PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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8SQU	Monomeric MapSPARTA bound with guide RNA and target DNA hybrid 分子名称: MAGNESIUM ION, TIR-APAZ, guide RNA, ... 著者 Shen, Z.F, Yang, X.Y, Fu, T.M. 登録日 2023-05-04 公開日 2023-08-23 最終更新日 2023-09-20 実験手法 ELECTRON MICROSCOPY (3.28 Å) 主引用文献 Oligomerization-mediated activation of a short prokaryotic Argonaute. Nature, 621, 2023
4U0Y	Crystal structure of the DNA-binding domains of YvoA in complex with palindromic operator DNA 分子名称: CHLORIDE ION, DNA (5'-D(P*GP*TP*GP*GP*TP*CP*TP*AP*GP*AP*CP*CP*AP*CP*T)-3'), HTH-type transcriptional repressor YvoA 著者 Fillenberg, S.B, Muller, Y.A. 登録日 2014-07-14 公開日 2015-01-14 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.91 Å) 主引用文献 Structural insight into operator dre-sites recognition and effector binding in the GntR/HutC transcription regulator NagR. Nucleic Acids Res., 43, 2015
4UZC	KSHV LANA (ORF73) C-terminal domain, spiral: hexagonal crystal form 分子名称: ORF 73 著者 Hellert, J, Krausze, J, Luhrs, T. 登録日 2014-09-05 公開日 2015-05-13 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.7 Å) 主引用文献 The 3D Structure of Kaposi Sarcoma Herpesvirus Lana C-Terminal Domain Bound to DNA. Proc.Natl.Acad.Sci.USA, 112, 2015
7CUI	Crystal structure of fission yeast Pot1 and Tpz1 分子名称: Protection of telomeres protein 1, Protection of telomeres protein tpz1, SULFATE ION 著者 Sun, H, Wu, Z, Wu, J, Lei, M. 登録日 2020-08-23 公開日 2021-08-25 最終更新日 2022-09-07 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural insights into Pot1-ssDNA, Pot1-Tpz1 and Tpz1-Ccq1 Interactions within fission yeast shelterin complex. Plos Genet., 18, 2022
8SOK	Cryo-EM structure of human CST bound to POT1(ESDL)/TPP1 in the presence of telomeric ssDNA 分子名称: CST complex subunit CTC1, CST complex subunit STN1, CST complex subunit TEN1, ... 著者 Cai, S.W. 登録日 2023-04-28 公開日 2023-06-07 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 POT1 recruits and regulates CST-Pol alpha /Primase at human telomeres. Biorxiv, 2023
8SV6	Structure of the M. smegmatis DarR protein 分子名称: Fatty acid metabolism regulator protein 著者 Schumacher, M.A. 登録日 2023-05-15 公開日 2023-11-01 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.56 Å) 主引用文献 Structures of the DarR transcription regulator reveal unique modes of second messenger and DNA binding. Nat Commun, 14, 2023
7CQ2	Crystal structure of Slx1-Slx4 分子名称: GLYCEROL, SLX4 isoform 1, Structure-specific endonuclease subunit SLX1, ... 著者 Xu, X, Wang, M, Sun, J, Li, G, Yang, N, Xu, R.M. 登録日 2020-08-08 公開日 2021-06-16 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure specific DNA recognition by the SLX1-SLX4 endonuclease complex. Nucleic Acids Res., 49, 2021
7CQ3	Crystal structure of Slx1-Slx4 分子名称: SLX4 isoform 1, SULFATE ION, Structure-specific endonuclease subunit SLX1, ... 著者 Xu, X, Wang, M, Sun, J, Li, G, Yang, N, Xu, R.M. 登録日 2020-08-08 公開日 2021-06-16 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.449 Å) 主引用文献 Structure specific DNA recognition by the SLX1-SLX4 endonuclease complex. Nucleic Acids Res., 49, 2021
