PDB: 46200 件ウェブページステータス検索Chemie searchBIRD

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7XLJ	The crystal structure of ORE1(ANAC092) NAC domain 分子名称: NAC domain-containing protein 92 著者 Chun, I.S, Kim, M.S. 登録日 2022-04-21 公開日 2023-03-29 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Structural basis of DNA binding by the NAC transcription factor ORE1, a master regulator of plant senescence. Plant Commun., 4, 2023
2QBY	Crystal structure of a heterodimer of Cdc6/Orc1 initiators bound to origin DNA (from S. solfataricus) 分子名称: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 6 homolog 1, Cell division control protein 6 homolog 3, ... 著者 Cunningham Dueber, E.L, Corn, J.E, Bell, S.D, Berger, J.M. 登録日 2007-06-18 公開日 2007-09-11 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.35 Å) 主引用文献 Replication origin recognition and deformation by a heterodimeric archaeal Orc1 complex. Science, 317, 2007
1W3S	The crystal structure of RecO from Deinococcus radiodurans. 分子名称: HYPOTHETICAL PROTEIN DR0819, ZINC ION 著者 Leiros, I, Timmins, J, Hall, D.R, Leonard, G.A, McSweeney, S.M. 登録日 2004-07-18 公開日 2005-02-23 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal Structure and DNA-Binding Analysis of Reco from Deinococcus Radiodurans Embo J., 24, 2005
1LWT	Crystal structure of the intein homing endonuclease PI-SceI bound to its substrate DNA (Ca2+ free) 分子名称: ENDONUCLEASE PI-SCEI, PI-SceI DNA substrate bottom strand, PI-SceI DNA substrate top strand 著者 Moure, C.M, Gimble, F.S, Quiocho, F.A. 登録日 2002-06-03 公開日 2002-09-27 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Crystal structure of the intein homing endonuclease PI-SceI bound to its recognition sequence. Nat.Struct.Biol., 9, 2002
1MB1	MBP1 FROM SACCHAROMYCES CEREVISIAE 分子名称: MLU1-BOX BINDING PROTEIN 著者 Taylor, I.A, Smerdon, S.J. 登録日 1997-07-23 公開日 1998-07-29 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 The X-ray structure of the DNA-binding domain from the Saccharomyces cerevisiae cell-cycle transcription factor Mbp1 at 2.1 A resolution. J.Mol.Biol., 272, 1997
4M95	d(ATCCGTTATAACGGAT)complexed with Moloney Murine Leukemia virus reverse transcriptase catalytic fragment 分子名称: 1,2-ETHANEDIOL, 5' d(ATCCGTTA) 3', 5' d(TAACGGAT) 3', ... 著者 Singh, I. 登録日 2013-08-14 公開日 2014-03-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.72 Å) 主引用文献 The structure of an authentic spore photoproduct lesion in DNA suggests a basis for recognition. Acta Crystallogr.,Sect.D, 70, 2014
3CUO	Crystal structure of the predicted DNA-binding transcriptional regulator from E. coli 分子名称: Uncharacterized HTH-type transcriptional regulator ygaV 著者 Zhang, R, Evdokimova, E, Kagan, O, Savchenko, A, Edwards, A.M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2008-04-16 公開日 2008-06-17 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The crystal structure of the predicted DNA-binding transcriptional regulator from E. coli. To be Published
4UW2	Crystal structure of Csm1 in T.onnurineus 分子名称: CSM1 著者 Jung, T.Y, An, Y, Park, K.H, Lee, M.H, Oh, B.H, Woo, E.J. 登録日 2014-08-08 公開日 2015-03-25 最終更新日 2015-09-23 実験手法 X-RAY DIFFRACTION (2.632 Å) 主引用文献 Crystal Structure of the Csm1 Subunit of the Csm Complex and its Single-Stranded DNA-Specific Nuclease Activity. Structure, 23, 2015
3BTP	Crystal structure of Agrobacterium tumefaciens VirE2 in complex with its chaperone VirE1: a novel fold and implications for DNA binding 分子名称: AMMONIUM ION, DI(HYDROXYETHYL)ETHER, Protein virE1, ... 著者 Dym, O, Albeck, S, Unger, T, Elbaum, M, Israel Structural Proteomics Center (ISPC) 登録日 2007-12-30 公開日 2008-08-19 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of the Agrobacterium virulence complex VirE1-VirE2 reveals a flexible protein that can accommodate different partners. Proc.Natl.Acad.Sci.Usa, 105, 2008
