PDB: 10619 件ウェブページステータス検索Chemie searchBIRD

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7UL1	Crystal structure of SARS-CoV-2 RBD in complex with the neutralizing IGHV3-53-encoded antibody EH3 isolated from a nonvaccinated pediatric patient 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of EH3, Light chain of EH3, ... 著者 Chen, Y, Tolbert, W.D, Pazgier, M. 登録日 2022-04-03 公開日 2023-03-08 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Molecular basis for antiviral activity of two pediatric neutralizing antibodies targeting SARS-CoV-2 Spike RBD. Iscience, 26, 2023
7UL0	Crystal structure of SARS-CoV-2 RBD in complex with the ridge-binding nAb EH8 isolated from a nonvaccinated pediatric patient 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of EH8, ... 著者 Chen, Y, Tolbert, W.D, Bai, X, Pazgier, M. 登録日 2022-04-03 公開日 2023-03-08 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.49 Å) 主引用文献 Molecular basis for antiviral activity of two pediatric neutralizing antibodies targeting SARS-CoV-2 Spike RBD. Iscience, 26, 2023
4UUD	Human dynamin 1 K44A superconstricted polymer stabilized with GTP 分子名称: DYNAMIN-1 著者 Sundborger, A.C, Fang, S, Heymann, J.A, Ray, P, Chappie, J.S, Hinshaw, J.E. 登録日 2014-07-25 公開日 2014-08-27 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (12.5 Å) 主引用文献 A Dynamin Mutant Defines a Superconstricted Prefission State. Cell Rep., 8, 2014
6WUP	Crystal structure of an ancestral cyclohexadienyl dehydratase, AncCDT-5 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Ancestral cyclohexadienyl dehydratase, AncCDT-5, ... 著者 Kaczmarski, J.A, Mahawaththa, M.C. 登録日 2020-05-05 公開日 2020-05-13 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.49 Å) 主引用文献 Altered conformational sampling along an evolutionary trajectory changes the catalytic activity of an enzyme. Nat Commun, 11, 2020
4WBC	2.13 A STRUCTURE OF A KUNITZ-TYPE WINGED BEAN CHYMOTRYPSIN INHIBITOR PROTEIN 分子名称: PROTEIN (CHYMOTRYPSIN INHIBITOR), SULFATE ION 著者 Ravichandran, S, Sen, U, Chakrabarti, C, Dattagupta, J.K. 登録日 1999-03-04 公開日 1999-03-12 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.138 Å) 主引用文献 Cryocrystallography of a Kunitz-type serine protease inhibitor: the 90 K structure of winged bean chymotrypsin inhibitor (WCI) at 2.13 A resolution. Acta Crystallogr.,Sect.D, 55, 1999
6WPZ	The structure of Pf4r from a superinfective isolate of the filamentous phage Pf4 of Pseudomonas aeruginosa PA01 分子名称: CHLORIDE ION, Pf4r 著者 Michie, K.A, Norrian, P, Duggin, I.G, McDougald, D, Rice, S.A. 登録日 2020-04-28 公開日 2021-04-07 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.993 Å) 主引用文献 The Repressor C Protein, Pf4r, Controls Superinfection of Pseudomonas aeruginosa PAO1 by the Pf4 Filamentous Phage and Regulates Host Gene Expression. Viruses, 13, 2021
4V7I	Ribosome-SecY complex. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Gumbart, J.C, Trabuco, L.G, Schreiner, E, Villa, E, Schulten, K. 登録日 2009-10-21 公開日 2014-07-09 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (9.6 Å) 主引用文献 Regulation of the protein-conducting channel by a bound ribosome. Structure, 17, 2009
4WFZ	Coxsackievirus B3 3Dpol RNA Dependent RNA Polymerase - NaCl Crystal Form 分子名称: RNA-directed RNA polymerase, SODIUM ION 著者 Peersen, O.B, McDonald, S.M. 登録日 2014-09-17 公開日 2014-10-22 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.803 Å) 主引用文献 Structure-Function Relationships Underlying the Replication Fidelity of Viral RNA-Dependent RNA Polymerases. J.Virol., 89, 2015
