PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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7QO1	complex of DNA ligase I and FEN1 on PCNA and DNA 分子名称: ADENOSINE MONOPHOSPHATE, DNA ligase 1, Flap endonuclease 1, ... 著者 Blair, K, Tehseen, M, Raducanu, V.S, Shahid, T, Lancey, C, Cruehet, R, Hamdan, S, De Biasio, A. 登録日 2021-12-23 公開日 2023-01-11 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Mechanism of human Lig1 regulation by PCNA in Okazaki fragment sealing. Nat Commun, 13, 2022
6ZAB	Structure of the transcriptional repressor Atu1419 (VanR) from agrobacterium fabrum in complex a palindromic DNA (P6422 space group) 分子名称: 1,2-ETHANEDIOL, CITRIC ACID, DI(HYDROXYETHYL)ETHER, ... 著者 Morera, S, Naretto, A, Vigouroux, A, Legrand, P. 登録日 2020-06-05 公開日 2020-12-02 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Characterization of the first tetrameric transcription factor of the GntR superfamily with allosteric regulation from the bacterial pathogen Agrobacterium fabrum. Nucleic Acids Res., 49, 2021
3D09	Human p53 core domain with hot spot mutation R249S and second-site suppressor mutations H168R and T123A 分子名称: Cellular tumor antigen p53, ZINC ION 著者 Rozenberg, H, Suad, O, Shakked, Z. 登録日 2008-05-01 公開日 2009-01-20 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural basis of restoring sequence-specific DNA binding and transactivation to mutant p53 by suppressor mutations J.Mol.Biol., 385, 2009
3D06	Human p53 core domain with hot spot mutation R249S (I) 分子名称: Cellular tumor antigen p53, ZINC ION 著者 Rozenberg, H, Suad, O, Shimon, L.J.W, Frolow, F, Shakked, Z. 登録日 2008-05-01 公開日 2009-01-20 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Structural basis of restoring sequence-specific DNA binding and transactivation to mutant p53 by suppressor mutations J.Mol.Biol., 385, 2009
3GLI	Crystal Structure of the E. coli clamp loader bound to Primer-Template DNA and Psi Peptide 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA (5'-D(*CP*TP*GP*GP*CP*CP*TP*AP*TP*A)-3'), ... 著者 Simonetta, K.R, Cantor, A.J, Kuriyan, J. 登録日 2009-03-12 公開日 2009-05-26 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 The mechanism of ATP-dependent primer-template recognition by a clamp loader complex. Cell(Cambridge,Mass.), 137, 2009
5LD2	Cryo-EM structure of RecBCD+DNA complex revealing activated nuclease domain 分子名称: Fork-Hairpin DNA (70-MER), MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... 著者 Wilkinson, M, Chaban, Y, Wigley, D.B. 登録日 2016-06-23 公開日 2016-10-05 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.83 Å) 主引用文献 Mechanism for nuclease regulation in RecBCD. Elife, 5, 2016
7R1Q	X-ray structure of the adduct formed upon reaction of the gold(I) N-heterocyclic carbene complex Au2 with lysozyme 分子名称: DIMETHYL SULFOXIDE, GOLD ION, Lysozyme 著者 Merlino, A, Ferraro, G. 登録日 2022-02-03 公開日 2022-07-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Halo complexes of gold(I) containing glycoconjugate carbene ligands: synthesis, characterization, cytotoxicity and interaction with proteins and DNA model systems. Dalton Trans, 51, 2022
7R1P	X-ray structure of the adduct formed upon reaction of the gold(I) N-heterocyclic carbene complex Au1 with RNase A 分子名称: GOLD ION, Ribonuclease pancreatic, SULFATE ION 著者 Merlino, A, Ferraro, G. 登録日 2022-02-03 公開日 2022-07-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.42 Å) 主引用文献 Halo complexes of gold(I) containing glycoconjugate carbene ligands: synthesis, characterization, cytotoxicity and interaction with proteins and DNA model systems. Dalton Trans, 51, 2022