8DEI	Structure of the Cac1 KER domain 分子名称: DI(HYDROXYETHYL)ETHER, GLYCEROL, Maltodextrin-binding protein,Chromatin assembly factor 1 subunit p90 fusion, ... 著者 Rosas, R, Churchill, M.E.A. 登録日 2022-06-20 公開日 2023-07-05 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.81 Å) 主引用文献 A novel single alpha-helix DNA-binding domain in CAF-1 promotes gene silencing and DNA damage survival through tetrasome-length DNA selectivity and spacer function. Elife, 12, 2023
7X8C	Crystal structure of a KTSC family protein from Euryarchaeon Methanolobus vulcani 分子名称: KTSC domain-containing protein, SODIUM ION 著者 Zhang, Z.F, Zhu, K.L, Chen, Y.Y, Cao, P, Gong, Y. 登録日 2022-03-12 公開日 2022-08-17 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.73 Å) 主引用文献 Biochemical and structural characterization of a KTSC family single-stranded DNA-binding protein from Euryarchaea. Int.J.Biol.Macromol., 216, 2022
5EDW	Ternary structure of Dpo4 bound to G in the template base paired with incoming dTTP 分子名称: CALCIUM ION, DNA (5'-D(*CP*TP*AP*AP*CP*GP*GP*GP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'), ... 著者 Koag, M.-C, Lee, S. 登録日 2015-10-22 公開日 2016-11-02 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.62 Å) 主引用文献 Structure of Dpo4 DNA polymerase replicating across the genotoxic N7-methylguanine lesion To Be Published
4DOW	Structure of mouse ORC1 BAH domain bound to H4K20me2 分子名称: Histone H4, Origin recognition complex subunit 1 著者 Song, J, Patel, D.J. 登録日 2012-02-10 公開日 2012-03-07 最終更新日 2012-04-11 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier-Gorlin syndrome. Nature, 484, 2012
7XHO	Structure of human inner kinetochore CCAN complex 分子名称: CENP-W, Centromere protein C, Centromere protein H, ... 著者 Tian, T, Wang, C.L, Yang, Z.S, Sun, L.F, Zang, J.Y. 登録日 2022-04-09 公開日 2022-12-14 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (3.29 Å) 主引用文献 Structural insights into human CCAN complex assembled onto DNA. Cell Discov, 8, 2022
3KU0	Structure of GAP31 with adenine at its binding pocket 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENINE, Ribosome-inactivating protein gelonin 著者 Kong, X.-P. 登録日 2009-11-26 公開日 2010-01-26 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 A new activity of anti-HIV and anti-tumor protein GAP31: DNA adenosine glycosidase--structural and modeling insight into its functions. Biochem.Biophys.Res.Commun., 391, 2010
5WQE	Crystal structure of Alicyclobacillus acidoterrestris C2c1 in complex with single-guide RNA at 3.1 Angstrom resolution 分子名称: CRISPR-associated endonuclease C2c1, RNA (60-MER) 著者 Liu, L, Wang, Y.L. 登録日 2016-11-26 公開日 2017-01-25 最終更新日 2017-10-18 実験手法 X-RAY DIFFRACTION (3.126 Å) 主引用文献 C2c1-sgRNA Complex Structure Reveals RNA-Guided DNA Cleavage Mechanism Mol. Cell, 65, 2017
3KO2	I-MsoI re-designed for altered DNA cleavage specificity (-7C) 分子名称: 5'-D(*CP*GP*GP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*CP*GP*AP*CP*GP*GP*TP*CP*TP*GP*C)-3', 5'-D(*GP*CP*AP*GP*AP*CP*CP*GP*TP*CP*GP*TP*GP*AP*GP*AP*CP*AP*GP*TP*TP*CP*CP*G)-3', CALCIUM ION, ... 著者 Taylor, G.K, Stoddard, B.L. 登録日 2009-11-13 公開日 2010-05-19 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs. Nucleic Acids Res., 38, 2010