4WFY	Coxsackievirus B3 Polymerase - F232L Mutant - AmSO4 Crystal Form 分子名称: GLYCEROL, RNA-directed RNA polymerase, SULFATE ION 著者 Peersen, O.B, McDonald, S.M. 登録日 2014-09-17 公開日 2014-10-22 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.06 Å) 主引用文献 Structure-Function Relationships Underlying the Replication Fidelity of Viral RNA-Dependent RNA Polymerases. J.Virol., 89, 2015
3G46	Ligand migration and cavities within scapharca dimeric hemoglobin: wild type with co bound to heme and chloroform bound to the XE4 cavity 分子名称: CARBON MONOXIDE, Globin-1, PROTOPORPHYRIN IX CONTAINING FE, ... 著者 Knapp, J.E, Pahl, R, Cohen, J, Nichols, J.C, Schulten, K, Gibson, Q.H, Srajer, V, Royer Jr, W.E. 登録日 2009-02-03 公開日 2009-12-01 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (0.91 Å) 主引用文献 Ligand migration and cavities within Scapharca Dimeric HbI: studies by time-resolved crystallo-graphy, Xe binding, and computational analysis. Structure, 17, 2009
3G4Q	Ligand migration and cavities within scapharca dimeric hemoglobin: wild type with co bound to heme and chloroform bound to the XE4 cavity 分子名称: CARBON MONOXIDE, Globin-1, PROTOPORPHYRIN IX CONTAINING FE, ... 著者 Knapp, J.E, Pahl, R, Cohen, J, Nichols, J.C, Schulten, K, Gibson, Q.H, Srajer, V, Royer Jr, W.E. 登録日 2009-02-04 公開日 2009-12-01 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Ligand migration and cavities within Scapharca Dimeric HbI: studies by time-resolved crystallo-graphy, Xe binding, and computational analysis. Structure, 17, 2009
3G4U	Ligand migration and cavities within scapharca dimeric hemoglobin: wild type with co bound to heme and dichloropropane bound to the XE4 cavity 分子名称: 1,3-dichloropropane, CARBON MONOXIDE, GLOBIN-1, ... 著者 Knapp, J.E, Pahl, R, Cohen, J, Nichols, J.C, Schulten, K, Gibson, Q.H, Srajer, V, Royer Jr, W.E. 登録日 2009-02-04 公開日 2009-12-01 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Ligand migration and cavities within Scapharca Dimeric HbI: studies by time-resolved crystallo-graphy, Xe binding, and computational analysis. Structure, 17, 2009
7URU	Crystal structure of the low affinity Fc gamma receptor IIIA variant in complex with the Fc of IgG1. 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Immunoglobulin gamma-1 heavy chain, ... 著者 Tolbert, W.D, Pazgier, M. 登録日 2022-04-22 公開日 2023-04-26 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structure of the low affinity Fc gamma receptor IIIA variant in complex with the Fc of IgG1. To Be Published
7UOJ	The CryoEM structure of N49-P9.6-FR3 and PGT121 Fabs in complex with BG505 SOSIP.664 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ... 著者 Nguyen, D.N, Tolbert, W.D, Pazgier, M. 登録日 2022-04-13 公開日 2023-05-03 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (4.02 Å) 主引用文献 The structure of N49-P9.6-FR3 and PGT121 Fabs in complex with BG505 SOSIP To Be Published
7UI2	The crystal structure of 15kDa Phlebotomus papatasi salivary protein Ppsp15. 分子名称: ACETATE ION, SP15 protein 著者 Tolbert, W.D, Pazgier, M. 登録日 2022-03-28 公開日 2023-04-05 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.19 Å) 主引用文献 The crystal structure of 15kDa Phlebotomus papatasi salivary protein Ppsp15. To Be Published
3G4V	Ligand migration and cavities within scapharca dimeric hemoglobin: wild type with co bound to heme and chloropentane bound to the XE4 cavity 分子名称: 1-chloropentane, CARBON MONOXIDE, GLOBIN-1, ... 著者 Knapp, J.E, Pahl, R, Cohen, J, Nichols, J.C, Schulten, K, Gibson, Q.H, Srajer, V, Royer Jr, W.E. 登録日 2009-02-04 公開日 2009-12-01 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Ligand migration and cavities within Scapharca Dimeric HbI: studies by time-resolved crystallo-graphy, Xe binding, and computational analysis. Structure, 17, 2009
