PDB: 68717 件ウェブページステータス検索Chemie searchBIRD

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2ARD	The structure of tryptophan 7-halogenase (PrnA) suggests a mechanism for regioselective chlorination 分子名称: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, tryptophan halogenase PrnA 著者 Dong, C, Flecks, S, Unversucht, S, Haupt, C, Van Pee, K.H, Naismith, J.H, Scottish Structural Proteomics Facility (SSPF) 登録日 2005-08-19 公開日 2005-10-04 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Tryptophan 7-halogenase (PrnA) structure suggests a mechanism for regioselective chlorination. Science, 309, 2005
3WEW	Crystal structure of HtdX (Rv0241c) of Mycobacterium tuberculosis at 2.4 A resolution 分子名称: HtdX dehydratase, MAGNESIUM ION 著者 Biswas, R, Dutta, D, Das, A.K. 登録日 2013-07-16 公開日 2014-07-16 最終更新日 2025-06-25 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structure and molecular dynamics simulation of Mycobacterium tuberculosis MaoC-like dehydratase HtdX provide insights into substrate binding and membrane interactions. Biochim Biophys Acta Proteins Proteom, 1873, 2025
2D0S	Crystal structure of the Cytochrome C552 from moderate thermophilic bacterium, hydrogenophilus thermoluteolus 分子名称: HEME C, cytochrome c 著者 Nakamura, S, Ichiki, S.I, Takashima, H, Uchiyama, S, Hasegawa, J, Kobayashi, Y, Sambongi, Y, Ohkubo, T. 登録日 2005-08-08 公開日 2006-05-23 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure of Cytochrome c552 from a Moderate Thermophilic Bacterium, Hydrogenophilus thermoluteolus: Comparative Study on the Thermostability of Cytochrome c Biochemistry, 45, 2006
2CZ3	Crystal structure of glutathione transferase zeta 1-1 (maleylacetoacetate isomerase) from Mus musculus (form-2 crystal) 分子名称: Maleylacetoacetate isomerase 著者 Mizohata, E, Morita, S, Kinoshita, Y, Nagano, K, Uda, H, Uchikubo, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2005-07-10 公開日 2006-01-10 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of glutathione transferase zeta 1-1 (maleylacetoacetate isomerase) from Mus musculus (form-2 crystal) To be Published
2HLY	The crystal structure of genomics APC5867 分子名称: Hypothetical protein Atu2299 著者 Dong, A, Xu, X, Zheng, H, Kim, Y, Edwards, A.M, Joachimiak, A, Savchenko, A, Midwest Center for Structural Genomics (MCSG) 登録日 2006-07-10 公開日 2006-07-18 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 The crystal structure of genomics APC5867 TO BE PUBLISHED
5XRF	Crystal structure of Da-36, a thrombin-like enzyme from Deinagkistrodon acutus 分子名称: DI(HYDROXYETHYL)ETHER, Snake venom serine protease Da-36, alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Lin, C.-C, Wu, W.-G, Fan, Q, Tian, J, Zhang, Z, Zheng, Y. 登録日 2017-06-08 公開日 2018-06-13 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of Da-36, a thrombin-like enzyme from Deinagkistrodon acutus To Be Published
5X3M	crystal structure of p-Ub-S65-NH2 分子名称: D-ubiquitin, Polyubiquitin-B 著者 Man, P, Shuai, G, Qian, Q, Lei, L. 登録日 2017-02-06 公開日 2017-04-05 最終更新日 2022-02-09 実験手法 X-RAY DIFFRACTION (1.818 Å) 主引用文献 Structure of p-Ub-S65-NH2 at 1.82 Angstroms resolution To Be Published
4PNU	E. coli sliding clamp in complex with (R)-6-bromo-9-(2-((R)-1-carboxy-2-phenylethylamino)-2-oxoethyl)-2,3,4,9-tetrahydro-1H-carbazole-2-carboxylic acid 分子名称: (2R)-6-bromo-9-(2-{[(1R)-1-carboxy-2-phenylethyl]amino}-2-oxoethyl)-2,3,4,9-tetrahydro-1H-carbazole-2-carboxylic acid, CALCIUM ION, CHLORIDE ION, ... 著者 Yin, Z, Oakley, A.J. 登録日 2014-02-21 公開日 2014-03-05 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Bacterial Sliding Clamp Inhibitors that Mimic the Sequential Binding Mechanism of Endogenous Linear Motifs. J.Med.Chem., 58, 2015