7DEP	S. aureus SsbB with 5-FU 分子名称: 5-FLUOROURACIL, Single-stranded DNA-binding protein 著者 Lin, E.S, Huang, Y.H, Huang, C.Y. 登録日 2020-11-04 公開日 2020-12-23 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.094 Å) 主引用文献 Crystal structure of the single-stranded DNA-binding protein SsbB in complex with the anticancer drug 5-fluorouracil: Extension of the 5-fluorouracil interactome to include the oligonucleotide/oligosaccharide-binding fold protein Biochem.Biophys.Res.Commun., 534, 2020
7D8J	S. aureus SsbB with 5-FU 分子名称: 5-FLUOROURACIL, Single-stranded DNA-binding protein 著者 Lin, E.S, Huang, Y.H, Huang, C.Y. 登録日 2020-10-08 公開日 2020-12-23 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.88 Å) 主引用文献 Crystal structure of the single-stranded DNA-binding protein SsbB in complex with the anticancer drug 5-fluorouracil: Extension of the 5-fluorouracil interactome to include the oligonucleotide/oligosaccharide-binding fold protein Biochem.Biophys.Res.Commun., 534, 2020
6DEG	Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Bartonella birtlesii LL-WM9 分子名称: Beta sliding clamp 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2018-05-11 公開日 2018-05-30 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Bartonella birtlesii LL-WM9 To Be Published
4O68	Structure of human cyclic GMP-AMP synthase (cGAS) 分子名称: Cyclic GMP-AMP synthase, ZINC ION 著者 Zhang, X, Chen, Z, Zhang, X.W, Chen, Z.J. 登録日 2013-12-20 公開日 2014-02-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.436 Å) 主引用文献 The Cytosolic DNA Sensor cGAS Forms an Oligomeric Complex with DNA and Undergoes Switch-like Conformational Changes in the Activation Loop. Cell Rep, 6, 2014
4O67	Human cyclic GMP-AMP synthase (cGAS) in complex with GAMP 分子名称: Cyclic GMP-AMP synthase, ZINC ION, cGAMP 著者 Zhang, X, Chen, Z, Zhang, X.W, Chen, Z.J. 登録日 2013-12-20 公開日 2014-02-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.444 Å) 主引用文献 The Cytosolic DNA Sensor cGAS Forms an Oligomeric Complex with DNA and Undergoes Switch-like Conformational Changes in the Activation Loop. Cell Rep, 6, 2014
4O69	Human cyclic GMP-AMP synthase (cGAS) in complex with sulfate ion 分子名称: Cyclic GMP-AMP synthase, SULFATE ION, ZINC ION 著者 Zhang, X, Chen, Z, Zhang, X.W, Chen, Z.J. 登録日 2013-12-20 公開日 2014-02-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.252 Å) 主引用文献 The Cytosolic DNA Sensor cGAS Forms an Oligomeric Complex with DNA and Undergoes Switch-like Conformational Changes in the Activation Loop. Cell Rep, 6, 2014
3U05	Crystal structure of DB1804-D(CGCGAATTCGCG)2 complex 分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', 6-(1,4,5,6-tetrahydropyrimidin-2-yl)-2-[4'-(1,4,5,6-tetrahydropyrimidin-2-yl)biphenyl-4-yl]-1H-indole, MAGNESIUM ION 著者 Wei, D.G, Neidle, S. 登録日 2011-09-28 公開日 2012-09-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.27 Å) 主引用文献 Small-molecule binding to the DNA minor groove is mediated by a conserved water cluster. J.Am.Chem.Soc., 135, 2013
4OFA	Structural basis for thymine glycosylase activity on T:O6-methylG mismatch by methyl-CpG binding domain protein 4: Implications for roles of Arg468 in mismatch recognition and catalysis 分子名称: 12-mer DNA(G), 12-mer DNA(T), MAGNESIUM ION, ... 著者 Ouzon-Shubeita, H, Lin, Y.-L, Lee, S. 登録日 2014-01-14 公開日 2015-04-22 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Structure of MBD4 bound to G:T mispair DNA To be Published
