PDB: 45331 件ウェブページステータス検索Chemie searchBIRD

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6V64	Crystal structure of human thrombin bound to ppack with tryptophans replaced by 5-F-tryptophan 分子名称: D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, SODIUM ION, Thrombin heavy chain, ... 著者 Ruben, E.A, Chen, Z, Di Cera, E. 登録日 2019-12-04 公開日 2020-05-13 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 19F NMR reveals the conformational properties of free thrombin and its zymogen precursor prethrombin-2. J.Biol.Chem., 295, 2020
3TVB	A Highly Symmetric DNA G-4 Quadruplex/drug Complex 分子名称: DAUNOMYCIN, DNA (5'-D(*GP*GP*GP*G)-3'), MAGNESIUM ION, ... 著者 Clark, G.R, Pytel, P.D, Squire, C.J. 登録日 2011-09-19 公開日 2012-03-14 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.08 Å) 主引用文献 The high-resolution crystal structure of a parallel intermolecular DNA G-4 quadruplex/drug complex employing syn glycosyl linkages. Nucleic Acids Res., 40, 2012
3I3D	E. COLI (lacZ) BETA-GALACTOSIDASE (M542A) IN COMPLEX WITH IPTG 分子名称: 1-methylethyl 1-thio-beta-D-galactopyranoside, Beta-galactosidase, DIMETHYL SULFOXIDE, ... 著者 Dugdale, M.L, Dymianiw, D, Minhas, B, Huber, R.E. 登録日 2009-06-30 公開日 2010-05-12 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Role of Met-542 as a guide for the conformational changes of Phe-601 that occur during the reaction of β-galactosidase (Escherichia coli). Biochem.Cell Biol., 88, 2010
3GDG	Crystal structure of the NADP-dependent mannitol dehydrogenase from Cladosporium herbarum. 分子名称: Probable NADP-dependent mannitol dehydrogenase, SODIUM ION 著者 Nuess, D, Goettig, P, Magler, I, Denk, U, Breitenbach, M, Schneider, P.B, Brandstetter, H, Simon-Nobbe, B. 登録日 2009-02-24 公開日 2010-06-09 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of the NADP-dependent mannitol dehydrogenase from Cladosporium herbarum: Implications for oligomerisation and catalysis. Biochimie, 92, 2010
4X88	E178D Selectivity filter mutant of NavMS voltage-gated pore 分子名称: HEGA-10, Ion transport protein, PENTAETHYLENE GLYCOL, ... 著者 Naylor, C.E, Bagneris, C, Wallace, B.A. 登録日 2014-12-10 公開日 2016-02-24 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Molecular basis of ion permeability in a voltage-gated sodium channel. Embo J., 35, 2016
6L9S	Crystal structure of Na-dithionite reduced auracyanin from photosynthetic bacterium Roseiflexus castenholzii 分子名称: Blue (Type 1) copper domain protein, COPPER (I) ION 著者 Wang, C, Zhang, C.Y, Min, Z.Z, Xu, X.L. 登録日 2019-11-10 公開日 2020-01-29 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural basis underlying the electron transfer features of a blue copper protein auracyanin from the photosynthetic bacterium Roseiflexus castenholzii. Photosyn. Res., 143, 2020
3I3B	E.coli (lacz) Beta-Galactosidase (M542A) in Complex with D-Galactopyranosyl-1-on 分子名称: Beta-galactosidase, D-galactonolactone, DIMETHYL SULFOXIDE, ... 著者 Dugdale, M.L, Dymianiw, D, Minhas, B, Huber, R.E. 登録日 2009-06-30 公開日 2010-05-12 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Role of Met-542 as a guide for the conformational changes of Phe-601 that occur during the reaction of β-galactosidase (Escherichia coli). Biochem.Cell Biol., 88, 2010
6RFB	Crystal structure of the potassium-pumping S254A mutant of the light-driven sodium pump KR2 in the monomeric form, pH 4.3 分子名称: EICOSANE, GLYCEROL, RETINAL, ... 著者 Kovalev, K, Polovinkin, V, Gushchin, I, Borshchevskiy, V, Gordeliy, V. 登録日 2019-04-12 公開日 2019-04-24 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structure and mechanisms of sodium-pumping KR2 rhodopsin. Sci Adv, 5, 2019
