PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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6PPH	Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-binding structure 分子名称: Capsid vertex component 1, Capsid vertex component 2, Large tegument protein deneddylase, ... 著者 Gong, D, Dai, X, Jih, J, Liu, Y.T, Bi, G.Q, Sun, R, Zhou, Z.H. 登録日 2019-07-06 公開日 2019-09-11 最終更新日 2019-11-27 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 DNA-Packing Portal and Capsid-Associated Tegument Complexes in the Tumor Herpesvirus KSHV. Cell, 178, 2019
6PPD	Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-absent structure 分子名称: Major capsid protein, Small capsomere-interacting protein, Triplex capsid protein 1, ... 著者 Gong, D, Dai, X, Jih, J, Liu, Y.T, Bi, G.Q, Sun, R, Zhou, Z.H. 登録日 2019-07-06 公開日 2019-09-11 最終更新日 2019-11-27 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 DNA-Packing Portal and Capsid-Associated Tegument Complexes in the Tumor Herpesvirus KSHV. Cell, 178, 2019
8G8H	Crystal structure of human DNA polymerase eta incorporating ITP across dC 分子名称: CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*GP*AP*G)-3'), DNA (5'-D(P*AP*TP*CP*CP*TP*CP*AP*CP*GP*CP*T)-3'), ... 著者 Jung, H. 登録日 2023-02-17 公開日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.64 Å) 主引用文献 Crystal structure of human DNA polymerase eta incorporating ITP across dC To Be Published
1A5T	CRYSTAL STRUCTURE OF THE DELTA PRIME SUBUNIT OF THE CLAMP-LOADER COMPLEX OF ESCHERICHIA COLI DNA POLYMERASE III 分子名称: DELTA PRIME, ZINC ION 著者 Guenther, B, Onrust, R, Sali, A, O'Donnell, M, Kuriyan, J. 登録日 1998-02-18 公開日 1998-05-27 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of the delta' subunit of the clamp-loader complex of E. coli DNA polymerase III. Cell(Cambridge,Mass.), 91, 1997
1LAE	Solution Structure of the DNA 13-mer Hairpin CGCGGTXTCCGCG (X=PdG) Containing the 1,N2-propanodeoxyguanosine Adduct at the Seventh Position 分子名称: 5'-D(*CP*GP*CP*GP*GP*TP*(P)P*TP*CP*CP*GP*CP*G)-3' 著者 Weisenseel, J.P, Reddy, G.R, Marnett, L.J, Stone, M.P. 登録日 2002-03-28 公開日 2002-04-17 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of the 1,N(2)-propanodeoxyguanosine adduct in a three-base DNA hairpin loop derived from a palindrome in the Salmonella typhimurium hisD3052 gene. Chem.Res.Toxicol., 15, 2002
1G4Q	RNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTG 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', ... 著者 Han, G.W. 登録日 2000-10-27 公開日 2003-07-08 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.15 Å) 主引用文献 Direct-methods determination of an RNA/DNA hybrid decamer at 1.15 A resolution. Acta Crystallogr.,Sect.D, 57, 2001
3N0U	Crystal structure of Tm1821, the 8-oxoguanine DNA glycosylase of Thermotoga maritima 分子名称: Probable N-glycosylase/DNA lyase, SODIUM ION 著者 Cooper, D.R, Roy, A, Derewenda, Z.S, Integrated Center for Structure and Function Innovation (ISFI) 登録日 2010-05-14 公開日 2011-04-06 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Crystal structure of Tm1821, the 8-oxoguanine DNA glycosylase of Thermotoga maritima To be Published
6W35	A new Autotaxin Inhibitor for the Treatment of Idiopathic Pulmonary Fibrosis: A Clinical Candidate Discovered Using DNA-Encoded Chemistry 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-fluoranyl-~{N}-[(2~{R})-1-[1-(2~{H}-indazol-5-yl)-3-methyl-2,4-bis(oxidanylidene)-1,3,8-triazaspiro[4.5]decan-8-yl]-3-methyl-1-oxidanylidene-butan-2-yl]-5-(trifluoromethyl)benzamide, CALCIUM ION, ... 著者 Cuozzo, J.W. 登録日 2020-03-09 公開日 2020-07-08 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.98 Å) 主引用文献 Novel Autotaxin Inhibitor for the Treatment of Idiopathic Pulmonary Fibrosis: A Clinical Candidate Discovered Using DNA-Encoded Chemistry. J.Med.Chem., 63, 2020
8GKR	Crystal structure of human DNA polymerase eta incorporating 5F-dUTP across dA 分子名称: 2'-deoxy-5-fluorouridine 5'-(tetrahydrogen triphosphate), CALCIUM ION, DNA (5'-D(*AP*GP*TP*GP*TP*GP*AP*G)-3'), ... 著者 Jung, H. 登録日 2023-03-20 公開日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.784 Å) 主引用文献 Crystal structure of human DNA polymerase eta incorporating 5F-dUTP across dA To Be Published