4PO1	Mycobacterium tuberculosis RecA glycerol bound room temperature structure IIC-RT 分子名称: GLYCEROL, Protein RecA 著者 Chandran, A.V, Prabu, J.R, Patil, N.K, Muniyappa, K, Vijayan, M. 登録日 2014-02-23 公開日 2015-03-18 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Structural studies on Mycobacterium tuberculosis RecA: Molecular plasticity and interspecies variability J.Biosci., 40, 2015
5XPX	Structure elucidation of truncated AMS3 lipase from an Antarctic Pseudomonas 分子名称: CALCIUM ION, Lipase, ZINC ION 著者 Rahman, R.N.Z.R.A, Latip, W. 登録日 2017-06-05 公開日 2018-06-20 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.77 Å) 主引用文献 Structure elucidation of truncated AMS3 lipase from an Antarctic Pseudomonas To Be Published
5XC6	Dengue Virus 4 NS3 Helicase in complex with SSRNA SLA12 分子名称: NS3 Helicase, PHOSPHATE ION, RNA (5'-R(*AP*GP*UP*UP*GP*UP*UP*AP*GP*UP*CP*U)-3') 著者 Swarbrick, C.M.D, Basavannacharya, C, Chan, K.W.K, Chan, S.A, Singh, D, Wei, N, Phoo, W.W, Luo, D, Lescar, J, Vasudevan, S.G. 登録日 2017-03-22 公開日 2017-11-08 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 NS3 helicase from dengue virus specifically recognizes viral RNA sequence to ensure optimal replication Nucleic Acids Res., 45, 2017
4PM0	PDE7A catalytic domain in complex with 2-(Cyclopentylamino)thieno[3,2-d]pyrimidin-4(3H)-one derivative 分子名称: 2-(cyclopentylamino)-3-ethyl-7-ethynylthieno[3,2-d]pyrimidin-4(3H)-one, High affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A, MAGNESIUM ION, ... 著者 Kawai, K, Endo, Y, Asano, T, Amano, S, Sawada, K, Ueo, N, Takahashi, N, Sonoda, Y, Kamei, N, Nagata, N. 登録日 2014-05-20 公開日 2014-12-03 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Discovery of 2-(Cyclopentylamino)thieno[3,2-d]pyrimidin-4(3H)-one Derivatives as a New Series of Potent Phosphodiesterase 7 Inhibitors. J.Med.Chem., 57, 2014
4MGV	Crystal structure of FK506 binding domain of plasmodium VIVAX FKBP35 In complex with inhibitor D5 分子名称: 70 kDa peptidylprolyl isomerase, putative, N'-(1-adamantylcarbonyl)pyridine-4-carbohydrazide 著者 Rajan, S, Harikishore, A, Yoon, H.S. 登録日 2013-08-29 公開日 2013-12-04 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.72 Å) 主引用文献 Adamantyl derivative as a potent inhibitor of Plasmodium FK506 binding protein 35. Acs Med.Chem.Lett., 4, 2013
7RNS	nSH2 domain of p85-alpha subunit of phosphatidylinositol 3-kinase in complex with an actin peptide with phosphorylated tyrosine 53 分子名称: 1,2-ETHANEDIOL, Actin, alpha skeletal muscle, ... 著者 Dai, S, Horton, J.R, Cheng, X. 登録日 2021-07-29 公開日 2021-08-11 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (1.14 Å) 主引用文献 The Functional Analysis of a Major Tyrosine Phosphorylation Site on Actin To Be Published
6P1T	Pre-catalytic ternary complex of human DNA Polymerase Mu with 1-nt gapped substrate containing template 8OG and bound CMPCPP 分子名称: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, ... 著者 Kaminski, A.M, Pedersen, L.C, Bebenek, K, Chiruvella, K.K, Ramsden, D.A, Kunkel, T.A. 登録日 2019-05-20 公開日 2019-09-04 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Unexpected behavior of DNA polymerase Mu opposite template 8-oxo-7,8-dihydro-2'-guanosine. Nucleic Acids Res., 47, 2019
8ULE	The structure of NanH in complex with Neu5,9Ac 分子名称: 1,2-ETHANEDIOL, 9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid, Sialidase 著者 Medley, B.J, Boraston, A.B. 登録日 2023-10-16 公開日 2024-09-04 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (1.89 Å) 主引用文献 A "terminal" case of glycan catabolism: Structural and enzymatic characterization of the sialidases of Clostridium perfringens. J.Biol.Chem., 300, 2024
7RNV	SH2 domain of guanine nucleotide exchange factor Vav2 in complex with an actin peptide with phosphorylated tyrosine 53 分子名称: 1,2-ETHANEDIOL, Actin, alpha skeletal muscle, ... 著者 Dai, S, Horton, J.R, Cheng, X. 登録日 2021-07-29 公開日 2021-08-11 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 The Functional Analysis of a Major Tyrosine Phosphorylation Site on Actin To Be Published
