PDB: 37932 件ウェブページステータス検索Chemie searchBIRD

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1IT7	Crystal structure of archaeosine tRNA-guanine transglycosylase complexed with guanine 分子名称: Archaeosine tRNA-guanine transglycosylase, GUANINE, MAGNESIUM ION, ... 著者 Ishitani, R, Nureki, O, Fukai, S, Kijimoto, T, Nameki, N, Watanabe, M, Kondo, H, Sekine, M, Okada, N, Nishimura, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2002-01-11 公開日 2002-05-22 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of archaeosine tRNA-guanine transglycosylase. J.Mol.Biol., 318, 2002
2AYU	The structure of nucleosome assembly protein suggests a mechanism for histone binding and shuttling 分子名称: Nucleosome assembly protein 著者 Park, Y.J, Luger, K. 登録日 2005-09-08 公開日 2006-02-07 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The structure of nucleosome assembly protein 1. Proc.Natl.Acad.Sci.Usa, 103, 2006
5X00	Nucleoside Diphosphate Kinase from Vibrio cholerae is a Thermolabile Type II tetramer 分子名称: Nucleoside diphosphate kinase 著者 Agnihotri, P, Mishra, A.K, Pratap, J.V. 登録日 2017-01-19 公開日 2018-01-31 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.06 Å) 主引用文献 Nucleoside Diphosphate Kinase from Vibrio cholerae is a Thermolabile Type II tetramer. To Be Published
3HFD	Nucleosome Assembly Protein 1 from Plasmodium knowlesi 分子名称: Nucleosome assembly protein 1 著者 Arakaki, T, Merritt, E.A, Medical Structural Genomics of Pathogenic Protozoa (MSGPP) 登録日 2009-05-11 公開日 2009-05-26 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Nucleosome Assembly Protein 1 from Plasmodium knowlesi To be Published
2ZUA	Crystal structure of nucleoside diphosphate kinase from Haloarcula quadrata 分子名称: Nucleoside diphosphate kinase 著者 Ichimura, T, Yamamura, A, Ohtsuka, J, Miyazono, K, Okai, M, Nagata, K, Tanokura, M. 登録日 2008-10-15 公開日 2009-08-25 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.59 Å) 主引用文献 Molecular mechanism of distinct salt-dependent enzyme activity of two halophilic nucleoside diphosphate kinases Biophys.J., 96, 2009
8PQQ	Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 E88Q Mutant bound to Clofarabine 分子名称: 2-CHLORO-9-(2-DEOXY-2-FLUORO-B -D-ARABINOFURANOSYL)-9H-PURIN-6-AMINE, MAGNESIUM ION, Nucleoside 2-deoxyribosyltransferase 著者 Tang, P, Harding, C.J, Czekster, M.C. 登録日 2023-07-11 公開日 2024-02-21 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.23 Å) 主引用文献 Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase. Acs Catalysis, 14, 2024
8PQR	Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 WT bound to DAD_Immucillin-H 分子名称: 7-[[(3R,4R)-3-(hydroxymethyl)-4-oxidanyl-pyrrolidin-1-ium-1-yl]methyl]-3,5-dihydropyrrolo[3,2-d]pyrimidin-4-one, Nucleoside 2-deoxyribosyltransferase 著者 Tang, P, Harding, C.J, Czekster, C.M. 登録日 2023-07-11 公開日 2024-02-21 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.586 Å) 主引用文献 Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase. Acs Catalysis, 14, 2024
8PQT	Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 WT bound to Bis-Tris 分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Nucleoside 2-deoxyribosyltransferase 著者 Tang, P, Harding, C.J, Czekster, C.M. 登録日 2023-07-11 公開日 2024-02-21 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase. Acs Catalysis, 14, 2024
8PQP	Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 D62N Mutant bound to ImmH-Forodesine 分子名称: 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL, Nucleoside 2-deoxyribosyltransferase 著者 Tang, P, Harding, C.J, Czekster, M.C. 登録日 2023-07-11 公開日 2024-02-21 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.709 Å) 主引用文献 Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase. Acs Catalysis, 14, 2024
