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3EVE
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BU of 3eve by Molmil
Crystal structure of GpppA complex of yellow fever virus methyltransferase and S-adenosyl-L-homocysteine
分子名称: GUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE, RNA-directed RNA polymerase NS5, S-ADENOSYL-L-HOMOCYSTEINE
著者Thompson, A.A.
登録日2008-10-13
公開日2009-01-06
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Analysis of flavivirus NS5 methyltransferase cap binding.
J.Mol.Biol., 385, 2009
3EVF
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BU of 3evf by Molmil
Crystal structure of Me7-GpppA complex of yellow fever virus methyltransferase and S-adenosyl-L-homocysteine
分子名称: P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE, RNA-directed RNA polymerase NS5, S-ADENOSYL-L-HOMOCYSTEINE
著者Thompson, A.A, Geiss, B.J, Peersen, O.B.
登録日2008-10-13
公開日2009-01-06
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Analysis of flavivirus NS5 methyltransferase cap binding.
J.Mol.Biol., 385, 2009
7EGF
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BU of 7egf by Molmil
TFIID lobe A subcomplex
分子名称: TATA-box-binding protein, Transcription initiation factor TFIID subunit 10, Transcription initiation factor TFIID subunit 11, ...
著者Chen, X, Wu, Z, Li, J, Zhao, D, Xu, Y.
登録日2021-03-24
公開日2021-05-05
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.16 Å)
主引用文献Structural insights into preinitiation complex assembly on core promoters.
Science, 2021
7V2Y
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BU of 7v2y by Molmil
cryo-EM structure of yeast THO complex with Sub2
分子名称: ATP-dependent RNA helicase SUB2, Protein TEX1, THO complex subunit 2, ...
著者Chen, C, Tan, M, Wu, Z, Wu, J, Lei, M.
登録日2021-08-10
公開日2022-07-27
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural and functional insights into R-loop prevention and mRNA export by budding yeast THO-Sub2 complex.
Sci Bull (Beijing), 66, 2021
3EVC
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BU of 3evc by Molmil
Crystal structure of GTP complex of yellow fever virus methyltransferase and S-adenosyl-L-homocysteine
分子名称: GUANOSINE-5'-TRIPHOSPHATE, RNA-directed RNA polymerase NS5, S-ADENOSYL-L-HOMOCYSTEINE
著者Thompson, A.A, Geiss, B.J, Peersen, O.B.
登録日2008-10-13
公開日2009-01-06
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Analysis of flavivirus NS5 methyltransferase cap binding.
J.Mol.Biol., 385, 2009
3EVD
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BU of 3evd by Molmil
Crystal structure of GTP complex of yellow fever virus methyltransferase and S-adenosyl-L-homocysteine
分子名称: GUANOSINE-5'-TRIPHOSPHATE, RNA-directed RNA polymerase NS5, S-ADENOSYL-L-HOMOCYSTEINE
著者Thompson, A.A, Geiss, B.J, Peersen, O.B.
登録日2008-10-13
公開日2009-01-06
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Analysis of flavivirus NS5 methyltransferase cap binding.
J.Mol.Biol., 385, 2009
3MAG
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BU of 3mag by Molmil
VACCINIA METHYLTRANSFERASE VP39 COMPLEXED WITH M3ADE AND S-ADENOSYLHOMOCYSTEINE
分子名称: 6-AMINO-3-METHYLPURINE, S-ADENOSYL-L-HOMOCYSTEINE, VP39
著者Hu, G, Hodel, A.E, Gershon, P.D, Quiocho, F.A.
登録日1998-07-12
公開日1999-07-22
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献mRNA cap recognition: dominant role of enhanced stacking interactions between methylated bases and protein aromatic side chains.
Proc.Natl.Acad.Sci.USA, 96, 1999
3O0F
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BU of 3o0f by Molmil
Crystal structure of a putative metal-dependent phosphoesterase (BAD_1165) from bifidobacterium adolescentis atcc 15703 at 1.94 A resolution
分子名称: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, FE (III) ION, ...
著者Joint Center for Structural Genomics (JCSG)
登録日2010-07-19
公開日2010-08-25
最終更新日2023-02-01
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Crystal structure of a metal-dependent phosphoesterase (YP_910028.1) from Bifidobacterium adolescentis: Computational prediction and experimental validation of phosphoesterase activity.
Proteins, 79, 2011
8G1P
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BU of 8g1p by Molmil
Co-crystal structure of Compound 11 in complex with the bromodomain of human SMARCA2 and pVHL:ElonginC:ElonginB
分子名称: (2~{S},4~{R})-~{N}-[[2-[2-[4-[[4-[3-azanyl-6-(2-hydroxyphenyl)pyridazin-4-yl]piperazin-1-yl]methyl]phenyl]ethoxy]-4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]-1-[(2~{S})-2-[(1-fluoranylcyclopropyl)carbonylamino]-3,3-dimethyl-butanoyl]-4-oxidanyl-pyrrolidine-2-carboxamide, Elongin-B, Elongin-C, ...
