5JLW
 
 | | AntpHD with 15bp DNA duplex R-monothioated at Cytidine-8 | | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*(C7R)P*AP*TP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3'), ... | | 著者 | White, M.A, Zandarashvili, L, Iwahara, J, Nguyen, D. | | 登録日 | 2016-04-27 | | 公開日 | 2016-06-22 | | 最終更新日 | 2023-09-27 | | 実験手法 | X-RAY DIFFRACTION (2.088 Å) | | 主引用文献 | Stereospecific Effects of Oxygen-to-Sulfur Substitution in DNA Phosphate on Ion Pair Dynamics and Protein-DNA Affinity.
Chembiochem, 17, 2016
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5JLX
 | | AntpHD with 15bp DNA duplex S-monothioated at Cytidine-8 | | 分子名称: | DNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*(C7S)P*AP*TP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3'), Homeotic protein antennapedia, ... | | 著者 | White, M.A, Zandarashvili, L, Iwahara, J, Nguyen, D. | | 登録日 | 2016-04-27 | | 公開日 | 2016-06-22 | | 最終更新日 | 2023-09-27 | | 実験手法 | X-RAY DIFFRACTION (2.748 Å) | | 主引用文献 | Stereospecific Effects of Oxygen-to-Sulfur Substitution in DNA Phosphate on Ion Pair Dynamics and Protein-DNA Affinity.
Chembiochem, 17, 2016
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6L4A
 | | H3-H3-H3 tri-nucleosome with the 22 base-pair linker DNA | | 分子名称: | DNA (485-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... | | 著者 | Takizawa, Y, Ho, C.-H, Tachiwana, H, Matsunami, H, Ohi, M, Wolf, M, Kurumizaka, H. | | 登録日 | 2019-10-16 | | 公開日 | 2019-12-04 | | 最終更新日 | 2024-03-27 | | 実験手法 | ELECTRON MICROSCOPY (12.3 Å) | | 主引用文献 | Cryo-EM Structures of Centromeric Tri-nucleosomes Containing a Central CENP-A Nucleosome.
Structure, 28, 2020
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6T78
 | | Structure of human Sox11 transcription factor in complex with a short DNA fragment | | 分子名称: | DNA (5'-D(*AP*AP*CP*AP*AP*AP*AP*TP*AP*AP*AP*CP*AP*AP*TP*A)-3'), DNA (5'-D(*TP*AP*TP*TP*GP*TP*TP*TP*AP*TP*TP*TP*TP*GP*TP*T)-3'), Transcription factor SOX-11 | | 著者 | Dodonova, S.O, Zhu, F, Dienemann, C, Taipale, J, Cramer, P. | | 登録日 | 2019-10-21 | | 公開日 | 2020-04-29 | | 最終更新日 | 2024-01-24 | | 実験手法 | X-RAY DIFFRACTION (2.504 Å) | | 主引用文献 | Nucleosome-bound SOX2 and SOX11 structures elucidate pioneer factor function.
Nature, 580, 2020
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1YR3
 | | Escherichia coli purine nucleoside phosphorylase II, the product of the xapA gene | | 分子名称: | SULFATE ION, XANTHINE, Xanthosine phosphorylase | | 著者 | Dandanell, G, Szczepanowski, R.H, Kierdaszuk, B, Shugar, D, Bochtler, M. | | 登録日 | 2005-02-03 | | 公開日 | 2005-04-19 | | 最終更新日 | 2023-08-23 | | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | | 主引用文献 | Escherichia coli purine nucleoside phosphorylase II, the product of the xapA gene
J.Mol.Biol., 348, 2005
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7OPI
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1YQU
 | | Escherichia coli purine nucleoside phosphorylase II, the product of the xapA gene | | 分子名称: | GUANINE, PHOSPHATE ION, Xanthosine phosphorylase | | 著者 | Dandanell, G, Szczepanowski, R.H, Kierdaszuk, B, Shugar, D, Bochtler, M. | | 登録日 | 2005-02-02 | | 公開日 | 2005-04-19 | | 最終更新日 | 2023-08-23 | | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | | 主引用文献 | Escherichia coli purine nucleoside phosphorylase II, the product of the xapA gene
J.Mol.Biol., 348, 2005
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9GMK
 | | SIRT7:H3K18DTU nucleosome complex | | 分子名称: | DNA (148-MER), Histone H2A type 2-A, Histone H2B type 1-J, ... | | 著者 | Moreno-Yruela, C, Ekundayo, B, Foteva, P, Calvino-Sanles, E, Ni, D, Stahlberg, H, Fierz, B. | | 登録日 | 2024-08-29 | | 公開日 | 2025-01-29 | | 最終更新日 | 2025-07-09 | | 実験手法 | ELECTRON MICROSCOPY (3.5 Å) | | 主引用文献 | Structural basis of SIRT7 nucleosome engagement and substrate specificity.
