4I9V
The atomic structure of 5-Hydroxymethyl 2'-deoxycitidine base paired with 2'-deoxyguanosine in Dickerson Drew Dodecamer
Summary for 4I9V
Entry DOI | 10.2210/pdb4i9v/pdb |
Related | 355D |
Descriptor | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(5HC)P*GP*CP*G)-3'), MAGNESIUM ION, SPERMINE (FULLY PROTONATED FORM), ... (4 entities in total) |
Functional Keywords | 5-hydroxymethyl 2' deoxycitidine, 5-hydroxymethyl-dc adduct, modified ddd, dodecamer of b-dna, dna |
Biological source | Synthetic DNA |
Total number of polymer chains | 2 |
Total formula weight | 7823.89 |
Authors | Nocek, B.,Szulik, M.W.,Joachimiak, A.,Stone, M.P. (deposition date: 2012-12-05, release date: 2013-11-20, Last modification date: 2023-09-20) |
Primary citation | Szulik, M.W.,Pallan, P.S.,Nocek, B.,Voehler, M.,Banerjee, S.,Brooks, S.,Joachimiak, A.,Egli, M.,Eichman, B.F.,Stone, M.P. Differential stabilities and sequence-dependent base pair opening dynamics of watson-crick base pairs with 5-hydroxymethylcytosine, 5-formylcytosine, or 5-carboxylcytosine. Biochemistry, 54:1294-1305, 2015 Cited by PubMed: 25632825DOI: 10.1021/bi501534x PDB entries with the same primary citation |
Experimental method | X-RAY DIFFRACTION (1.02 Å) |
Structure validation
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