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2CS2
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BU of 2cs2 by Molmil
Solution structure of the second Zn-finger domain of poly(ADP-ribose) polymerase-1
分子名称: Poly [ADP-ribose] polymerase-1, ZINC ION
著者Nagashima, T, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-05-20
公開日2005-11-20
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the second Zn-finger domain of poly(ADP-ribose) polymerase-1
To be published
7U4D
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BU of 7u4d by Molmil
CryoEM structure of CENP-N promoted nucleosome stacks with CENP-A and 601 DNA sequence
分子名称: Centromere protein N, DNA (147-MER), Histone H2A, ...
著者Zhou, K, Luger, K.
登録日2022-02-28
公開日2022-03-30
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (8.1 Å)
主引用文献CENP-N promotes the compaction of centromeric chromatin.
Nat.Struct.Mol.Biol., 29, 2022
7TRF
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BU of 7trf by Molmil
Human telomerase catalytic core RNP with H2A/H2B
分子名称: Histone H2A, Histone H2B type 1-C/E/F/G/I, Telomerase RNA, ...
著者Liu, B, He, Y, Wang, Y, Song, H, Zhou, Z.H, Feigon, J.
登録日2022-01-28
公開日2022-04-20
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structure of active human telomerase with telomere shelterin protein TPP1.
Nature, 604, 2022
7TQL
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BU of 7tql by Molmil
CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.
分子名称: 18S ribosomal RNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ...
著者Lapointe, C.P, Grosely, R, Sokabe, M, Alvarado, C, Wang, J, Montabana, E, Villa, N, Shin, B, Dever, T, Fraser, C, Fernandez, I.S, Puglisi, J.D.
登録日2022-01-26
公開日2022-04-27
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献eIF5B and eIF1A reorient initiator tRNA to allow ribosomal subunit joining.
Nature, 607, 2022
3W98
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BU of 3w98 by Molmil
Crystal Structure of Human Nucleosome Core Particle lacking H3.1 N-terminal region
分子名称: 146-mer DNA, Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Iwasaki, W, Miya, Y, Horikoshi, N, Osakabe, A, Tachiwana, H, Shibata, T, Kagawa, W, Kurumizaka, H.
登録日2013-04-01
公開日2013-08-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.42 Å)
主引用文献Contribution of histone N-terminal tails to the structure and stability of nucleosomes
FEBS Open Bio, 3, 2013
7SYO
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BU of 7syo by Molmil
Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)
分子名称: 18S rRNA, 40S ribosomal protein S2, HCV IRES, ...
著者Brown, Z.P, Abaeva, I.S, De, S, Hellen, C.U.T, Pestova, T.V, Frank, J.
登録日2021-11-25
公開日2022-07-27
最終更新日2022-08-24
実験手法ELECTRON MICROSCOPY (4.6 Å)
主引用文献Molecular architecture of 40S translation initiation complexes on the hepatitis C virus IRES.
Embo J., 41, 2022
7SYS
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BU of 7sys by Molmil
Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).
分子名称: 18S rRNA, Eukaryotic translation initiation factor 1A, X-chromosomal, ...
著者Brown, Z.P, Abaeva, I.S, De, S, Hellen, C.U.T, Pestova, T.V, Frank, J.
登録日2021-11-25
公開日2022-07-27
最終更新日2022-08-24
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Molecular architecture of 40S translation initiation complexes on the hepatitis C virus IRES.
Embo J., 41, 2022
7SYQ
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BU of 7syq by Molmil
Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)
分子名称: 18S rRNA, Eukaryotic translation initiation factor 1A, X-chromosomal, ...
著者Brown, Z.P, Abaeva, I.S, De, S, Hellen, C.U.T, Pestova, T.V, Frank, J.
登録日2021-11-25
公開日2022-07-27
最終更新日2022-08-24
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Molecular architecture of 40S translation initiation complexes on the hepatitis C virus IRES.
