PDB: 46200 件ウェブページステータス検索Chemie searchBIRD

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7DKN	Crystal structure of Sulfurisphaera tokodaii O6-methylguanine methyltransferase 分子名称: Methylated-DNA--protein-cysteine methyltransferase, SULFATE ION 著者 Kikuchi, M, Yamauchi, T, Iizuka, Y, Tsunoda, M. 登録日 2020-11-25 公開日 2021-12-01 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.79 Å) 主引用文献 Roles of the hydroxy group of tyrosine in crystal structures of Sulfurisphaera tokodaii O6-methylguanine-DNA methyltransferase. Acta Crystallogr.,Sect.F, 77, 2021
7DQR	Crystal structure of Sulfurisphaera tokodaii methylated O6-methylguanine methyltransferase 分子名称: Methylated-DNA--protein-cysteine methyltransferase, SULFATE ION 著者 Kikuchi, M, Yamauchi, T, Iizuka, Y, Tsonoda, M. 登録日 2020-12-24 公開日 2021-12-15 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.74 Å) 主引用文献 Roles of the hydroxy group of tyrosine in crystal structures of Sulfurisphaera tokodaii O6-methylguanine-DNA methyltransferase. Acta Crystallogr.,Sect.F, 77, 2021
7DQT	Crystal structure of O6-methylguanine methyltransferase Y91F variant 分子名称: Methylated-DNA--protein-cysteine methyltransferase, SULFATE ION 著者 Kikuchi, M, Iizuka, Y, Yamauchi, T, Tsunoda, M. 登録日 2020-12-24 公開日 2021-12-15 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.13 Å) 主引用文献 Roles of the hydroxy group of tyrosine in crystal structures of Sulfurisphaera tokodaii O6-methylguanine-DNA methyltransferase. Acta Crystallogr.,Sect.F, 77, 2021
4JD8	Racemic-[Ru(phen)2(dppz)]2+] bound to synthetic DNA at high resolution 分子名称: DNA (5'-D(*AP*TP*GP*CP*AP*T)-3'), Delta-Ru(phen)2(dppz) complex, Lambda-Ru(phen)2(dppz) complex, ... 著者 Cook, D.S, Hall, J.P, Cardin, C.J. 登録日 2013-02-24 公開日 2013-04-24 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.16 Å) 主引用文献 X-ray Crystal Structure of rac-[Ru(phen)2dppz](2+) with d(ATGCAT)2 Shows Enantiomer Orientations and Water Ordering. J.Am.Chem.Soc., 135, 2013
7ZES	Human SLFN11 dimer bound to ssDNA 分子名称: DNA (5'-D(P*CP*GP*CP*GP*T)-3'), MAGNESIUM ION, Schlafen family member 11, ... 著者 Metzner, F.J, Kugler, M, Wenzl, S.J, Lammens, K. 登録日 2022-03-31 公開日 2022-09-28 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Mechanistic understanding of human SLFN11. Nat Commun, 13, 2022
2DAU	DICKERSON-DREW DNA DODECAMER, NMR, MINIMIZED AVERAGE STRUCTURE 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 著者 Denisov, A, Bekiroglu, S, Maltseva, T, Sandstrom, A, Altmann, K.-H, Egli, M, Chattopadhyaya, J. 登録日 1998-01-20 公開日 1998-05-27 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The solution conformation of a carbocyclic analog of the Dickerson-Drew dodecamer: comparison with its own X-ray structure and that of the NMR structure of the native counterpart. J.Biomol.Struct.Dyn., 16, 1998
5CY1	Tn3 resolvase - site III complex crystal form I 分子名称: DNA (30-MER), Transposon Tn3 resolvase 著者 Montano, S.P, Rice, P.A. 登録日 2015-07-30 公開日 2017-01-11 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Tn3 resolvase - accessory site complexes: DNA geometry dictates complex geometry To Be Published
4I9V	The atomic structure of 5-Hydroxymethyl 2'-deoxycitidine base paired with 2'-deoxyguanosine in Dickerson Drew Dodecamer 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(5HC)P*GP*CP*G)-3'), MAGNESIUM ION, SPERMINE (FULLY PROTONATED FORM) 著者 Nocek, B, Szulik, M.W, Joachimiak, A, Stone, M.P. 登録日 2012-12-05 公開日 2013-11-20 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.02 Å) 主引用文献 Differential stabilities and sequence-dependent base pair opening dynamics of watson-crick base pairs with 5-hydroxymethylcytosine, 5-formylcytosine, or 5-carboxylcytosine. Biochemistry, 54, 2015