1MO6	RECA-DATP-MG COMPLEX 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, RecA 著者 Datta, S, Ganesh, N, Chandra, N.R, TB Structural Genomics Consortium (TBSGC) 登録日 2002-09-07 公開日 2003-02-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural studies on MtRecA-nucleotide complexes: Insights into DNA and nucleotide binding and the structural signature of NTP recognition Proteins, 50, 2003
1MO3	RECA-ADP COMPLEX 分子名称: ADENOSINE-5'-DIPHOSPHATE, RecA 著者 Datta, S, Ganesh, N, Chandra, N.R, TB Structural Genomics Consortium (TBSGC) 登録日 2002-09-07 公開日 2003-02-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural studies on MtRecA-nucleotide complexes: Insights into DNA and nucleotide binding and the structural signature of NTP recognition Proteins, 50, 2003
1VYA	Identification and characterization of the first plant G-quadruplex binding protein encoded by the Zea mays L. nucleoside diphosphate1 gene, ZmNDPK1 分子名称: Nucleoside diphosphate kinase 著者 Kopylov, M, Stroupe, M.E. 登録日 2014-08-14 公開日 2015-04-08 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 The Maize (Zea mays L.) Nucleoside Diphosphate Kinase1 (ZmNDPK1) Gene Encodes a Human NM23-H2 Homologue That Binds and Stabilizes G-Quadruplex DNA. Biochemistry, 54, 2015
4WLS	Crystal structure of the metal-free (repressor) form of E. Coli CUER, a copper efflux regulator, bound to COPA promoter DNA 分子名称: COPA PROMOTER DNA NON-TEMPLATE STRAND, COPA PROMOTER DNA NON-TEMPLATE STRAND (ALTERNATE CONFORMATION), COPA PROMOTER DNA TEMPLATE STRAND, ... 著者 Philips, S.J, Canalizo-Hernandez, M, Mondragon, A, O'Halloran, T.V. 登録日 2014-10-08 公開日 2015-09-02 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.105 Å) 主引用文献 Allosteric transcriptional regulation via changes in the overall topology of the core promoter. Science, 349, 2015
6O9E	Structure of HIV-1 Reverse Transcriptase in complex with DNA and INDOPY-1 分子名称: 5-methyl-1-(4-nitrophenyl)-2-oxo-2,5-dihydro-1H-pyrido[3,2-b]indole-3-carbonitrile, AMMONIUM ION, DI(HYDROXYETHYL)ETHER, ... 著者 Ruiz, F.X, Hoang, A, Das, K, Arnold, E. 登録日 2019-03-13 公開日 2019-10-23 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural Basis of HIV-1 Inhibition by Nucleotide-Competing Reverse Transcriptase Inhibitor INDOPY-1. J.Med.Chem., 62, 2019
3KRN	Crystal Structure of C. elegans cell-death-related nuclease 5(CRN-5) 分子名称: Protein C14A4.5, confirmed by transcript evidence 著者 Yang, C.-C, Wang, Y.-T, Hsiao, Y.-Y, Doudeva, L.G, Chow, S.Y, Yuan, H.S. 登録日 2009-11-19 公開日 2010-01-26 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.918 Å) 主引用文献 Structural and biochemical characterization of CRN-5 and Rrp46: an exosome component participating in apoptotic DNA degradation Rna, 16, 2010
2FBK	The Crystal Structure of HucR from Deinococcus radiodurans 分子名称: CHLORIDE ION, transcriptional regulator, MarR family 著者 Bordelon, T, Wilkinson, S.P, Grove, A, Newcomer, M.E. 登録日 2005-12-09 公開日 2006-07-04 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The Crystal Structure of the Transcriptional Regulator HucR from Deinococcus radiodurans Reveals a Repressor Preconfigured for DNA Binding. J.Mol.Biol., 360, 2006
4M35	Crystal structure of gated-pore mutant H126/141D of second DNA-Binding protein under starvation from Mycobacterium smegmatis 分子名称: CHLORIDE ION, FE (II) ION, MAGNESIUM ION, ... 著者 Williams, S.M, Chandran, A.V, Vijayabaskar, M.S, Roy, S, Balaram, H, Vishveshwara, S, Vijayan, M, Chatterji, D. 登録日 2013-08-06 公開日 2014-03-05 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 A histidine aspartate ionic lock gates the iron passage in miniferritins from Mycobacterium smegmatis J.Biol.Chem., 289, 2014

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