6WCD	Crystal Structure of Xenopus laevis APE2 Catalytic Domain 分子名称: 1,2-ETHANEDIOL, 1,4-BUTANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ... 著者 Wojtaszek, J.L, Wallace, B.D, Williams, R.S. 登録日 2020-03-30 公開日 2020-05-06 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 Endogenous DNA 3' Blocks Are Vulnerabilities for BRCA1 and BRCA2 Deficiency and Are Reversed by the APE2 Nuclease. Mol.Cell, 78, 2020
1LA8	Solution structure of the DNA hairpin 13-mer CGCGGTGTCCGCG 分子名称: 5'-D(*CP*GP*CP*GP*GP*TP*GP*TP*CP*CP*GP*CP*G)-3' 著者 Weisenseel, J.P, Reddy, G.R, Marnett, L.J, Stone, M.P. 登録日 2002-03-28 公開日 2002-04-17 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of the 1,N(2)-propanodeoxyguanosine adduct in a three-base DNA hairpin loop derived from a palindrome in the Salmonella typhimurium hisD3052 gene. Chem.Res.Toxicol., 15, 2002
1CX5	ANTISENSE DNA/RNA HYBRID CONTAINING MODIFIED BACKBONE 分子名称: 5'-D(*CP*GP*CP*GP*TP*T*(MMT)P*TP*GP*CP*GP*C), 5'-R(*GP*CP*GP*CP*AP*AP*AP*AP*CP*GP*CP*G) 著者 Yang, X, Han, X, Cross, C, Sanghvi, Y, Gao, X. 登録日 1999-08-28 公開日 1999-09-14 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 NMR structure of an antisense DNA.RNA hybrid duplex containing a 3'-CH(2)N(CH(3))-O-5' or an MMI backbone linker. Biochemistry, 38, 1999
1G00	ALTERNATION OF DNA AND SOLVENT LAYERS IN THE A FORM OF D(GGCGCC) OBTAINED BY ETHANOL CRYSTALLIZATION 分子名称: 5'-D(*GP*GP*CP*GP*CP*C)-3' 著者 Urpi, L, Navaza, J, Subirana, J.A. 登録日 2000-10-05 公開日 2001-02-05 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Alternation of DNA and solvent layers in the A form of d(GGCGCC) obtained by ethanol crystallization. J.Biomol.Struct.Dyn., 18, 2000
3GNA	Crystal structure of the RAG1 nonamer-binding domain with DNA 分子名称: 5'-D(*AP*CP*TP*TP*AP*AP*CP*AP*AP*AP*AP*AP*CP*C)-3', 5'-D(*TP*GP*GP*TP*TP*TP*TP*TP*GP*TP*TP*AP*AP*G)-3', V(D)J recombination-activating protein 1 著者 Yin, F.F, Bailey, S, Innis, C.A, Steitz, T.A, Schatz, D.G. 登録日 2009-03-16 公開日 2009-04-28 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure of the RAG1 nonamer binding domain with DNA reveals a dimer that mediates DNA synapsis. Nat.Struct.Mol.Biol., 16, 2009
6GSA	Core Centromere Binding Factor 3 (CBF3) with monomeric Ndc10 分子名称: Centromere DNA-binding protein complex CBF3 subunit A, Centromere DNA-binding protein complex CBF3 subunit B, Centromere DNA-binding protein complex CBF3 subunit C, ... 著者 Zhang, W.J, Lukoynova, N, Vaughan, C.K. 登録日 2018-06-13 公開日 2018-08-01 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Insights into Centromere DNA Bending Revealed by the Cryo-EM Structure of the Core Centromere Binding Factor 3 with Ndc10. Cell Rep, 24, 2018
4NIH	Crystal structure of AlkB E136L mutant protein with cofactors bound to dsDNA containing m6A/A 分子名称: 2-OXOGLUTARIC ACID, 5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3', 5'-D(*TP*AP*GP*GP*TP*AP*AP*(6MA)P*AP*CP*CP*GP*T)-3', ... 著者 Yi, C.Q, Zhu, C.X. 登録日 2013-11-06 公開日 2014-04-16 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.374 Å) 主引用文献 Switching Demethylation Activities between AlkB Family RNA/DNA Demethylases through Exchange of Active-Site Residues. Angew.Chem.Int.Ed.Engl., 53, 2014
4NII	Crystal structure of AlkB D135I mutant protein with cofactors bound to dsDNA containing m6A/A 分子名称: 2-OXOGLUTARIC ACID, 5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3', 5'-D(*TP*AP*GP*GP*TP*AP*AP*(6MA)P*AP*CP*CP*GP*T)-3', ... 著者 Yi, C.Q, Zhu, C.X. 登録日 2013-11-06 公開日 2014-04-16 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.622 Å) 主引用文献 Switching Demethylation Activities between AlkB Family RNA/DNA Demethylases through Exchange of Active-Site Residues. Angew.Chem.Int.Ed.Engl., 53, 2014