4HK6	Crystal structure of Cordyceps militaris IDCase in complex with 5-nitro-uracil 分子名称: 5-nitrouracil, Uracil-5-carboxylate decarboxylase, ZINC ION 著者 Xu, S, Zhu, J, Ding, J. 登録日 2012-10-15 公開日 2013-09-11 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structures of isoorotate decarboxylases reveal a novel catalytic mechanism of 5-carboxyl-uracil decarboxylation and shed light on the search for DNA decarboxylase. Cell Res., 23, 2013
4HK7	Crystal structure of Cordyceps militaris IDCase in complex with uracil 分子名称: URACIL, Uracil-5-carboxylate decarboxylase, ZINC ION 著者 Xu, S, Zhu, J, Ding, J. 登録日 2012-10-15 公開日 2013-09-11 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.189 Å) 主引用文献 Crystal structures of isoorotate decarboxylases reveal a novel catalytic mechanism of 5-carboxyl-uracil decarboxylation and shed light on the search for DNA decarboxylase. Cell Res., 23, 2013
4HK5	Crystal structure of Cordyceps militaris IDCase in apo form 分子名称: Uracil-5-carboxylate decarboxylase, ZINC ION 著者 Xu, S, Zhu, J, Ding, J. 登録日 2012-10-15 公開日 2013-09-11 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structures of isoorotate decarboxylases reveal a novel catalytic mechanism of 5-carboxyl-uracil decarboxylation and shed light on the search for DNA decarboxylase. Cell Res., 23, 2013
7CSM	Crystal structure of Sulfurisphaera tokodaii O6-methylguanine methyltransferase C120S variant 分子名称: Methylated-DNA--protein-cysteine methyltransferase, SULFATE ION 著者 Kikuchi, M, Yamauchi, T, Iizuka, Y, Tsunoda, M. 登録日 2020-08-15 公開日 2021-08-18 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Roles of the hydroxy group of tyrosine in crystal structures of Sulfurisphaera tokodaii O6-methylguanine-DNA methyltransferase. Acta Crystallogr.,Sect.F, 77, 2021
7D4V	Crystal structure of Sulfurisphaera tokodaii O6-methylguanine methyltransferase Y91F/C120S variant 分子名称: Methylated-DNA--protein-cysteine methyltransferase, SULFATE ION 著者 Kikuchi, M, Yamauchi, T, Iizuka, Y, Tsunoda, M. 登録日 2020-09-24 公開日 2021-09-29 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Roles of the hydroxy group of tyrosine in crystal structures of Sulfurisphaera tokodaii O6-methylguanine-DNA methyltransferase. Acta Crystallogr.,Sect.F, 77, 2021
7ZQL	d(CGCGTTAACGCG)2 B-DODECAMER AT 3100 BARS (310 MPa) 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION 著者 Prange, T. 登録日 2022-05-01 公開日 2023-03-08 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Behavior of B- and Z-DNA Crystals under High Hydrostatic Pressure Crystals, 2022
8D4Y	C-terminal SANT-SLIDE domain of human Chromodomain-helicase-DNA-binding protein 4 (CHD4) 分子名称: Chromodomain-helicase-DNA-binding protein 4 著者 Moghaddas Sani, H, Deshpande, C.N, Panjikar, S, Patel, K, Mackay, J.P. 登録日 2022-06-03 公開日 2022-12-21 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 The role of auxiliary domains in modulating CHD4 activity suggests mechanistic commonality between enzyme families. Nat Commun, 13, 2022
5B2I	Human nucleosome containing CpG unmethylated DNA 分子名称: DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Fujii, Y, Wakamori, M, Umehara, T, Yokoyama, S. 登録日 2016-01-16 公開日 2016-06-15 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystal structure of human nucleosome core particle containing enzymatically introduced CpG methylation. Febs Open Bio, 6, 2016