8RH3	Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 WT bound to Gemcitabine 分子名称: (2~{R},3~{R})-4,4-bis(fluoranyl)-2-(hydroxymethyl)oxolan-3-ol, Nucleoside 2-deoxyribosyltransferase 著者 Tang, P, Harding, C.J, Czekster, C.M. 登録日 2023-12-14 公開日 2024-02-21 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase. Acs Catalysis, 14, 2024
5OLN	X-Ray Structure of the Complex Pyrimidine-nucleoside phosphorylase from Bacillus subtilis at 1.88 A 分子名称: 1,2-ETHANEDIOL, IMIDAZOLE, Pyrimidine-nucleoside phosphorylase, ... 著者 Balaev, V.V, Prokofev, I.I, Gabdoulkhakov, A.G, Betzel, C, Lashkov, A.A. 登録日 2017-07-28 公開日 2018-04-18 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 Crystal structure of pyrimidine-nucleoside phosphorylase from Bacillus subtilis in complex with imidazole and sulfate. Acta Crystallogr F Struct Biol Commun, 74, 2018
2OXT	Crystal structure of Meaban virus nucleoside-2'-O-methyltransferase 分子名称: NUCLEOSIDE-2'-O-METHYLTRANSFERASE, S-ADENOSYLMETHIONINE 著者 Mastrangelo, E, Milani, M, Bollati, M, Bolognesi, M. 登録日 2007-02-21 公開日 2007-05-15 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structural bases for substrate recognition and activity in Meaban virus nucleoside-2'-O-methyltransferase Protein Sci., 16, 2007
1V48	Calf spleen purine nucleoside phosphorylase (PNP) binary complex with 9-(5,5-difluoro-5-phosphonopenthyl)guanine 分子名称: 9-(5,5-DIFLUORO-5-PHOSPHONOPENTYL)GUANINE, MAGNESIUM ION, Purine nucleoside phosphorylase, ... 著者 Luic, M, Koellner, G, Yokomatsu, T, Shibuya, S, Bzowska, A. 登録日 2003-11-11 公開日 2004-08-03 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Calf spleen purine-nucleoside phosphorylase: crystal structure of the binary complex with a potent multisubstrate analogue inhibitor. Acta Crystallogr.,Sect.D, 60, 2004
2MAS	PURINE NUCLEOSIDE HYDROLASE WITH A TRANSITION STATE INHIBITOR 分子名称: 2-(4-AMINO-PHENYL)-5-HYDROXYMETHYL-PYRROLIDINE-3,4-DIOL, CALCIUM ION, INOSINE-URIDINE NUCLEOSIDE N-RIBOHYDROLASE 著者 Degano, M, Schramm, V.L, Sacchettini, J.C. 登録日 1996-10-17 公開日 1997-08-12 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Trypanosomal nucleoside hydrolase. A novel mechanism from the structure with a transition-state inhibitor. Biochemistry, 37, 1998
4DZ6	Transition state mimic of nucleoside-diphosphate kinase from borrelia burgdorferi with bound vanadate and adp 分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, Nucleoside diphosphate kinase, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2012-02-29 公開日 2012-03-14 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure and analysis of nucleoside diphosphate kinase from Borrelia burgdorferi prepared in a transition-state complex with ADP and vanadate moieties. Acta Crystallogr F Struct Biol Commun, 74, 2018
6RYR	Nucleosome-CHD4 complex structure (single CHD4 copy) 分子名称: Chromodomain-helicase-DNA-binding protein 4,Chromodomain-helicase-DNA-binding protein 4,Chromodomain-helicase-DNA-binding protein 4, DNA (149-MER), Histone H2A type 1, ... 著者 Farnung, L, Ochmann, M, Cramer, P. 登録日 2019-06-11 公開日 2020-07-15 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Nucleosome-CHD4 chromatin remodeller structure maps human disease mutations. Elife, 9, 2020
6RYU	Nucleosome-CHD4 complex structure (two CHD4 copies) 分子名称: Chromodomain-helicase-DNA-binding protein 4,CHD4,Chromodomain-helicase-DNA-binding protein 4, DNA (149-MER), Histone H2A type 1, ... 著者 Farnung, L, Ochmann, M, Cramer, P. 登録日 2019-06-12 公開日 2020-07-15 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Nucleosome-CHD4 chromatin remodeller structure maps human disease mutations. Elife, 9, 2020