6PAE	Dickeya chrysanthemi complex with L-Asp at pH 5.6 分子名称: 1,2-ETHANEDIOL, ASPARTIC ACID, GLYCEROL, ... 著者 Lubkowski, J, Wlodawer, A. 登録日 2019-06-11 公開日 2019-09-04 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Geometric considerations support the double-displacement catalytic mechanism of l-asparaginase. Protein Sci., 28, 2019
6P1W	Pre-catalytic ternary complex of human DNA Polymerase Mu with 1-nt gapped substrate containing undamaged template dG and bound incoming CMPCPP 分子名称: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, ... 著者 Kaminski, A.M, Pedersen, L.C, Bebenek, K, Chiruvella, K.K, Ramsden, D.A, Kunkel, T.A. 登録日 2019-05-20 公開日 2019-09-04 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.751 Å) 主引用文献 Unexpected behavior of DNA polymerase Mu opposite template 8-oxo-7,8-dihydro-2'-guanosine. Nucleic Acids Res., 47, 2019
7S4B	Room temperature X-ray structure of SARS-CoV-2 main protease in complex with compound Z1530724963 分子名称: (2R)-2-(3-fluorophenyl)-N-(isoquinolin-4-yl)propanamide, 3C-like proteinase 著者 Kovalevsky, A, Kneller, D.W, Coates, L. 登録日 2021-09-08 公開日 2021-09-15 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Hit Expansion of a Noncovalent SARS-CoV-2 Main Protease Inhibitor. Acs Pharmacol Transl Sci, 5, 2022
4LZ7	Crystal structures of GLuR2 ligand-binding-domain in complex with glutamate and positive allosteric modulators 分子名称: GLUTAMIC ACID, Glutamate receptor 2, N-({(5S)-3-[3-fluoro-4-(pyrrolidin-1-yl)phenyl]-4,5-dihydro-1,2-oxazol-5-yl}methyl)acetamide, ... 著者 Pandit, J. 登録日 2013-07-31 公開日 2013-12-04 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Discovery and Characterization of a Novel Dihydroisoxazole Class of alpha-Amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) Receptor Potentiators. J.Med.Chem., 56, 2013
7S3S	Room temperature X-ray structure of SARS-CoV-2 main protease in complex with compound Z1530724813 分子名称: 2-(3-chlorophenyl)-N-(isoquinolin-4-yl)acetamide, 3C-like proteinase 著者 Kovalevsky, A, Kneller, D.W, Coates, L. 登録日 2021-09-08 公開日 2021-09-15 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Hit Expansion of a Noncovalent SARS-CoV-2 Main Protease Inhibitor. Acs Pharmacol Transl Sci, 5, 2022
7S3K	Room temperature X-ray structure of SARS-CoV-2 main protease in complex with compound Z1530718726 分子名称: 2-(5-chloro-2-methoxyphenyl)-N-(isoquinolin-4-yl)acetamide, 3C-like proteinase 著者 Kovalevsky, A, Kneller, D.W, Coates, L. 登録日 2021-09-07 公開日 2021-09-15 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Hit Expansion of a Noncovalent SARS-CoV-2 Main Protease Inhibitor. Acs Pharmacol Transl Sci, 5, 2022
5XC7	Dengue Virus 4 NS3 Helicase D290A mutant 分子名称: CHLORIDE ION, GLYCEROL, NS3 Helicase 著者 Swarbrick, C.M.D, Basavannacharya, C, Chan, K.W.K, Chan, S.A, Singh, D, Wei, N, Phoo, W.W, Luo, D, Lescar, J, Vasudevan, S.G. 登録日 2017-03-22 公開日 2017-11-08 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 NS3 helicase from dengue virus specifically recognizes viral RNA sequence to ensure optimal replication Nucleic Acids Res., 45, 2017
5XLF	Crystal structure of aerobically purified and aerobically crystallized D. vulgaris Miyazaki F [NiFe]-hydrogenase 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ... 著者 Nishikawa, K, Mochida, S, Hiromoto, T, Shibata, N, Higuchi, Y. 登録日 2017-05-10 公開日 2018-06-06 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (1.71 Å) 主引用文献 Ni-elimination from the active site of the standard [NiFe]‐hydrogenase upon oxidation by O2. J. Inorg. Biochem., 177, 2017

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