6ZPL	Inward-open structure of human glycine transporter 1 in complex with a benzoylisoindoline inhibitor, sybody Sb_GlyT1#7 and bound Na and Cl ions. 分子名称: CHLORIDE ION, Endoglucanase H, SODIUM ION, ... 著者 Shahsavar, A, Stohler, P, Bourenkov, G, Zimmermann, I, Siegrist, M, Guba, W, Pinard, E, Sinning, S, Seeger, M.A, Schneider, T.R, Dawson, R.J.P, Nissen, P. 登録日 2020-07-08 公開日 2021-03-17 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3.945 Å) 主引用文献 Structural insights into the inhibition of glycine reuptake. Nature, 591, 2021
4XHF	Crystal structure of Shewanella oneidensis NqrC 分子名称: FLAVIN MONONUCLEOTIDE, Na-translocating NADH-quinone reductase subunit C NqrC, SODIUM ION 著者 Tomchick, D.R, Brautigam, C.A, Deka, R.K, Norgard, M.V. 登録日 2015-01-05 公開日 2015-12-16 最終更新日 2016-03-16 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 Molecular insights into the enzymatic diversity of flavin-trafficking protein (Ftp; formerly ApbE) in flavoprotein biogenesis in the bacterial periplasm. Microbiologyopen, 5, 2016
6K21	Pyrophosphatase from Acinetobacter baumannii 分子名称: Inorganic pyrophosphatase, MAGNESIUM ION, SODIUM ION 著者 Su, J. 登録日 2019-05-13 公開日 2019-10-02 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal Structures of Pyrophosphatase from Acinetobacter baumannii: Snapshots of Pyrophosphate Binding and Identification of a Phosphorylated Enzyme Intermediate. Int J Mol Sci, 20, 2019
5BZ3	CRYSTAL STRUCTURE OF SODIUM PROTON ANTIPORTER NAPA IN OUTWARD-FACING CONFORMATION. 分子名称: (2R)-2,3-DIHYDROXYPROPYL (7Z)-TETRADEC-7-ENOATE, Na(+)/H(+) antiporter 著者 Coincon, M, Uzdavinys, P, Emmanuel, N, Cameron, A, Drew, D. 登録日 2015-06-11 公開日 2016-01-20 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structures reveal the molecular basis of ion translocation in sodium/proton antiporters. Nat.Struct.Mol.Biol., 23, 2016
4ED2	Human DNA polymerase eta - DNA ternary complex: AT crystal at pH 7.2 (Na+ HEPES) with 1 Ca2+ ion 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... 著者 Nakamura, T, Zhao, Y, Yang, W. 登録日 2012-03-26 公開日 2012-07-11 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.711 Å) 主引用文献 Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
7EVI	Odinarchaeota tubulin (OdinTubulin) H393D mutant, in a protofilament arrangement, bound to 79% GTP, 21% GDP, Na+, Mg2+ 分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Robinson, R.C, Akil, C, Tran, L.T. 登録日 2021-05-21 公開日 2022-03-23 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Structure and dynamics of Odinarchaeota tubulin and the implications for eukaryotic microtubule evolution. Sci Adv, 8, 2022
7EVE	Odinarchaeota tubulin (OdinTubulin) H393D mutant, in a protofilament arrangement, bound to 100% GDP and 2 Na+ 分子名称: GUANOSINE-5'-DIPHOSPHATE, SODIUM ION, Tubulin-like protein 著者 Robinson, R.C, Akil, C, Tran, L.T. 登録日 2021-05-21 公開日 2022-03-23 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure and dynamics of Odinarchaeota tubulin and the implications for eukaryotic microtubule evolution. Sci Adv, 8, 2022
7EVC	Odinarchaeota tubulin (OdinTubulin) H393D mutant, in a protofilament arrangement, bound to 60% GTP/40% GDP and 2 Na+ 分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, SODIUM ION, ... 著者 Robinson, R.C, Akil, C, Tran, L.T. 登録日 2021-05-21 公開日 2022-03-23 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Structure and dynamics of Odinarchaeota tubulin and the implications for eukaryotic microtubule evolution. Sci Adv, 8, 2022
