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4I9V

The atomic structure of 5-Hydroxymethyl 2'-deoxycitidine base paired with 2'-deoxyguanosine in Dickerson Drew Dodecamer

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(5HC)P*GP*CP*G)-3')polymer123693.42Synthetic DNA
2C
(A)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
3D, E
(B)
SPERMINE (FULLY PROTONATED FORM)non-polymer206.42Chemie (SPK)
4F, G
(A, B)
waterwater18.0187Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight7386.8
Non-Polymers*Number of molecules3
Total formula weight437.0
All*Total formula weight7823.9
*Water molecules are not included.

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PDB entries from 2025-12-17

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