4NIG	Crystal structure of AlkB D135I/E136H mutant protein with cofactors bound to dsDNA containing m6A/A 分子名称: 2-OXOGLUTARIC ACID, 5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3', 5'-D(*TP*AP*GP*GP*TP*AP*AP*(6MA)P*AP*CP*CP*GP*T)-3', ... 著者 Yi, C.Q, Zhu, C.X. 登録日 2013-11-06 公開日 2014-04-16 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.52 Å) 主引用文献 Switching Demethylation Activities between AlkB Family RNA/DNA Demethylases through Exchange of Active-Site Residues. Angew.Chem.Int.Ed.Engl., 53, 2014
4NID	Crystal structure of AlkB protein with cofactors bound to dsDNA containing m6A 分子名称: 2-OXOGLUTARIC ACID, 5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3', 5'-D(*TP*AP*GP*GP*TP*AP*AP*(6MA)P*AP*CP*CP*GP*T)-3', ... 著者 Zhu, C.X, Yi, C.Q. 登録日 2013-11-06 公開日 2014-04-16 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Switching Demethylation Activities between AlkB Family RNA/DNA Demethylases through Exchange of Active-Site Residues. Angew.Chem.Int.Ed.Engl., 53, 2014
2W7N	Crystal Structure of KorA Bound to Operator DNA: Insight into Repressor Cooperation in RP4 Gene Regulation 分子名称: 5'-D(*AP*AP*TP*GP*TP*TP*TP*AP*GP*CP *TP*AP*AP*AP*CP*AP*AP*G)-3', 5'-D(*CP*BRUP*BRUP*GP*TP*TP*TP*AP*GP*CP*TP*AP *AP*AP*CP*AP*BRUP*T)-3', TRFB TRANSCRIPTIONAL REPRESSOR PROTEIN 著者 Koenig, B, Mueller, J.J, Lanka, E, Heinemann, U. 登録日 2008-12-23 公開日 2009-02-17 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Crystal Structure of Kora Bound to Operator DNA: Insight Into Repressor Cooperation in Rp4 Gene Regulation Nucleic Acids Res., 37, 2009
7KZI	Intermediate state (QQQ) of near full-length DnaK alternatively fused with a substrate peptide 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, Chaperone protein DnaK fused with substrate peptide,Chaperone protein DnaK fused with substrate peptide, ... 著者 Wang, W, Hendrickson, W.A. 登録日 2020-12-10 公開日 2021-05-12 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.82 Å) 主引用文献 Intermediates in allosteric equilibria of DnaK-ATP interactions with substrate peptides Acta Crystallogr.,Sect.D, 77, 2021
1DPU	SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF HUMAN RPA32 COMPLEXED WITH UNG2(73-88) 分子名称: REPLICATION PROTEIN A (RPA32) C-TERMINAL DOMAIN, URACIL DNA GLYCOSYLASE (UNG2) 著者 Mer, G, Edwards, A.M, Chazin, W.J. 登録日 1999-12-27 公開日 2000-11-10 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structural basis for the recognition of DNA repair proteins UNG2, XPA, and RAD52 by replication factor RPA. Cell(Cambridge,Mass.), 103, 2000
2HOT	Phage selected homeodomain bound to modified DNA 分子名称: 3-PROP-2-YN-1-YL-1,3-OXAZOLIDIN-2-ONE, 5'-D(*AP*TP*CP*CP*GP*GP*GP*GP*AP*TP*TP*AP*CP*AP*TP*GP*GP*CP*AP*AP*A)-3', 5'-D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*CP*CP*CP*CP*GP*GP*A)-3', ... 著者 Feldman, M.E, Simon, M.D, Shokat, K.M. 登録日 2006-07-16 公開日 2006-12-12 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.19 Å) 主引用文献 Structure and properties of a re-engineered homeodomain protein-DNA interface. Acs Chem.Biol., 1, 2006
1V1Q	Crystal structure of PriB- a primosomal DNA replication protein of Escherichia coli 分子名称: CYSTEINE, PRIMOSOMAL REPLICATION PROTEIN N 著者 Liu, J.-H, Chang, T.-W, Huang, C.-Y, Chang, M.-C, Chen, S.-U, Wu, H.-N, Hsiao, C.-D. 登録日 2004-04-22 公開日 2004-10-25 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal Structure of Prib- a Primosomal DNA Replication Protein of Escherichia Coli J.Biol.Chem., 279, 2004
2QKB	Human RNase H catalytic domain mutant D210N in complex with 20-mer RNA/DNA hybrid 分子名称: 1,2-ETHANEDIOL, 5'-D(*DGP*DGP*DAP*DAP*DTP*DCP*DAP*DGP*DGP*DTP*DGP*DTP*DCP*DGP*DCP*DAP*DCP*DTP*DCP*DT)-3', 5'-R(*GP*GP*AP*GP*UP*GP*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*CP*C)-3'), ... 著者 Nowotny, M, Gaidamakov, S.A, Ghirlando, R, Cerritelli, S.M, Crouch, R.J, Yang, W. 登録日 2007-07-10 公開日 2007-11-13 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure of Human RNase H1 Complexed with an RNA/DNA Hybrid: Insight into HIV Reverse Transcription Mol.Cell, 28, 2007

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