Nat Commun, 16, 2025
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1YQQ
 | | Escherichia coli purine nucleoside phosphorylase II, the product of the xapA gene | | 分子名称: | GUANINE, PHOSPHATE ION, Xanthosine phosphorylase | | 著者 | Dandanell, G, Szczepanowski, R.H, Kierdaszuk, B, Shugar, D, Bochtler, M. | | 登録日 | 2005-02-02 | | 公開日 | 2005-04-19 | | 最終更新日 | 2024-04-03 | | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | | 主引用文献 | Escherichia coli Purine Nucleoside Phosphorylase II, the Product of the xapA Gene
J.Mol.Biol., 348, 2005
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8YBJ
 | | Cryo-EM structure of human nucleosome core particle composed of the Widom 601 DNA sequence | | 分子名称: | DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... | | 著者 | Kimura, T, Hirai, S, Kujirai, T, Ogasawara, M, Takizawa, Y, Kurumizaka, H. | | 登録日 | 2024-02-14 | | 公開日 | 2024-07-24 | | 最終更新日 | 2024-09-11 | | 実験手法 | ELECTRON MICROSCOPY (2.38 Å) | | 主引用文献 | Cryo-EM structure and biochemical analyses of the nucleosome containing the cancer-associated histone H3 mutation E97K.
Genes Cells, 29, 2024
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3O4V
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1FL8
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7D20
 | | Cryo-EM structure of SET8-CENP-A-nucleosome complex | | 分子名称: | DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... | | 著者 | Ho, C.-H, Takizawa, Y, Kobayashi, W, Arimura, Y, Kurumizaka, H. | | 登録日 | 2020-09-15 | | 公開日 | 2021-02-10 | | 最終更新日 | 2024-03-27 | | 実験手法 | ELECTRON MICROSCOPY (3 Å) | | 主引用文献 | Structural basis of nucleosomal histone H4 lysine 20 methylation by SET8 methyltransferase.
Life Sci Alliance, 4, 2021
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7D1Z
 | | Cryo-EM structure of SET8-nucleosome complex | | 分子名称: | DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... | | 著者 | Ho, C.-H, Takizawa, Y, Kobayashi, W, Arimura, Y, Kurumizaka, H. | | 登録日 | 2020-09-15 | | 公開日 | 2021-02-10 | | 最終更新日 | 2024-03-27 | | 実験手法 | ELECTRON MICROSCOPY (3.15 Å) | | 主引用文献 | Structural basis of nucleosomal histone H4 lysine 20 methylation by SET8 methyltransferase.
Life Sci Alliance, 4, 2021
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7CCR
 | | Structure of the 2:2 cGAS-nucleosome complex | | 分子名称: | Cyclic GMP-AMP synthase, DNA (147-MER), Histone H2A type 1-B/E, ... | | 著者 | Cao, D, Han, X, Fan, X, Xu, R.M, Zhang, X. | | 登録日 | 2020-06-17 | | 公開日 | 2020-10-07 | | 最終更新日 | 2025-07-02 | | 実験手法 | ELECTRON MICROSCOPY (4.9 Å) | | 主引用文献 | Structural basis for nucleosome-mediated inhibition of cGAS activity.
Cell Res., 30, 2020
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7CCQ
 | | Structure of the 1:1 cGAS-nucleosome complex | | 分子名称: | Cyclic GMP-AMP synthase, DNA (147-MER), Histone H2A type 1-B/E, ... | | 著者 | Cao, D, Han, X, Fan, X, Xu, R.M, Zhang, X. | | 登録日 | 2020-06-17 | | 公開日 | 2020-10-07 | | 最終更新日 | 2025-06-25 | | 実験手法 | ELECTRON MICROSCOPY (3.8 Å) | | 主引用文献 | Structural basis for nucleosome-mediated inhibition of cGAS activity.
Cell Res., 30, 2020
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8HQY
 | | Cryo-EM structure of SSX1 bound to the H2AK119Ub nucleosome at a resolution of 3.05 angstrom | | 分子名称: | DNA (136-MER), DNA (137-MER), Histone H2A type 1-B/E, ... | | 著者 | Zebin, T, Ai, H.S, Ziyu, X, GuoChao, C, Man, P, Liu, L. | | 登録日 | 2022-12-14 | | 公開日 | 2023-09-27 | | 最終更新日 | 2025-07-02 | | 実験手法 | ELECTRON MICROSCOPY (3.05 Å) | | 主引用文献 | Synovial sarcoma X breakpoint 1 protein uses a cryptic groove to selectively recognize H2AK119Ub nucleosomes.
