PDB: 183283 件ウェブページステータス検索Chemie searchBIRD

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7RFS	Structure of SARS-CoV-2 main protease in complex with a covalent inhibitor 分子名称: (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase 著者 Greasley, S.E, Ferre, R.A, Liu, W, Stewart, A.E. 登録日 2021-07-14 公開日 2021-11-10 最終更新日 2022-01-05 実験手法 X-RAY DIFFRACTION (1.91 Å) 主引用文献 An oral SARS-CoV-2 M pro inhibitor clinical candidate for the treatment of COVID-19. Science, 374, 2021
6QZ3	Structure of MHETase from Ideonella sakaiensis 分子名称: BENZOIC ACID, CALCIUM ION, Mono(2-hydroxyethyl) terephthalate hydrolase 著者 Allen, M.D, Johnson, C.W, Knott, B.C, Beckham, G.T, McGeehan, J.E. 登録日 2019-03-11 公開日 2020-09-30 最終更新日 2020-10-21 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Characterization and engineering of a two-enzyme system for plastics depolymerization. Proc.Natl.Acad.Sci.USA, 117, 2020
5LVP	Human PDK1 Kinase Domain in Complex with an HM-Peptide Bound to the PIF-Pocket 分子名称: 3-phosphoinositide-dependent protein kinase 1, ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, ... 著者 Schulze, J.O, Saladino, G, Busschots, K, Neimanis, S, Suess, E, Odadzic, D, Zeuzem, S, Hindie, V, Herbrand, A.K, Lisa, M.N, Alzari, P.M, Gervasio, F.L, Biondi, R.M. 登録日 2016-09-14 公開日 2016-10-19 最終更新日 2019-10-16 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Bidirectional Allosteric Communication between the ATP-Binding Site and the Regulatory PIF Pocket in PDK1 Protein Kinase. Cell Chem Biol, 23, 2016
6BHJ	Structure of HIV-1 Reverse Transcriptase Bound to a 38-mer Hairpin Template-Primer RNA-DNA Aptamer 分子名称: 38-MER RNA-DNA Aptamer, GLYCEROL, HIV-1 REVERSE TRANSCRIPTASE P51 subunit, ... 著者 Ruiz, F.X, Miller, M.T, Tuske, S, Das, K, Arnold, E. 登録日 2017-10-30 公開日 2018-10-31 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.81 Å) 主引用文献 Integrative Structural Biology Studies of HIV-1 Reverse Transcriptase Binding to a High-Affinity DNA Aptamer Curr Res Struct Biol, 2020
8FUH	Rubrerythrin from B. pseudomallei: apo form 分子名称: DI(HYDROXYETHYL)ETHER, Rubrerythrin 著者 Monteiro, D.C.F, Snell, M.E, Budziszewski, G.R, Bowman, S.E.J. 登録日 2023-01-17 公開日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.852 Å) 主引用文献 Rubrerythrin from B. pseudomallei: apo form To Be Published
6AVM	STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) TERNARY COMPLEX WITH A DOUBLE STRANDED DNA AND AN INCOMING D4TTP AT PH 9.5 WITH CROSS-LINKING TO SECOND BASE TEMPLATE OVERHANG 分子名称: 2',3'-DEHYDRO-2',3'-DEOXY-THYMIDINE 5'-TRIPHOSPHATE, DNA (27-MER), DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*(DDG))-3'), ... 著者 Martinez, S.E, Das, K, Arnold, E. 登録日 2017-09-03 公開日 2018-08-15 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.502 Å) 主引用文献 Structure of HIV-1 reverse transcriptase/d4TTP complex: Novel DNA cross-linking site and pH-dependent conformational changes. Protein Sci., 28, 2019
5KMG	Near-atomic cryo-EM structure of PRC1 bound to the microtubule 分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Kellogg, E.H, Howes, S, Ti, S.-C, Ramirez-Aportela, E, Kapoor, T.M, Chacon, P, Nogales, E. 登録日 2016-06-27 公開日 2016-08-03 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Near-atomic cryo-EM structure of PRC1 bound to the microtubule. Proc.Natl.Acad.Sci.USA, 113, 2016
1H24	CDK2/CyclinA in complex with a 9 residue recruitment peptide from E2F 分子名称: CELL DIVISION PROTEIN KINASE 2, CYCLIN A2, TRANSCRIPTION FACTOR E2F1 著者 Tews, I, Cheng, K.Y, Lowe, E.D, Noble, M.E.M, Brown, N.R, Gul, S, Gamblin, S, Johnson, L.N. 登録日 2002-07-31 公開日 2003-02-01 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Specificity Determinants of Recruitment Peptides Bound to Phospho-Cdk2/Cyclin A Biochemistry, 41, 2002