6LMH	Structure of an ASFV-derived histone-like protein pA104R 分子名称: pA104R 著者 Wang, H, Qi, J, Chai, Y, Gao, F. 登録日 2019-12-25 公開日 2020-05-13 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.805 Å) 主引用文献 The structural basis of African swine fever virus pA104R binding to DNA and its inhibition by stilbene derivatives. Proc.Natl.Acad.Sci.USA, 117, 2020
7SS5	Activated SgrAI endonuclease DNA-bound dimer with Ca2+ and intact primary site DNA 分子名称: CALCIUM ION, DNA (5'-D(P*GP*GP*TP*CP*TP*TP*CP*AP*CP*AP*CP*CP*GP*GP*TP*GP*TP*GP*AP*AP*GP*AP*CP*C)-3'), SgraIR restriction enzyme 著者 Shan, Z, Lyumkis, D, Horton, N.C. 登録日 2021-11-09 公開日 2021-12-01 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Pretransition state and apo structures of the filament-forming enzyme SgrAI elucidate mechanisms of activation and substrate specificity. J.Biol.Chem., 298, 2022
7AXZ	Ku70/80 complex apo form 分子名称: X-ray repair cross-complementing protein 5, X-ray repair cross-complementing protein 6 著者 Hnizda, A, Tesina, P, Novak, P, Blundell, T.L. 登録日 2020-11-10 公開日 2021-02-10 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 SAP domain forms a flexible part of DNA aperture in Ku70/80. Febs J., 288, 2021
4ZN3	Crystal Structure of MjSpt4:Spt5 complex conformation B 分子名称: FE (III) ION, GLYCEROL, Transcription elongation factor Spt4, ... 著者 Guo, G.R, Zhou, H.H, Gao, Y.X, Zhu, Z.L, Niu, L.W, Teng, M.K. 登録日 2015-05-04 公開日 2016-03-16 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural and biochemical insights into the DNA-binding mode of MjSpt4p:Spt5 complex at the exit tunnel of RNAPII J.Struct.Biol., 192, 2015
2KJC	Solution structure of CzrA in the Zn(II) state 分子名称: CzrA protein 著者 Arunkumar, A.I, Campanello, G.C, Giedroc, D.P. 登録日 2009-05-27 公開日 2009-11-10 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of a paradigm ArsR family zinc sensor in the DNA-bound state Proc.Natl.Acad.Sci.USA, 106, 2009
3CBB	Crystal Structure of Hepatocyte Nuclear Factor 4alpha in complex with DNA: Diabetes Gene Product 分子名称: Hepatocyte Nuclear Factor 4-alpha promoter element DNA, Hepatocyte Nuclear Factor 4-alpha, DNA binding domain, ... 著者 Lu, P, Rha, G.B, Melikishvili, M, Adkins, B.C, Fried, M.G, Chi, Y.I. 登録日 2008-02-21 公開日 2008-10-07 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural basis of natural promoter recognition by a unique nuclear receptor, HNF4alpha. Diabetes gene product. J.Biol.Chem., 283, 2008
4FJO	Structure of the Rev1 CTD-Rev3/7-Pol kappa RIR complex 分子名称: DNA polymerase kappa, DNA polymerase zeta catalytic subunit, DNA repair protein REV1, ... 著者 Wojtaszek, J, Lee, C.-J, Zhou, P. 登録日 2012-06-11 公開日 2012-08-08 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.718 Å) 主引用文献 Structural basis of Rev1-mediated assembly of a quaternary vertebrate translesion polymerase complex consisting of Rev1, heterodimeric Pol zeta and Pol kappa J.Biol.Chem., 287, 2012
3MKL	Crystal structure of DNA-binding transcriptional dual regulator from Escherichia coli K-12 分子名称: HTH-type transcriptional regulator gadX 著者 Chang, C, Mack, J, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2010-04-15 公開日 2010-04-28 最終更新日 2017-11-08 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Crystal structure of DNA-binding transcriptional dual regulator from Escherichia coli K-12 To be Published
6XNY	Structure of RAG1 (R848M/E649V)-RAG2-DNA Strand Transfer Complex (Paired-Form) 分子名称: 12RSS integration strand (55-mer), 12RSS signal DNA top strand (34-mer), 23RSS integration strand (66-mer), ... 著者 Zhang, Y, Corbett, E, Wu, S, Schatz, D.G. 登録日 2020-07-05 公開日 2020-08-26 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural basis for the activation and suppression of transposition during evolution of the RAG recombinase. Embo J., 39, 2020