5XF5	Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (R,S-configuration) 分子名称: (1S,2R)-1,2-diphenylethane-1,2-diamine, DNA (145-MER), Histone H2A type 1-B/E, ... 著者 Ma, Z, Adhireksan, Z, Murray, B.S, Dyson, P.J, Davey, C.A. 登録日 2017-04-07 公開日 2017-10-11 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.82 Å) 主引用文献 Nucleosome acidic patch-targeting binuclear ruthenium compounds induce aberrant chromatin condensation Nat Commun, 8, 2017
2VP0	Structural Studies of Nucleoside Analog and Feedback Inhibitor Binding to Drosophila Melanogaster Multisubstrate Deoxyribonucleoside Kinase 分子名称: DEOXYNUCLEOSIDE KINASE, MAGNESIUM ION, THYMIDINE-5'-TRIPHOSPHATE 著者 Mikkelsen, N.E, Munch-Petersen, B, Eklund, H. 登録日 2008-02-26 公開日 2008-04-29 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural Studies of Nucleoside Analog and Feedback Inhibitor Binding to Drosophila Melanogaster Multisubstrate Deoxyribonucleoside Kinase. FEBS J., 275, 2008
5XF4	Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (S,S-configuration) 分子名称: (1S,2S)-1,2-diphenylethane-1,2-diamine, DNA (145-MER), Histone H2A type 1-B/E, ... 著者 Ma, Z, Adhireksan, Z, Murray, B.S, Dyson, P.J, Davey, C.A. 登録日 2017-04-07 公開日 2017-10-11 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.87 Å) 主引用文献 Nucleosome acidic patch-targeting binuclear ruthenium compounds induce aberrant chromatin condensation Nat Commun, 8, 2017
5XF3	Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (R,R-configuration) 分子名称: (1R,2R)-1,2-diphenylethane-1,2-diamine, DNA (145-MER), Histone H2A type 1-B/E, ... 著者 Ma, Z, Adhireksan, Z, Murray, B.S, Dyson, P.J, Davey, C.A. 登録日 2017-04-07 公開日 2017-10-11 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Nucleosome acidic patch-targeting binuclear ruthenium compounds induce aberrant chromatin condensation Nat Commun, 8, 2017
1J90	Crystal Structure of Drosophila Deoxyribonucleoside Kinase 分子名称: 2'-DEOXYCYTIDINE, Deoxyribonucleoside kinase, SULFATE ION 著者 Johansson, K, Ramaswamy, S, Ljungkrantz, C, Knecht, W, Piskur, J, Munch-Petersen, B, Eriksson, S, Eklund, H. 登録日 2001-05-23 公開日 2001-11-28 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.56 Å) 主引用文献 Structural basis for substrate specificities of cellular deoxyribonucleoside kinases. Nat.Struct.Biol., 8, 2001
5XF6	Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having an ethylenediamine linker 分子名称: DNA (145-MER), ETHANE-1,2-DIAMINE, Histone H2A, ... 著者 Ma, Z, Adhireksan, Z, Murray, B.S, Dyson, P.J, Davey, C.A. 登録日 2017-04-07 公開日 2017-10-11 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.63 Å) 主引用文献 Nucleosome acidic patch-targeting binuclear ruthenium compounds induce aberrant chromatin condensation Nat Commun, 8, 2017
4A5B	Crystal structure of the C258S/C268S variant of Toxoplasma gondii nucleoside triphosphate diphosphohydrolase 1 (NTPDase1) 分子名称: NUCLEOSIDE-TRIPHOSPHATASE 2 著者 Krug, U, Zebisch, M, Strater, N. 登録日 2011-10-24 公開日 2011-11-30 最終更新日 2013-12-25 実験手法 X-RAY DIFFRACTION (2.48 Å) 主引用文献 Structural Insight Into Activation Mechanism of Toxoplasma Gondii Nucleoside Triphosphate Diphosphohydrolases by Disulfide Reduction. J.Biol.Chem., 287, 2012
1IT8	Crystal structure of archaeosine tRNA-guanine transglycosylase from Pyrococcus horikoshii complexed with archaeosine precursor, preQ0 分子名称: 2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDINE-5-CARBONITRILE, MAGNESIUM ION, ZINC ION, ... 著者 Ishitani, R, Nureki, O, Fukai, S, Kijimoto, T, Nameki, N, Watanabe, M, Kondo, H, Sekine, M, Okada, N, Nishimura, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2002-01-11 公開日 2002-05-22 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of archaeosine tRNA-guanine transglycosylase. J.Mol.Biol., 318, 2002

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