Embo J., 41, 2022
7SYR
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BU of 7syr by Molmil
Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).
分子名称: 18S rRNA, Eukaryotic translation initiation factor 1A, X-chromosomal, ...
著者Brown, Z.P, Abaeva, I.S, De, S, Hellen, C.U.T, Pestova, T.V, Frank, J.
登録日2021-11-25
公開日2022-07-27
最終更新日2022-08-24
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Molecular architecture of 40S translation initiation complexes on the hepatitis C virus IRES.
Embo J., 41, 2022
7SP0
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BU of 7sp0 by Molmil
Crystal structure of human SFPQ L534I mutant in complex with zinc
分子名称: Splicing factor, proline- and glutamine-rich, ZINC ION
著者Lee, M.
登録日2021-11-01
公開日2022-10-12
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Familial ALS-associated SFPQ variants promote the formation of SFPQ cytoplasmic aggregates in primary neurons.
Open Biology, 12, 2022
3W97
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BU of 3w97 by Molmil
Crystal Structure of Human Nucleosome Core Particle lacking H2B N-terminal region
分子名称: 146-mer DNA, Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Iwasaki, W, Miya, Y, Horikoshi, N, Osakabe, A, Tachiwana, H, Shibata, T, Kagawa, W, Kurumizaka, H.
登録日2013-04-01
公開日2013-08-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Contribution of histone N-terminal tails to the structure and stability of nucleosomes
FEBS Open Bio, 3, 2013
5MRG
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BU of 5mrg by Molmil
Solution structure of TDP-43 (residues 1-102)
分子名称: TAR DNA-binding protein 43
著者Mompean, M, Romano, V, Pantoja-Uceda, D, Stuani, C, Baralle, F.E, Laurents, D.V.
登録日2016-12-22
公開日2017-06-07
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Point mutations in the N-terminal domain of transactive response DNA-binding protein 43 kDa (TDP-43) compromise its stability, dimerization, and functions.
J. Biol. Chem., 292, 2017
7SCY
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BU of 7scy by Molmil
Nuc147 bound to single BRCT
分子名称: DNA (147-MER), Histone H2A, Histone H2B type 1-J, ...
著者Muthurajan, U.M, Rudolph, J.R.
登録日2021-09-29
公開日2022-01-12
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献The BRCT domain of PARP1 binds intact DNA and mediates intrastrand transfer.
Mol.Cell, 81, 2021
7SCZ
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BU of 7scz by Molmil
Nuc147 bound to multiple BRCTs
分子名称: DNA (147-MER), Histone H2A, Histone H2B type 1-J, ...
著者Muthurajan, U.M, Rudolph, J.
登録日2021-09-29
公開日2022-01-19
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献The BRCT domain of PARP1 binds intact DNA and mediates intrastrand transfer.
Mol.Cell, 81, 2021
7TOR
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BU of 7tor by Molmil
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ...
著者Loveland, A.B, Svidritskiy, E, Susorov, D, Lee, S, Park, A, Zvornicanin, S, Demo, G, Gao, F.B, Korostelev, A.A.
登録日2022-01-24
公開日2022-05-25
最終更新日2022-06-01
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Ribosome inhibition by C9ORF72-ALS/FTD-associated poly-PR and poly-GR proteins revealed by cryo-EM.
Nat Commun, 13, 2022
3V5B
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BU of 3v5b by Molmil
Structure of Coil 2b of human lamin
分子名称: Prelamin-A/C
著者Bollati, M, Bolognesi, M.
登録日2011-12-16
公開日2012-02-22
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structures of the lamin A/C R335W and E347K mutants: Implications for dilated cardiolaminopathies.
Biochem.Biophys.Res.Commun., 418, 2012
7U51
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BU of 7u51 by Molmil
Nucleosome core particle with AP-site at SHL-6
分子名称: DNA (145-MER), Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, ...
著者Freudenthal, B.D, Weaver, T.M.