8EL2	SARS-CoV-2 RBD bound to neutralizing antibody Fab ICO-hu23 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab ICO-hu23 Heavy Chain, Fab ICO-hu23 Light Chain, ... 著者 Besaw, J.E, Kuo, A, Morizumi, T, Ernst, O.P. 登録日 2022-09-22 公開日 2023-07-19 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.89 Å) 主引用文献 Broadly neutralizing humanized SARS-CoV-2 antibody binds to a conserved epitope on Spike and provides antiviral protection through inhalation-based delivery in non-human primates. Plos Pathog., 19, 2023
5N9R	Crystal structure of USP7 in complex with a potent, selective and reversible small-molecule inhibitor 分子名称: 7-bromanyl-3-[[4-oxidanyl-1-[(3~{R})-3-phenylbutanoyl]piperidin-4-yl]methyl]thieno[3,2-d]pyrimidin-4-one, DIMETHYL SULFOXIDE, GLYCEROL, ... 著者 Harrison, T, Gavory, G, O'Dowd, C, Helm, M, Flasz, I, Arkoudis, E, Dossang, A, Hughes, C, Cassidy, E, McClelland, K, Odrzywol, E, Page, N, Barker, O, Miel, H. 登録日 2017-02-27 公開日 2017-12-06 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.23 Å) 主引用文献 Discovery and characterization of highly potent and selective allosteric USP7 inhibitors. Nat. Chem. Biol., 14, 2018
1H28	CDK2/CyclinA in complex with an 11-residue recruitment peptide from p107 分子名称: CELL DIVISION PROTEIN KINASE 2, CYCLIN A2, RETINOBLASTOMA-LIKE PROTEIN 1 著者 Tews, I, Cheng, K.Y, Lowe, E.D, Noble, M.E.M, Brown, N.R, Gul, S, Gamblin, S, Johnson, L.N. 登録日 2002-07-31 公開日 2003-02-01 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Specificity Determinants of Recruitment Peptides Bound to Phospho-Cdk2/Cyclin A Biochemistry, 41, 2002
7UTJ	Cryogenic electron microscopy 3D map of F-actin bound by human dimeric alpha-catenin 分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ... 著者 Rangarajan, E.S, Smith, E.W, Izard, T. 登録日 2022-04-27 公開日 2023-03-08 最終更新日 2023-03-29 実験手法 ELECTRON MICROSCOPY (2.77 Å) 主引用文献 Distinct inter-domain interactions of dimeric versus monomeric alpha-catenin link cell junctions to filaments. Commun Biol, 6, 2023
6AN8	STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) TERNARY COMPLEX WITH A DOUBLE STRANDED DNA AND AN INCOMING D4TTP AT PH 8.0 分子名称: 2',3'-DEHYDRO-2',3'-DEOXY-THYMIDINE 5'-TRIPHOSPHATE, DNA PRIMER (5'- D(*AP*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*GP)-3'), DNA TEMPLATE (5'- D(*AP*TP*GP*AP*AP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3'), ... 著者 Martinez, S.E, Das, K, Arnold, E. 登録日 2017-08-12 公開日 2018-08-15 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.596 Å) 主引用文献 Structure of HIV-1 reverse transcriptase/d4TTP complex: Novel DNA cross-linking site and pH-dependent conformational changes. Protein Sci., 28, 2019
6OF8	Structure of Thr354Asn, Glu355Gln, Thr412Asn, Ile414Met, Ile464His, and Phe467Met mutant human CamKII-alpha hub domain 分子名称: Calcium/calmodulin-dependent protein kinase type II subunit alpha, GLYCEROL, POTASSIUM ION 著者 McSpadden, E.D, Chi, C.C, Gee, C.L, Kuriyan, J. 登録日 2019-03-28 公開日 2019-04-17 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Variation in assembly stoichiometry in non-metazoan homologs of the hub domain of Ca2+/calmodulin-dependent protein kinase II. Protein Sci., 28, 2019
7U29	Structure of SARS-CoV-2 Mpro mutant (K90R) in complex with Nirmatrelvir (PF-07321332) 分子名称: (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase nsp5 著者 Greasley, S.E, Ferre, R.A, Liu, W, Stewart, A.E. 登録日 2022-02-23 公開日 2022-03-09 最終更新日 2022-06-15 実験手法 X-RAY DIFFRACTION (2.088 Å) 主引用文献 Structural basis for the in vitro efficacy of nirmatrelvir against SARS-CoV-2 variants. J.Biol.Chem., 298, 2022
7U28	Structure of SARS-CoV-2 Mpro Lambda (G15S) in complex with Nirmatrelvir (PF-07321332) 分子名称: (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase nsp5 著者 Greasley, S.E, Ferre, R.A, Plotnikova, O, Liu, W, Stewart, A.E. 登録日 2022-02-23 公開日 2022-03-09 最終更新日 2022-06-15 実験手法 X-RAY DIFFRACTION (1.679 Å) 主引用文献 Structural basis for the in vitro efficacy of nirmatrelvir against SARS-CoV-2 variants. J.Biol.Chem., 298, 2022