7EVB	Odinarchaeota tubulin (OdinTubulin) H393D mutant, in a protofilament arrangement, bound to 77% GTP/23% and 2 Na+ 分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, SODIUM ION, ... 著者 Robinson, R.C, Akil, C. 登録日 2021-05-21 公開日 2022-03-23 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 Structure and dynamics of Odinarchaeota tubulin and the implications for eukaryotic microtubule evolution. Sci Adv, 8, 2022
7EVL	Odinarchaeota tubulin (OdinTubulin) H393D mutant, in a protofilament arrangement, bound to 64% GTP/36% GDP and 2 Na+ in a small unit cell 分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, SODIUM ION, ... 著者 Robinson, R.C, Akil, C, Tran, L.T. 登録日 2021-05-21 公開日 2022-03-23 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structure and dynamics of Odinarchaeota tubulin and the implications for eukaryotic microtubule evolution. Sci Adv, 8, 2022
7EVD	Odinarchaeota tubulin (OdinTubulin) H393D mutant, in a protofilament arrangement, bound to 53% GTP/47% and 2 Na+ 分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, SODIUM ION, ... 著者 Robinson, R.C, Akil, C, Tran, L.T. 登録日 2021-05-21 公開日 2022-03-23 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Structure and dynamics of Odinarchaeota tubulin and the implications for eukaryotic microtubule evolution. Sci Adv, 8, 2022
7EVK	Odinarchaeota tubulin (OdinTubulin) H393D mutant, in a protofilament arrangement, bound to 78% GTP, 22% GDP, Na+ 分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, SODIUM ION, ... 著者 Robinson, R.C, Akil, C, Tran, L.T. 登録日 2021-05-21 公開日 2022-03-23 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structure and dynamics of Odinarchaeota tubulin and the implications for eukaryotic microtubule evolution. Sci Adv, 8, 2022
7CH1	The overall structure of SLC26A9 分子名称: CHLORIDE ION, SODIUM ION, Solute carrier family 26 member 9 著者 Chi, X.M, Chen, Y, Li, X.R, Zhang, Y.Y, Zhou, Q. 登録日 2020-07-03 公開日 2020-08-26 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (2.6 Å) 主引用文献 Structural insights into the gating mechanism of human SLC26A9 mediated by its C-terminal sequence. Cell Discov, 6, 2020
6X00	Structure of DbNA(11) peptides bound to H-2Db MHC-I 分子名称: Beta-2-microglobulin, Epitope from Neuraminidase Protein (NA-181-191), H-2 class I histocompatibility antigen, ... 著者 Farenc, C, Rossjohn, J. 登録日 2020-05-14 公開日 2020-09-16 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Overlapping Peptides Elicit Distinct CD8 + T Cell Responses following Influenza A Virus Infection. J Immunol., 205, 2020
6WZY	Structure of DbNA(10) peptides bound to H-2Db MHC-I 分子名称: 1,2-ETHANEDIOL, Beta-2-microglobulin, DI(HYDROXYETHYL)ETHER, ... 著者 Farenc, C, Rossjohn, J. 登録日 2020-05-14 公開日 2020-09-16 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Overlapping Peptides Elicit Distinct CD8 + T Cell Responses following Influenza A Virus Infection. J Immunol., 205, 2020
3LDD	High resolution open MthK pore structure crystallized in 100 mM K+ and further soaked in 99 mM Na+/1 mM K+. 分子名称: Calcium-gated potassium channel mthK, POTASSIUM ION 著者 Ye, S. 登録日 2010-01-12 公開日 2010-08-11 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Novel insights into K(+) selectivity from high-resolution structures of an open K(+) channel pore. Nat.Struct.Mol.Biol., 17, 2010
8CTW	Crystal structure of a K+ selective NaK mutant (NaK2K) -Na+,Tl+ complex 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Potassium channel protein, SODIUM ION, ... 著者 Lee, B, White, K.I, Socolich, M.A, Klureza, M.A, Henning, R, Srajer, V, Ranganathan, R, Hekstra, D. 登録日 2022-05-16 公開日 2023-06-14 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Direct visualization of electric field-stimulated ion conduction in a potassium channel To Be Published

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