5B2J	Human nucleosome containing CpG methylated DNA 分子名称: DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Fujii, Y, Wakamori, M, Umehara, T, Yokoyama, S. 登録日 2016-01-18 公開日 2016-06-15 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structure of human nucleosome core particle containing enzymatically introduced CpG methylation. Febs Open Bio, 6, 2016
2LHO	Solution Structure of a DNA duplex Containing an Unnatural, Hydrophobic Base Pair 分子名称: DNA (5'-D(*CP*GP*TP*TP*TP*CP*(LHO)P*TP*TP*CP*TP*C)-3'), DNA (5'-D(*GP*AP*GP*AP*AP*(MM7)P*GP*AP*AP*AP*CP*G)-3') 著者 Malyshev, D.A, Pfaff, D.A, Ippoliti, S.L, Hwang, G.T, Dwyer, T.J, Romesberg, F.E. 登録日 2011-08-12 公開日 2012-07-04 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structure, mechanism of replication, and optimization of an unnatural base pair. Chemistry, 16, 2010
2LXQ	Monomeric PilE G-Quadruplex DNA from Neisseria Gonorrhoeae 分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*TP*GP*GP*GP*TP*GP*GP*GP*GP*AP*AP*T)-3') 著者 Kuryavyi, V.V, Patel, D.J. 登録日 2012-08-30 公開日 2012-11-28 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 RecA-Binding pilE G4 Sequence Essential for Pilin Antigenic Variation Forms Monomeric and 5' End-Stacked Dimeric Parallel G-Quadruplexes. Structure, 20, 2012
1OQ2	NMR structure of hemimethylated GATC site 分子名称: 5'-D(*CP*GP*CP*AP*GP*(6MA)P*TP*CP*TP*CP*GP*C)-3', 5'-D(*GP*CP*GP*AP*GP*AP*TP*CP*TP*GP*CP*G)-3' 著者 Bae, S.-H, Cheong, H.-K, Kang, S, Hwang, D.S, Cheong, C, Choi, B.-S. 登録日 2003-03-07 公開日 2004-04-27 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Structure and dynamics of hemimethylated GATC sites: implications for DNA-SeqA recognition J.Biol.Chem., 278, 2003
401D	STRUCTURE OF A DNA IN LOW SALT CONDITIONS D(GACCGCGGTC) 分子名称: DNA (5'-D(*GP*AP*CP*CP*GP*CP*GP*GP*TP*C)-3') 著者 Luo, M, Finley, J.B. 登録日 1998-06-02 公開日 1998-07-06 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 X-ray crystal structures of half the human papilloma virus E2 binding site: d(GACCGCGGTC). Nucleic Acids Res., 26, 1998
3PX7	Crystal Structure of covalent complex of topoisomerase 1A with substrate 分子名称: DNA 5'-D(*A*AP*TP*GP*CP*GP*CP*T)-3', DNA 5'-D(*TP*TP*GP*GP*G)-3', DNA topoisomerase, ... 著者 Zhang, Z, Tse-dinh, Y.C, Cheng, B. 登録日 2010-12-09 公開日 2011-04-20 最終更新日 2017-11-08 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure of E. coli Topoisomerase I Trapped as Covalent Complex Intermediate with Cleaved DNA To be Published
360D	STRUCTURE OF 2,5-BIS{[4-(N-ETHYLAMIDINO)PHENYL]}FURAN COMPLEXED TO 5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3'. A MINOR GROOVE DRUG COMPLEX, SHOWING PATTERNS OF GROOVE HYDRATION 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION, N,N'-(furan-2,5-diylbis{benzene-4,1-diyl[(Z)-aminomethylylidene]})diethanaminium 著者 Guerri, A, Simpson, I.J, Neidle, S. 登録日 1997-10-29 公開日 1998-07-16 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Visualisation of extensive water ribbons and networks in a DNA minor-groove drug complex. Nucleic Acids Res., 26, 1998
8F2Y	Structure of an alternating AT dodecamer: 5'-CGCGATATCGCG-3 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*TP*AP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION 著者 Ogbonna, E.N, Wilson, W.D. 登録日 2022-11-09 公開日 2023-02-22 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences. Acs Bio Med Chem Au, 3, 2023
8F94	Structure of an alternating AT 16-mer: 5'-GCTGGATATATCCAGC-3 分子名称: CALCIUM ION, DNA 16-mer 著者 Terrell, J.R, Ogbonna, E.N, Wilson, W.D. 登録日 2022-11-23 公開日 2023-02-22 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.08 Å) 主引用文献 X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences. Acs Bio Med Chem Au, 3, 2023

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