1GY3	pCDK2/cyclin A in complex with MgADP, nitrate and peptide substrate 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CELL DIVISION PROTEIN KINASE 2, CYCLIN A2, ... 著者 Cook, A, Lowe, E.D, Chrysina, E.D, Skamnaki, V.T, Oikonomakos, N.G, Johnson, L.N. 登録日 2002-04-19 公開日 2002-04-29 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural Studies on Phospho-Cdk2/Cyclin a Bound to Nitrate, a Transition State Analogue: Implications for the Protein Kinase Mechanism Biochemistry, 41, 2002
5IRV	Human cytochrome P450 17A1 bound to inhibitor VT-464 分子名称: PROTOPORPHYRIN IX CONTAINING FE, Steroid 17-alpha-hydroxylase/17,20 lyase, VT-464 著者 Scott, E.E, Petrunak, E.M. 登録日 2016-03-14 公開日 2017-03-15 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.098 Å) 主引用文献 Structural and Functional Evaluation of Clinically Relevant Inhibitors of Steroidogenic Cytochrome P450 17A1. Drug Metab. Dispos., 45, 2017
8OF4	Nucleosome Bound human SIRT6 (Composite) 分子名称: DNA (145-MER), Histone H2A type 1, Histone H2B, ... 著者 Smirnova, E, Bignon, E, Schultz, P, Papai, G, Ben-Shem, A. 登録日 2023-03-13 公開日 2023-08-09 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (2.94 Å) 主引用文献 Binding to nucleosome poises human SIRT6 for histone H3 deacetylation. Elife, 12, 2024
1H27	CDK2/CyclinA in complex with an 11-residue recruitment peptide from p27 分子名称: CELL DIVISION PROTEIN KINASE 2, CYCLIN A2, CYCLIN-DEPENDENT KINASE INHIBITOR 1B 著者 Tews, I, Cheng, K.Y, Lowe, E.D, Noble, M.E.M, Brown, N.R, Gul, S, Gamblin, S, Johnson, L.N. 登録日 2002-07-31 公開日 2003-02-01 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Specificity Determinants of Recruitment Peptides Bound to Phospho-Cdk2/Cyclin A Biochemistry, 41, 2002
1GSZ	Crystal Structure of a Squalene Cyclase in Complex with the Potential Anticholesteremic Drug Ro48-8071 分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, SQUALENE--HOPENE CYCLASE, [4-({6-[ALLYL(METHYL)AMINO]HEXYL}OXY)-2-FLUOROPHENYL](4-BROMOPHENYL)METHANONE 著者 Lenhart, A, Weihofen, W.A, Pleschke, A.E.W, Schulz, G.E. 登録日 2002-01-09 公開日 2003-01-16 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal Structure of a Squalene Cyclase in Complex with the Potential Anticholesteremic Drug Ro48-8071 Chem.Biol., 9, 2002
8QT5	Crystal structure of Arabidopsis thaliana 14-3-3 isoform lambda in complex with a phosphopeptide from the transcription factor BZR1. 分子名称: 14-3-3-like protein G-BOX factor 14 lambda,Protein BRASSINAZOLE-RESISTANT 1, ACETATE ION 著者 Hothorn, M, Obergfell, E. 登録日 2023-10-12 公開日 2023-10-25 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (2.69 Å) 主引用文献 Mechanistic insights into the function of 14-3-3 proteins as negative regulators of brassinosteroid signaling in Arabidopsis. Plant Cell.Physiol., 2024
6WYE	Crystal structure of Neisseria gonorrhoeae serine acetyltransferase (CysE) 分子名称: (2S)-2-hydroxybutanedioic acid, SODIUM ION, Serine acetyltransferase 著者 Hicks, J.L, Oldham, K.E, Summers, E.L, Prentice, E.J. 登録日 2020-05-12 公開日 2021-06-09 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.01 Å) 主引用文献 Serine acetyltransferase from Neisseria gonorrhoeae; structural and biochemical basis of inhibition. Biochem.J., 479, 2022
8UCU	Partial DNA termination subcomplex of Xenopus laevis DNA polymerase alpha-primase 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA polymerase alpha catalytic subunit, DNA template, ... 著者 Mullins, E.A, Chazin, W.J, Eichman, B.F. 登録日 2023-09-27 公開日 2023-10-11 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (2.85 Å) 主引用文献 A mechanistic model of primer synthesis from catalytic structures of DNA polymerase alpha-primase. Nat.Struct.Mol.Biol., 31, 2024
8UCW	Complete DNA termination subcomplex 2 of Xenopus laevis DNA polymerase alpha-primase 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA polymerase alpha catalytic subunit, DNA template, ... 著者 Mullins, E.A, Chazin, W.C, Eichman, B.F. 登録日 2023-09-27 公開日 2023-10-11 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.64 Å) 主引用文献 A mechanistic model of primer synthesis from catalytic structures of DNA polymerase alpha-primase. Nat.Struct.Mol.Biol., 31, 2024

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