Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6UPX
DownloadVisualize
BU of 6upx by Molmil
RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 1
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Oh, J, Wang, D.
登録日2019-10-18
公開日2020-06-10
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-pi and CH-pi interactions.
Proc.Natl.Acad.Sci.USA, 117, 2020
6UQ2
DownloadVisualize
BU of 6uq2 by Molmil
RNA polymerase II elongation complex with dG in state 1
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Oh, J, Wang, D.
登録日2019-10-18
公開日2020-06-10
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-pi and CH-pi interactions.
Proc.Natl.Acad.Sci.USA, 117, 2020
6UQ0
DownloadVisualize
BU of 6uq0 by Molmil
RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 4
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Oh, J, Wang, D.
登録日2019-10-18
公開日2020-06-10
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.56 Å)
主引用文献RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-pi and CH-pi interactions.
Proc.Natl.Acad.Sci.USA, 117, 2020
6UQ1
DownloadVisualize
BU of 6uq1 by Molmil
RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 6
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Oh, J, Wang, D.
登録日2019-10-18
公開日2020-06-10
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-pi and CH-pi interactions.
Proc.Natl.Acad.Sci.USA, 117, 2020
6EXV
DownloadVisualize
BU of 6exv by Molmil
Structure of mammalian RNA polymerase II elongation complex inhibited by Alpha-amanitin
分子名称: AMATOXIN, DNA (25-MER), DNA (36-MER), ...
著者Liu, X, Farnung, L, Wigge, C, Cramer, P.
登録日2017-11-09
公開日2018-03-21
最終更新日2019-12-11
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Cryo-EM structure of a mammalian RNA polymerase II elongation complex inhibited by alpha-amanitin.
J. Biol. Chem., 293, 2018
8S5N
DownloadVisualize
BU of 8s5n by Molmil
RNA polymerase II core initially transcribing complex with an ordered RNA of 12 nt
分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ...
著者Zhan, Y, Grabbe, F, Oberbeckmann, E, Dienemann, C, Cramer, P.
登録日2024-02-24
公開日2024-04-10
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Three-step mechanism of promoter escape by RNA polymerase II.
Mol.Cell, 84, 2024
7WBW
DownloadVisualize
BU of 7wbw by Molmil
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3.5) of the nucleosome
分子名称: DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ...
著者Osumi, K, Kujirai, T, Ehara, H, Sekine, S, Takizawa, Y, Kurumizaka, H.
登録日2021-12-17
公開日2023-07-05
実験手法ELECTRON MICROSCOPY (7.1 Å)
主引用文献Structural Basis of Damaged Nucleotide Recognition by Transcribing RNA Polymerase II in the Nucleosome.
J.Mol.Biol., 435, 2023
7WBV
DownloadVisualize
BU of 7wbv by Molmil
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-4) of the nucleosome
分子名称: DNA (159-MER), DNA (198-MER), DNA-directed RNA polymerase subunit, ...
著者Osumi, K, Kujirai, T, Ehara, H, Sekine, S, Takizawa, Y, Kurumizaka, H.
登録日2021-12-17
公開日2023-07-05
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Structural Basis of Damaged Nucleotide Recognition by Transcribing RNA Polymerase II in the Nucleosome.
J.Mol.Biol., 435, 2023
7WBX
DownloadVisualize
BU of 7wbx by Molmil
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3) of the nucleosome
分子名称: DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ...
著者Osumi, K, Kujirai, T, Ehara, H, Sekine, S, Takizawa, Y, Kurumizaka, H.
登録日2021-12-17
公開日2023-07-05
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structural Basis of Damaged Nucleotide Recognition by Transcribing RNA Polymerase II in the Nucleosome.
J.Mol.Biol., 435, 2023
4A93
DownloadVisualize
BU of 4a93 by Molmil
RNA Polymerase II elongation complex containing a CPD Lesion
分子名称: 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*T*TTP*TP*TP*CP*C BRUP*GP*GP*TP*CP*AP*TP*T)-3', 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP)-3', 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP*AP)-3', ...
著者Walmacq, C, Cheung, A.C.M, Kireeva, M.L, Lubkowska, L, Ye, C, Gotte, D, Strathern, J.N, Carell, T, Cramer, P, Kashlev, M.
登録日2011-11-23
公開日2012-03-21
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Mechanism of Translesion Transcription by RNA Polymerase II and its Role in Cellular Resistance to DNA Damage.
Mol.Cell, 46, 2012
6INQ
DownloadVisualize
BU of 6inq by Molmil
RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA (+1 position)
分子名称: DNA (198-MER), DNA (31-MER), DNA-directed RNA polymerase subunit, ...
著者Kujirai, T, Ehara, H, Fujino, Y, Shirouzu, M, Sekine, S, Kurumizaka, H.
登録日2018-10-26
公開日2019-04-03
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (6.9 Å)
主引用文献Structural basis of the nucleosome transition during RNA polymerase II passage.
Science, 362, 2018
8UKR
DownloadVisualize
BU of 8ukr by Molmil
RNA polymerase II elongation complex with Fapy-dG lesion soaking with ATP before chemistry
分子名称: ADENOSINE-5'-TRIPHOSPHATE, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ...
著者Hou, P, Oh, J, Wang, D.
登録日2023-10-15
公開日2024-04-24
実験手法X-RAY DIFFRACTION (3.78 Å)
主引用文献Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG.