3G4R	Ligand migration and cavities within scapharca dimeric hemoglobin: wild type with co bound to HEME and dichloroethane bound to the XE4 cavity 分子名称: 1,2-DICHLOROETHANE, CARBON MONOXIDE, Globin-1, ... 著者 Knapp, J.E, Pahl, R, Cohen, J, Nichols, J.C, Schulten, K, Gibson, Q.H, Srajer, V, Royer Jr, W.E. 登録日 2009-02-04 公開日 2009-12-01 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Ligand migration and cavities within Scapharca Dimeric HbI: studies by time-resolved crystallo-graphy, Xe binding, and computational analysis. Structure, 17, 2009
3GUN	T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--aniline binding 分子名称: ANILINE, CALCIUM ION, CHLORIDE ION, ... 著者 Liu, L, Matthews, B.W. 登録日 2009-03-30 公開日 2009-08-25 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme. Biochemistry, 48, 2009
3GUM	T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--p-xylene binding 分子名称: ACETATE ION, CALCIUM ION, CHLORIDE ION, ... 著者 Liu, L, Matthews, B.W. 登録日 2009-03-30 公開日 2009-08-25 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.24 Å) 主引用文献 Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme. Biochemistry, 48, 2009
3GUO	T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--phenol binding 分子名称: CALCIUM ION, CHLORIDE ION, Lysozyme, ... 著者 Liu, L, Matthews, B.W. 登録日 2009-03-30 公開日 2009-08-25 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.16 Å) 主引用文献 Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme. Biochemistry, 48, 2009
3GUI	T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--Apo structure 分子名称: BETA-MERCAPTOETHANOL, CARBONATE ION, Lysozyme, ... 著者 Liu, L, Matthews, B.W. 登録日 2009-03-30 公開日 2009-08-25 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme. Biochemistry, 48, 2009
3GUK	T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--Toluene binding 分子名称: ACETATE ION, CALCIUM ION, CHLORIDE ION, ... 著者 Liu, L, Matthews, B.W. 登録日 2009-03-30 公開日 2009-08-25 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme. Biochemistry, 48, 2009
6D45	L89S Mutant of FeBMb Sperm Whale Myoglobin 分子名称: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE 著者 Bhagi-Damodaran, A, Mirts, E.N, Sandoval, B, Lu, Y. 登録日 2018-04-17 公開日 2018-05-23 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.779 Å) 主引用文献 Heme redox potentials hold the key to reactivity differences between nitric oxide reductase and heme-copper oxidase. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6D8W	Crystal structure of InvbI.18715.a.KN11: Influenza hemagglutinin from strain A/Jiangsu/ALSI/2011 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, FORMIC ACID, Hemagglutinin, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2018-04-27 公開日 2018-05-09 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structural characterisation of hemagglutinin from seven Influenza A H1N1 strains reveal diversity in the C05 antibody recognition site. Sci Rep, 13, 2023
6DS6	Crystal structure of p300 ZZ domain in complex with histone H3 peptide 分子名称: CHLORIDE ION, Histone H3 peptide-Histone acetyltransferase p300 Chimeric protein, ZINC ION 著者 Zhang, Y, Kutateladze, T.G. 登録日 2018-06-13 公開日 2018-08-29 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 The ZZ domain of p300 mediates specificity of the adjacent HAT domain for histone H3. Nat. Struct. Mol. Biol., 25, 2018

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