Nat.Struct.Mol.Biol., 31, 2024
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7XFN
 | | Structure of nucleosome-DI complex (-55I, Apo state) | | 分子名称: | DNA (152-MER), Histone H2A type 1, Histone H2B 1.1, ... | | 著者 | Zheng, L, Tsai, B, Gao, N. | | 登録日 | 2022-04-01 | | 公開日 | 2023-04-19 | | 最終更新日 | 2025-07-02 | | 実験手法 | ELECTRON MICROSCOPY (2.8 Å) | | 主引用文献 | Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome.
Cell Discov, 9, 2023
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7XFI
 | | Structure of nucleosome-DI complex (-50I, Apo state) | | 分子名称: | DNA (152-MER), Histone H2A type 1, Histone H2B 1.1, ... | | 著者 | Zheng, L, Tsai, B, Gao, N. | | 登録日 | 2022-04-01 | | 公開日 | 2023-04-19 | | 最終更新日 | 2025-06-25 | | 実験手法 | ELECTRON MICROSCOPY (2.9 Å) | | 主引用文献 | Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome.
Cell Discov, 9, 2023
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7XFM
 | | Structure of nucleosome-AAG complex (A-53I, post-catalytic state) | | 分子名称: | DNA (152-MER), DNA-3-methyladenine glycosylase, Histone H2A type 1, ... | | 著者 | Zheng, L, Tsai, B, Gao, N. | | 登録日 | 2022-04-01 | | 公開日 | 2023-04-19 | | 最終更新日 | 2025-06-25 | | 実験手法 | ELECTRON MICROSCOPY (3.1 Å) | | 主引用文献 | Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome.
Cell Discov, 9, 2023
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7XFC
 | | Structure of nucleosome-DI complex (-30I, Apo state) | | 分子名称: | DNA (152-MER), Histone H2A type 1, Histone H2B 1.1, ... | | 著者 | Zheng, L, Tsai, B, Gao, N. | | 登録日 | 2022-04-01 | | 公開日 | 2023-04-19 | | 最終更新日 | 2025-07-02 | | 実験手法 | ELECTRON MICROSCOPY (2.9 Å) | | 主引用文献 | Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome.
Cell Discov, 9, 2023
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3PHC
 | | Crystal Structure of Plasmodium falciparum purine nucleoside phosphorylase in complex with DADMe-ImmG | | 分子名称: | 2-amino-7-{[(3R,4R)-3-hydroxy-4-(hydroxymethyl)pyrrolidin-1-yl]methyl}-3,5-dihydro-4H-pyrrolo[3,2-d]pyrimidin-4-one, PHOSPHATE ION, POTASSIUM ION, ... | | 著者 | Ho, M, Edwards, A.A, Almo, S.C, Schramm, V.L. | | 登録日 | 2010-11-03 | | 公開日 | 2011-11-09 | | 最終更新日 | 2024-02-21 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Crystal Structure of Plasmodium falciparum purine nucleoside phosphorylase in complex with DADMe-ImmG
To be Published
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7OTQ
 | | Cryo-EM structure of ALC1/CHD1L bound to a PARylated nucleosome | | 分子名称: | Chromodomain-helicase-DNA-binding protein 1-like, DNA (149-MER) Widom 601 sequence, Histone H2A type 1, ... | | 著者 | Bacic, L, Gaullier, G, Deindl, S. | | 登録日 | 2021-06-10 | | 公開日 | 2021-09-15 | | 最終更新日 | 2024-07-17 | | 実験手法 | ELECTRON MICROSCOPY (4.8 Å) | | 主引用文献 | Structure and dynamics of the chromatin remodeler ALC1 bound to a PARylated nucleosome
Elife, 10, 2021
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3PHB
 | | Crystal Structure of human purine nucleoside phosphorylase in complex with DADMe-ImmG | | 分子名称: | 2-amino-7-{[(3R,4R)-3-hydroxy-4-(hydroxymethyl)pyrrolidin-1-yl]methyl}-3,5-dihydro-4H-pyrrolo[3,2-d]pyrimidin-4-one, PHOSPHATE ION, Purine nucleoside phosphorylase | | 著者 | Ho, M, Cassera, M.B, Murkin, A.S, Almo, S.C, Schramm, V.L. | | 登録日 | 2010-11-03 | | 公開日 | 2011-11-09 | | 最終更新日 | 2024-02-21 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Crystal Structure of human purine nucleoside phosphorylase in complex with DADMe-ImmG
to be published
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7XFJ
 | | Structure of nucleosome-AAG complex (T-50I, post-catalytic state) | | 分子名称: | DNA (152-MER), DNA-3-methyladenine glycosylase, Histone H2A type 1, ... | | 著者 | Zheng, L, Tsai, B, Gao, N. | | 登録日 | 2022-04-01 | | 公開日 | 2023-11-08 | | 最終更新日 | 2025-07-02 | | 実験手法 | ELECTRON MICROSCOPY (3 Å) | | 主引用文献 | Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome.
Cell Discov, 9, 2023
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