07-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.341 Å)
主引用文献DNA selection by the master transcription factor PU.1.
Cell Rep, 42, 2023
6NM8
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BU of 6nm8 by Molmil
IgV-V76T BMS compound 105
分子名称: N-({2,6-dimethoxy-4-[(2-methyl[1,1'-biphenyl]-3-yl)methoxy]phenyl}methyl)-D-alanine, Programmed cell death 1 ligand 1
著者Perry, E, Zhao, B, Fesik, S.
登録日2019-01-10
公開日2019-02-20
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.792 Å)
主引用文献Fragment-based screening of programmed death ligand 1 (PD-L1).
Bioorg. Med. Chem. Lett., 29, 2019
7OCS
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BU of 7ocs by Molmil
Mannitol-1-phosphate bound to the phosphatase domain of the bifunctional mannitol-1-phosphate dehydrogenase/phosphatase MtlD-D16A from Acinetobacter baumannii
分子名称: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, ...
著者Tam, H.K, Mueller, V, Pos, K.M.
登録日2021-04-28
公開日2022-04-27
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Unidirectional mannitol synthesis of Acinetobacter baumannii MtlD is facilitated by the helix-loop-helix-mediated dimer formation.
Proc.Natl.Acad.Sci.USA, 119, 2022
8EKU
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BU of 8eku by Molmil
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAATGGAATGGGG)
分子名称: DNA (5'-D(*AP*AP*TP*AP*AP*AP*TP*GP*GP*AP*AP*TP*GP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*CP*AP*TP*TP*CP*CP*AP*TP*TP*TP*AP*T)-3'), Transcription factor PU.1
著者Terrell, J.R, Poon, G.M.K.
登録日2022-09-22
公開日2023-07-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献DNA selection by the master transcription factor PU.1.
Cell Rep, 42, 2023
8EKJ
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BU of 8ekj by Molmil
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAATGGAAGTGGG)
分子名称: DNA (5'-D(*AP*AP*TP*AP*AP*AP*TP*GP*GP*AP*AP*GP*TP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*AP*CP*TP*TP*CP*CP*AP*TP*TP*TP*AP*T)-3'), Transcription factor PU.1
著者Terrell, J.R, Poon, G.M.K.
登録日2022-09-21
公開日2023-07-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献DNA selection by the master transcription factor PU.1.
Cell Rep, 42, 2023
6W3N
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BU of 6w3n by Molmil
APE1 exonuclease substrate complex D148E
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(C7R))-3'), ...
著者Freudenthal, B.D, Whitaker, A.M.
登録日2020-03-09
公開日2020-06-10
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.69 Å)
主引用文献Molecular and structural characterization of disease-associated APE1 polymorphisms.
DNA Repair (Amst.), 91-92, 2020
7YW3
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BU of 7yw3 by Molmil
Crystal structure of tRNA 2'-phosphotransferase from Homo sapiens
分子名称: 1,2-ETHANEDIOL, [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate, tRNA 2'-phosphotransferase 1
著者Yang, X.Y, Liu, X.H.
登録日2022-08-21
公開日2023-07-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural and biochemical insights into the molecular mechanism of TRPT1 for nucleic acid ADP-ribosylation.
Nucleic Acids Res., 51, 2023
5MLL
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BU of 5mll by Molmil
Structure of HpDprA at 1.9 Angstroms resolution
分子名称: 1,2-ETHANEDIOL, DNA processing chain A (DprA)
著者Lisboa, J, Quevillon-Cheruel, S.
登録日2016-12-07
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The C-terminal domain of HpDprA is a DNA-binding Winged Helix domain that does not bind double-stranded DNA.
FEBS J., 2019
6Q1V
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BU of 6q1v by Molmil
Human DNA Ligase 1 (E592R) Bound to an Adenylated, hydroxyl terminated DNA nick
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ADENOSINE MONOPHOSPHATE, ...
著者Schellenberg, M.J, Williams, R.S, Tumbale, P.S, Riccio, A.A.
登録日2019-08-06
公開日2019-12-11
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Two-tiered enforcement of high-fidelity DNA ligation.
Nat Commun, 10, 2019
6W0X
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BU of 6w0x by Molmil
Structure of KHK in complex with compound 4 (6-[(1~{S},5~{R})-6-(hydroxymethyl)-3-azabicyclo[3.1.0]hexan-3-yl]-2-[(2~{S},3~{R})-2-methyl-3-oxidanyl-azetidin-1-yl]-4-(trifluoromethyl)pyridine-3-carbonitrile)
分子名称: 6-[(1~{S},5~{R})-6-(hydroxymethyl)-3-azabicyclo[3.1.0]hexan-3-yl]-2-[(2~{S},3~{R})-2-methyl-3-oxidanyl-azetidin-1-yl]-4-(trifluoromethyl)pyridine-3-carbonitrile, Ketohexokinase, SULFATE ION
著者Jasti, J.
登録日2020-03-03
公開日2020-09-23
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Discovery of PF-06835919: A Potent Inhibitor of Ketohexokinase (KHK) for the Treatment of Metabolic Disorders Driven by the Overconsumption of Fructose.
J.Med.Chem., 63, 2020
8JW4
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BU of 8jw4 by Molmil
Cryo-EM structure of Plasmodium falciparum multidrug resistance protein 1 in the apo state without H1 helix
分子名称: Multidrug resistance protein 1
著者Li, M, Si, K.
登録日2023-06-28
公開日2023-08-30
実験手法ELECTRON MICROSCOPY (3.13 Å)
主引用文献The structure of Plasmodium falciparum multidrug resistance protein 1 reveals an N-terminal regulatory domain.
Proc.Natl.Acad.Sci.USA, 120, 2023
8JWI
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BU of 8jwi by Molmil
Cryo-EM structure of the outward-facing Plasmodium falciparum multidrug resistance protein 1
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Multidrug resistance protein 1
著者Li, M, Si, K.
登録日2023-06-29
公開日2023-08-30
実験手法ELECTRON MICROSCOPY (2.94 Å)
主引用文献The structure of Plasmodium falciparum multidrug resistance protein 1 reveals an N-terminal regulatory domain.
Proc.Natl.Acad.Sci.USA, 120, 2023

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