J.Am.Chem.Soc., 146, 2024
8UKU
DownloadVisualize
BU of 8uku by Molmil
RNA polymerase II elongation complex with Fapy-dG lesion with CMP added
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Hou, P, Oh, J, Wang, D.
登録日2023-10-15
公開日2024-04-24
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG.
J.Am.Chem.Soc., 146, 2024
8UKT
DownloadVisualize
BU of 8ukt by Molmil
RNA polymerase II elongation complex with Fapy-dG lesion with AMP added
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Hou, P, Oh, J, Wang, D.
登録日2023-10-15
公開日2024-04-24
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG.
J.Am.Chem.Soc., 146, 2024
8UKQ
DownloadVisualize
BU of 8ukq by Molmil
RNA polymerase II elongation complex with Fapy-dG lesion in apo state
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Hou, P, Oh, J, Wang, D.
登録日2023-10-15
公開日2024-04-24
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG.
J.Am.Chem.Soc., 146, 2024
8UKS
DownloadVisualize
BU of 8uks by Molmil
RNA polymerase II elongation complex with Fapy-dG lesion soaking with CTP before chemistry
分子名称: CYTIDINE-5'-TRIPHOSPHATE, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ...
著者Hou, P, Oh, J, Wang, D.
登録日2023-10-15
公開日2024-04-24
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG.
J.Am.Chem.Soc., 146, 2024
3H0G
DownloadVisualize
BU of 3h0g by Molmil
RNA Polymerase II from Schizosaccharomyces pombe
分子名称: DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, ...
著者Spahr, H, Calero, G, Bushnell, D.A, Kornberg, R.D.
登録日2009-04-09
公開日2009-08-25
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3.65 Å)
主引用文献Schizosacharomyces pombe RNA polymerase II at 3.6-A resolution.
Proc.Natl.Acad.Sci.USA, 106, 2009
8S54
DownloadVisualize
BU of 8s54 by Molmil
RNA polymerase II early elongation complex bound to TFIIE and TFIIF - state b (composite structure)
分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ...
著者Zhan, Y, Grabber, F, Oberbeckmann, E, Dienemann, C, Cramer, P.
登録日2024-02-22
公開日2024-04-17
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Three-step mechanism of promoter escape by RNA polymerase II.
Mol.Cell, 84, 2024
8S52
DownloadVisualize
BU of 8s52 by Molmil
RNA polymerase II core initially transcribing complex with an ordered RNA of 10 nt
分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ...
著者Zhan, Y, Grabbe, F, Oberbeckmann, E, Dienemann, C, Cramer, P.
登録日2024-02-22
公開日2024-04-17
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Three-step mechanism of promoter escape by RNA polymerase II.
Mol.Cell, 84, 2024
8S51
DownloadVisualize
BU of 8s51 by Molmil
RNA polymerase II core initially transcribing complex with an ordered RNA of 8 nt
分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ...
著者Zhan, Y, Grabbe, F, Oberbeckmann, E, Dienemann, C, Cramer, P.
登録日2024-02-22
公開日2024-04-17
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Three-step mechanism of promoter escape by RNA polymerase II.
Mol.Cell, 84, 2024
8S55
DownloadVisualize
BU of 8s55 by Molmil
RNA polymerase II early elongation complex bound to TFIIE and TFIIF - state a (composite structure)
分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ...
著者Zhan, Y, Grabbe, F, Oberbeckmann, E, Dienemann, C, Cramer, P.
登録日2024-02-22
公開日2024-04-17
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Three-step mechanism of promoter escape by RNA polymerase II.
Mol.Cell, 84, 2024
3FKI
DownloadVisualize
BU of 3fki by Molmil
12-Subunit RNA Polymerase II Refined with Zn-SAD data
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Meyer, P.A, Ye, P, Suh, M.H, Zhang, M, Fu, J.
登録日2008-12-16
公開日2009-03-10
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3.88 Å)
主引用文献Structure of the 12-Subunit RNA Polymerase II Refined with the Aid of Anomalous Diffraction Data
J.Biol.Chem., 284, 2009
7ML1
DownloadVisualize
BU of 7ml1 by Molmil
RNA polymerase II pre-initiation complex (PIC2)
分子名称: BJ4_G0050160.mRNA.1.CDS.1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ...
著者Yang, C, Fujiwara, R, Kim, H.J, Gorbea Colon, J.J, Steimle, S, Garcia, B.A, Murakami, K.
登録日2021-04-27
公開日2022-02-02
最終更新日2022-02-16
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II.
Mol.Cell, 82, 2022
7ML2
DownloadVisualize
BU of 7ml2 by Molmil
RNA polymerase II pre-initiation complex (PIC3)
分子名称: BJ4_G0004860.mRNA.1.CDS.1, BJ4_G0050160.mRNA.1.CDS.1, DNA-directed RNA polymerase II subunit RPB11, ...
著者Yang, C, Fujiwara, R, Kim, H.J, Gorbea Colon, J.J, Steimle, S, Garcia, B.A, Murakami, K.
登録日2021-04-27
公開日2022-02-02
最終更新日2022-02-16
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II.
Mol.Cell, 82, 2022
7ML4
DownloadVisualize
BU of 7ml4 by Molmil
RNA polymerase II initially transcribing complex (ITC)
分子名称: BJ4_G0050160.mRNA.1.CDS.1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ...
著者Yang, C, Fujiwara, R, Kim, H.J, Gorbea Colon, J.J, Steimle, S, Garcia, B.A, Murakami, K.
登録日2021-04-27
公開日2022-02-02
最終更新日2022-03-09
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II.
Mol.Cell, 82, 2022

221051

件を2024-06-12に公開中

PDB statisticsPDBj update infoContact PDBjnumon