著者Ghimire Rijal, S, Wurz, R.P, Vaish, A.
登録日2023-02-02
公開日2023-07-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Affinity and cooperativity modulate ternary complex formation to drive targeted protein degradation.
Nat Commun, 14, 2023
3BEP
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BU of 3bep by Molmil
Structure of a sliding clamp on DNA
分子名称: 1-(3-hydroxypropyl)-2-{(1E,3E,5E)-5-[1-(3-hydroxypropyl)-3,3-dimethyl-1,3-dihydro-2H-indol-2-ylidene]penta-1,3-dien-1-y l}-3,3-dimethyl-3H-indolium, DNA (5'-D(*DTP*DTP*DTP*DTP*DAP*DTP*DAP*DCP*DGP*DAP*DTP*DGP*DGP*DG)-3'), DNA (5'-D(P*DCP*DCP*DCP*DAP*DTP*DCP*DGP*DTP*DAP*DT)-3'), ...
著者Georgescu, R.E, Kim, S.S, Yurieva, O, Kuriyan, J, Kong, X.-P, O'Donnell, M.
登録日2007-11-19
公開日2008-01-29
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Structure of a sliding clamp on DNA
Cell(Cambridge,Mass.), 132, 2008
3MCT
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BU of 3mct by Molmil
VACCINIA METHYLTRANSFERASE VP39 COMPLEXED WITH M3CYT AND S-ADENOSYLHOMOCYSTEINE
分子名称: 3-METHYLCYTOSINE, S-ADENOSYL-L-HOMOCYSTEINE, VP39
著者Hu, G, Gershon, P.D, Hodel, A.E, Quiocho, F.A.
登録日1999-01-05
公開日1999-07-22
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献mRNA cap recognition: dominant role of enhanced stacking interactions between methylated bases and protein aromatic side chains.
Proc.Natl.Acad.Sci.USA, 96, 1999
8RNH
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BU of 8rnh by Molmil
Crystal structure of HLA B*18:01 in complex with EEIEITTHF, an 9-mer epitope from Influenza A
分子名称: 1,2-ETHANEDIOL, Beta-2-microglobulin, DI(HYDROXYETHYL)ETHER, ...
著者Murdolo, L.D, Maddumaage, J, Gras, S.
登録日2024-01-10
公開日2024-05-08
最終更新日2024-07-24
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Characterisation of novel influenza-derived HLA-B*18:01-restricted epitopes.
Clin Transl Immunology, 13, 2024
8G7U
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BU of 8g7u by Molmil
Cryo-EM structure of Riplet:RIG-I:dsRNA complex (end-semi-closed end)
分子名称: Antiviral innate immune response receptor RIG-I, E3 ubiquitin-protein ligase RNF135, ZINC ION, ...
著者Wang, W, Pyle, A.M.
登録日2023-02-17
公開日2023-11-15
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献The E3 ligase Riplet promotes RIG-I signaling independent of RIG-I oligomerization.
Nat Commun, 14, 2023
8G7T
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BU of 8g7t by Molmil
Cryo-EM structure of Riplet:RIG-I:dsRNA complex (end-end)
分子名称: Antiviral innate immune response receptor RIG-I, E3 ubiquitin-protein ligase RNF135, ZINC ION, ...
著者Wang, W, Pyle, A.M.
登録日2023-02-17
公開日2023-11-15
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献The E3 ligase Riplet promotes RIG-I signaling independent of RIG-I oligomerization.
Nat Commun, 14, 2023
8G7V
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BU of 8g7v by Molmil
Cryo-EM structure of Riplet:RIG-I:dsRNA complex (end-inter)
分子名称: Antiviral innate immune response receptor RIG-I, E3 ubiquitin-protein ligase RNF135, ZINC ION, ...
著者Wang, W, Pyle, A.M.
登録日2023-02-17
公開日2023-11-15
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献The E3 ligase Riplet promotes RIG-I signaling independent of RIG-I oligomerization.
Nat Commun, 14, 2023
8PTG
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BU of 8ptg by Molmil
Structure of the transcription termination factor Rho bound to RNA at the PBS and SBS
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ...
著者Said, N, Hilal, T, Wahl, M.C.
登録日2023-07-14
公開日2024-04-17
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Sm-like protein Rof inhibits transcription termination factor rho by binding site obstruction and conformational insulation.
Nat Commun, 15, 2024
6EIH
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BU of 6eih by Molmil
The crystal structure of 14-3-3 epsilon in complex with the phosphorylated NELFE peptide
分子名称: 14-3-3 protein epsilon, SER-ILE-SEP-ARG
著者Akutsu, M, Wagner, S.A, Beli, P.