5NG6	Crystal structure of FnCas12a bound to a crRNA 分子名称: CRISPR-associated endonuclease Cpf1, MAGNESIUM ION, crRNA 著者 Swarts, D.C, van der Oost, J, Jinek, M. 登録日 2017-03-16 公開日 2017-06-14 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.342 Å) 主引用文献 Structural Basis for Guide RNA Processing and Seed-Dependent DNA Targeting by CRISPR-Cas12a. Mol. Cell, 66, 2017
3P7N	Crystal structure of light activated transcription factor El222 from Erythrobacter litoralis 分子名称: FLAVIN MONONUCLEOTIDE, Sensor histidine kinase 著者 McNulty, R, Luecke, H. 登録日 2010-10-12 公開日 2011-05-25 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural basis of photosensitivity in a bacterial light-oxygen-voltage/helix-turn-helix (LOV-HTH) DNA-binding protein. Proc.Natl.Acad.Sci.USA, 108, 2011
3GCC	SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, 46 STRUCTURES 分子名称: ATERF1 著者 Allen, M.D, Yamasaki, K, Ohme-Takagi, M, Tateno, M, Suzuki, M. 登録日 1998-03-13 公開日 1999-03-23 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 A novel mode of DNA recognition by a beta-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA. EMBO J., 17, 1998
6XNZ	Structure of RAG1 (R848M/E649V)-RAG2-DNA Target Capture Complex 分子名称: 12RSS integration strand (34-mer), 12RSS non-integration strand (34-mer), 23RSS integration strand (45-mer), ... 著者 Zhang, Y, Corbett, E, Wu, S, Schatz, D.G. 登録日 2020-07-05 公開日 2020-08-26 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structural basis for the activation and suppression of transposition during evolution of the RAG recombinase. Embo J., 39, 2020
4U82	Structure of S. aureus undecaprenyl diphosphate synthase in complex with FSPP and sulfate 分子名称: Isoprenyl transferase, MAGNESIUM ION, S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL] TRIHYDROGEN THIODIPHOSPHATE, ... 著者 Zhu, W, Oldfield, E. 登録日 2014-07-31 公開日 2015-02-04 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.66 Å) 主引用文献 Antibacterial drug leads: DNA and enzyme multitargeting. J.Med.Chem., 58, 2015
4GFL	NO mechanism, slma 分子名称: Nucleoid occlusion factor SlmA 著者 Schumacher, M.A. 登録日 2012-08-03 公開日 2013-06-19 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 SlmA forms a higher-order structure on DNA that inhibits cytokinetic Z-ring formation over the nucleoid. Proc.Natl.Acad.Sci.USA, 110, 2013
5YIW	Caulobacter crescentus GcrA DNA-binding domain (DBD) in complex with methylated dsDNA (crystal form 2) 分子名称: (R,R)-2,3-BUTANEDIOL, Cell cycle regulatory protein GcrA, DNA (5'-D(*CP*CP*CP*TP*GP*(6MA)P*TP*TP*CP*GP*C)-3'), ... 著者 Wu, X, Zhang, Y. 登録日 2017-10-06 公開日 2018-03-21 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.551 Å) 主引用文献 Structural insights into the unique mechanism of transcription activation by Caulobacter crescentus GcrA. Nucleic Acids Res., 46, 2018
5YIV	Caulobacter crescentus GcrA DNA-binding domain(DBD) in complex with methylated dsDNA(crystal form 1) 分子名称: Cell cycle regulatory protein GcrA, DNA (5'-D(*CP*CP*GP*(6MA)P*AP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*CP*TP*GP*(6MA)P*TP*TP*CP*G)-3') 著者 Wu, X, Zhang, Y. 登録日 2017-10-06 公開日 2018-03-21 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.914 Å) 主引用文献 Structural insights into the unique mechanism of transcription activation by Caulobacter crescentus GcrA. Nucleic Acids Res., 46, 2018

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