8SP3	Asymmetric dimer of MapSPARTA bound with gRNA/tDNA hybrid 分子名称: MAGNESIUM ION, TIR-APAZ, guide RNA, ... 著者 Shen, Z.F, Yang, X.Y, Fu, T.M. 登録日 2023-05-01 公開日 2023-08-23 最終更新日 2023-09-20 実験手法 ELECTRON MICROSCOPY (3.52 Å) 主引用文献 Oligomerization-mediated activation of a short prokaryotic Argonaute. Nature, 621, 2023
8SP0	Symmetric dimer of MapSPARTA bound with gRNA/tDNA hybrid 分子名称: MAGNESIUM ION, TIR-APAZ, guide RNA, ... 著者 Shen, Z.F, Yang, X.Y, Fu, T.M. 登録日 2023-05-01 公開日 2023-08-23 最終更新日 2023-09-20 実験手法 ELECTRON MICROSCOPY (3.33 Å) 主引用文献 Oligomerization-mediated activation of a short prokaryotic Argonaute. Nature, 621, 2023
6D47	Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Mycobacterium marinum 分子名称: Beta sliding clamp 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2018-04-17 公開日 2018-05-02 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Mycobacterium marinum To Be Published
3KU0	Structure of GAP31 with adenine at its binding pocket 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENINE, Ribosome-inactivating protein gelonin 著者 Kong, X.-P. 登録日 2009-11-26 公開日 2010-01-26 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 A new activity of anti-HIV and anti-tumor protein GAP31: DNA adenosine glycosidase--structural and modeling insight into its functions. Biochem.Biophys.Res.Commun., 391, 2010
3KO2	I-MsoI re-designed for altered DNA cleavage specificity (-7C) 分子名称: 5'-D(*CP*GP*GP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*CP*GP*AP*CP*GP*GP*TP*CP*TP*GP*C)-3', 5'-D(*GP*CP*AP*GP*AP*CP*CP*GP*TP*CP*GP*TP*GP*AP*GP*AP*CP*AP*GP*TP*TP*CP*CP*G)-3', CALCIUM ION, ... 著者 Taylor, G.K, Stoddard, B.L. 登録日 2009-11-13 公開日 2010-05-19 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs. Nucleic Acids Res., 38, 2010
7CUJ	Crystal structure of fission yeast Ccq1 and Tpz1 分子名称: Coiled-coil quantitatively-enriched protein 1, Protection of telomeres protein tpz1 著者 Sun, H, Wu, Z, Wu, J, Lei, M. 登録日 2020-08-23 公開日 2021-08-25 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural insights into Pot1-ssDNA, Pot1-Tpz1 and Tpz1-Ccq1 Interactions within fission yeast shelterin complex. Plos Genet., 18, 2022
4FHC	Spore photoproduct lyase 分子名称: 1,2-ETHANEDIOL, IRON/SULFUR CLUSTER, SULFATE ION, ... 著者 Benjdia, A, Heil, K, Barends, T.R.M, Carell, T, Schlichting, I. 登録日 2012-06-06 公開日 2012-07-18 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural insights into recognition and repair of UV-DNA damage by Spore Photoproduct Lyase, a radical SAM enzyme. Nucleic Acids Res., 40, 2012
7COW	353 bp di-nucleosome harboring cohesive DNA termini with linker histone H1.0 分子名称: CALCIUM ION, CHLORIDE ION, DNA (353-MER), ... 著者 Adhireksan, Z, Sharma, D, Lee, P.L, Davey, C.A. 登録日 2020-08-05 公開日 2021-08-11 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.86 Å) 主引用文献 Engineering nucleosomes for generating diverse chromatin assemblies. Nucleic Acids Res., 49, 2021
2GAJ	Structure of Full Length Topoisomerase I from Thermotoga maritima in monoclinic crystal form 分子名称: DNA topoisomerase I 著者 Hansen, G. 登録日 2006-03-09 公開日 2006-04-25 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Crystal Structure of Full Length Topoisomerase I from Thermotoga maritima J.Mol.Biol., 358, 2006

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