登録日2017-09-19
公開日2018-02-14
最終更新日2019-10-16
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献p38-MK2 signaling axis regulates RNA metabolism after UV-light-induced DNA damage.
Nat Commun, 9, 2018
8VRK
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BU of 8vrk by Molmil
Rigid body fitted model for refined density map of gamma tubulin ring complex capped microtubule
分子名称: Actin, cytoplasmic 1, Gamma-tubulin complex component 3, ...
著者Aher, A, Urnavicius, L, Kapoor, T.M.
登録日2024-01-22
公開日2024-03-27
最終更新日2024-07-31
実験手法ELECTRON MICROSCOPY (8.5 Å)
主引用文献Structure of the gamma-tubulin ring complex-capped microtubule.
Nat.Struct.Mol.Biol., 31, 2024
8VRJ
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BU of 8vrj by Molmil
Rigid body fitted model for gamma tubulin ring complex capped microtubule
分子名称: Actin, cytoplasmic 1, Gamma-tubulin complex component 3, ...
著者Aher, A, Urnavicius, L, Kapoor, T.M.
登録日2024-01-22
公開日2024-03-27
最終更新日2024-07-31
実験手法ELECTRON MICROSCOPY (7.7 Å)
主引用文献Structure of the gamma-tubulin ring complex-capped microtubule.
Nat.Struct.Mol.Biol., 31, 2024
3BBF
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BU of 3bbf by Molmil
Crystal structure of the NM23-H2 transcription factor complex with GDP
分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Weichsel, A, Montfort, W.R.
登録日2007-11-09
公開日2008-09-23
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献NM23-H2 may play an indirect role in transcriptional activation of c-myc gene expression but does not cleave the nuclease hypersensitive element III1.
Mol.Cancer Ther., 8, 2009
1BKY
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BU of 1bky by Molmil
VACCINIA METHYLTRANSFERASE VP39 COMPLEXED WITH M1CYT AND S-ADENOSYLHOMOCYSTEINE
分子名称: 1-METHYLCYTOSINE, S-ADENOSYL-L-HOMOCYSTEINE, VP39
著者Hu, G, Hodel, A.E, Gershon, P.D, Quiocho, F.A.
登録日1998-07-13
公開日1999-07-22
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献mRNA cap recognition: dominant role of enhanced stacking interactions between methylated bases and protein aromatic side chains.
Proc.Natl.Acad.Sci.USA, 96, 1999
3BBB
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BU of 3bbb by Molmil
Crystal structure of the NM23-H2 transcription factor complex with dinucleotide d(AG)
分子名称: DNA (5'-D(*AP*G)-3'), Nucleoside diphosphate kinase B
著者Weichsel, A, Montfort, W.R.
登録日2007-11-09
公開日2008-09-23
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献NM23-H2 may play an indirect role in transcriptional activation of c-myc gene expression but does not cleave the nuclease hypersensitive element III1.
Mol.Cancer Ther., 8, 2009
3BBC
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BU of 3bbc by Molmil
Crystal structure of R88A mutant of the NM23-H2 transcription factor
分子名称: Nucleoside diphosphate kinase B
著者Weichsel, A, Montfort, W.R.
登録日2007-11-09
公開日2008-09-23
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献NM23-H2 may play an indirect role in transcriptional activation of c-myc gene expression but does not cleave the nuclease hypersensitive element III1.
Mol.Cancer Ther., 8, 2009
6ZHC
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BU of 6zhc by Molmil
PROTAC6 mediated complex of VHL:EloB:EloC and Bcl-xL
分子名称: 1,2-ETHANEDIOL, 2-[8-(1,3-benzothiazol-2-ylcarbamoyl)-3,4-dihydro-1~{H}-isoquinolin-2-yl]-5-[3-[4-[3-[2-[2-[2-[2-[2-[3-[[(2~{S})-3,3-dimethyl-1-[(2~{S},4~{R})-2-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methylcarbamoyl]-4-oxidanyl-pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]amino]-3-oxidanylidene-propoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]prop-1-ynyl]phenoxy]propyl]-1,3-thiazole-4-carboxylic acid, Bcl-2-like protein 1, ...
著者Chung, C.
登録日2020-06-22
公開日2020-08-05
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Structural Insights into PROTAC-Mediated Degradation of Bcl-xL.
Acs Chem.Biol., 15, 2020
4L81
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BU of 4l81 by Molmil
Structure of the SAM-I/IV riboswitch (env87(deltaU92, deltaG93))
分子名称: COBALT HEXAMMINE(III), MAGNESIUM ION, S-ADENOSYLMETHIONINE, ...
著者Trausch, J.J, Reyes, F.E, Edwards, A.L, Batey, R.T.
登録日2013-06-15
公開日2014-05-28
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Structural basis for diversity in the SAM clan of riboswitches.
Proc.Natl.Acad.Sci.USA, 111, 2014

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