登録日2022-03-01
公開日2022-09-07
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural basis for APE1 processing DNA damage in the nucleosome.
Nat Commun, 13, 2022
7U50
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BU of 7u50 by Molmil
APE1 bound to a nucleosome core particle with AP-site at SHL-6
分子名称: DNA (144-MER), DNA (145-MER), DNA-(apurinic or apyrimidinic site) endonuclease, ...
著者Weaver, T.M, Freudenthal, B.D.
登録日2022-03-01
公開日2022-09-07
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural basis for APE1 processing DNA damage in the nucleosome.
Nat Commun, 13, 2022
7U52
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BU of 7u52 by Molmil
nucleosome core particle with AP-site at SHL-6.5
分子名称: DNA (145-MER), Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, ...
著者Freudenthal, B.D, Weaver, T.M.
登録日2022-03-01
公開日2022-09-07
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural basis for APE1 processing DNA damage in the nucleosome.
Nat Commun, 13, 2022
7U53
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BU of 7u53 by Molmil
Nucleosome core particle with AP-site at SHL0
分子名称: DNA (144-MER), Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, ...
著者Freudenthal, B.D, Weaver, T.M.
登録日2022-03-01
公開日2022-09-07
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structural basis for APE1 processing DNA damage in the nucleosome.
Nat Commun, 13, 2022
7TUJ
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BU of 7tuj by Molmil
NMR solution structure of the phosphorylated MUS81-binding region from human SLX4
分子名称: Structure-specific endonuclease subunit SLX4
著者Payliss, B.J, Reichheld, S.E, Lemak, A, Arrowsmith, C.H, Sharpe, S, Wyatt, H.D.M.
登録日2022-02-02
公開日2022-10-19
最終更新日2022-11-09
実験手法SOLUTION NMR
主引用文献Phosphorylation of the DNA repair scaffold SLX4 drives folding of the SAP domain and activation of the MUS81-EME1 endonuclease.
Cell Rep, 41, 2022
3UVX
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BU of 3uvx by Molmil
Crystal Structure of the first bromodomain of human BRD4 in complex with a diacetylated histone 4 peptide (H4K12acK16ac)
分子名称: 1,2-ETHANEDIOL, Bromodomain-containing protein 4, FORMIC ACID, ...
著者Filippakopoulos, P, Picaud, S, Keates, T, Ugochukwu, E, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Weigelt, J, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
登録日2011-11-30
公開日2012-01-25
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Histone recognition and large-scale structural analysis of the human bromodomain family.
Cell(Cambridge,Mass.), 149, 2012
2CUF
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BU of 2cuf by Molmil
Solution structure of the homeobox domain of the human hypothetical protein FLJ21616
分子名称: FLJ21616 protein
著者Ohnishi, S, Kigawa, T, Tomizawa, T, Koshiba, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-05-26
公開日2005-11-26
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the homeobox domain of the human hypothetical protein FLJ21616
To be Published
3X1U
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BU of 3x1u by Molmil
Crystal structure of nucleosome core particle in the presence of histone variants involved in reprogramming
分子名称: CHLORIDE ION, DNA (146-MER), Histone H2A, ...
著者Sivaraman, P, Kumarevel, T.S.
登録日2014-11-28
公開日2015-09-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.25 Å)
主引用文献Structural and functional analyses of nucleosome complexes with mouse histone variants TH2a and TH2b, involved in reprogramming.
Biochem.Biophys.Res.Commun., 464, 2015
2CV5
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BU of 2cv5 by Molmil
Crystal structure of human nucleosome core particle
分子名称: CHLORIDE ION, DNA (146-MER), Histone H2A.a, ...
著者Tsunaka, Y, Kajimura, N, Tate, S, Morikawa, K.
登録日2005-05-31
公開日2005-06-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Alteration of the nucleosomal DNA path in the crystal structure of a human nucleosome core particle
Nucleic Acids Res., 33, 2005

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