PDB: 66478 件ウェブページステータス検索Chemie searchBIRD

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8PDA	cryo-EM structure of Doa10 with RING domain in MSP1E3D1 分子名称: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE, ERAD-associated E3 ubiquitin-protein ligase DOA10 著者 Botsch, J.J, Braeuning, B, Schulman, B.A. 登録日 2023-06-12 公開日 2024-01-17 実験手法 ELECTRON MICROSCOPY (3.58 Å) 主引用文献 Doa10/MARCH6 architecture interconnects E3 ligase activity with lipid-binding transmembrane channel to regulate SQLE. Nat Commun, 15, 2024
8OOQ	Glutamine synthetase from Methanothermococcus thermolithotrophicus in complex with 2-oxoglutarate and Mg at 2.91 A resolution 分子名称: 1,2-ETHANEDIOL, 2-OXOGLUTARIC ACID, DI(HYDROXYETHYL)ETHER, ... 著者 Mueller, M.-C, Wagner, T. 登録日 2023-04-05 公開日 2024-01-24 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.91 Å) 主引用文献 Differences in regulation mechanisms of glutamine synthetases from methanogenic archaea unveiled by structural investigations. Commun Biol, 7, 2024
6D4L	Joint X-ray/neutron structure of DNA oligonucleotide d(GTGGCCAC)2 with 2'-SeCH3 modification on Cyt5 分子名称: DNA (5'-D(*GP*TP*GP*GP*(CSL)P*CP*AP*C)-3'), MAGNESIUM ION 著者 Kovalevsky, A, Huang, Z, Vandavasi, V.G. 登録日 2018-04-18 公開日 2018-10-17 最終更新日 2023-10-04 実験手法 NEUTRON DIFFRACTION (1.56 Å), X-RAY DIFFRACTION 主引用文献 Temperature-Induced Replacement of Phosphate Proton with Metal Ion Captured in Neutron Structures of A-DNA. Structure, 26, 2018
8OWD	Lipidic amyloid-beta(1-40) fibril - polymorph L3 分子名称: Amyloid-beta A4 protein 著者 Frieg, B, Han, M, Giller, K, Dienemann, C, Riedel, D, Becker, S, Andreas, L.B, Griesinger, C, Schroeder, G.F. 登録日 2023-04-27 公開日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.28 Å) 主引用文献 Cryo-EM structures of lipidic fibrils of amyloid-beta (1-40). Nat Commun, 15, 2024
8OVK	Lipidic amyloid-beta(1-40) fibril - polymorph L1 分子名称: Amyloid-beta A4 protein 著者 Frieg, B, Han, M, Giller, K, Dienemann, C, Riedel, D, Becker, S, Andreas, L.B, Griesinger, C, Schroeder, G.F. 登録日 2023-04-26 公開日 2024-03-06 実験手法 ELECTRON MICROSCOPY (2.88 Å) 主引用文献 Cryo-EM structures of lipidic fibrils of amyloid-beta (1-40). Nat Commun, 15, 2024
8OWJ	Lipidic amyloid-beta(1-40) fibril - polymorph L2-L2 分子名称: Amyloid-beta A4 protein 著者 Frieg, B, Han, M, Giller, K, Dienemann, C, Riedel, D, Becker, S, Andreas, L.B, Griesinger, C, Schroeder, G.F. 登録日 2023-04-28 公開日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.75 Å) 主引用文献 Cryo-EM structures of lipidic fibrils of amyloid-beta (1-40). Nat Commun, 15, 2024
8OVM	Lipidic amyloid-beta(1-40) fibril - polymorph L2 分子名称: Amyloid-beta A4 protein 著者 Frieg, B, Han, M, Giller, K, Dienemann, C, Riedel, D, Becker, S, Andreas, L.B, Griesinger, C, Schroeder, G.F. 登録日 2023-04-26 公開日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.24 Å) 主引用文献 Cryo-EM structures of lipidic fibrils of amyloid-beta (1-40). Nat Commun, 15, 2024
8OWE	Lipidic amyloid-beta(1-40) fibril - polymorph L2-L3 分子名称: Amyloid-beta A4 protein 著者 Frieg, B, Han, M, Giller, K, Dienemann, C, Riedel, D, Becker, S, Andreas, L.B, Griesinger, C, Schroeder, G.F. 登録日 2023-04-27 公開日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.75 Å) 主引用文献 Cryo-EM structures of lipidic fibrils of amyloid-beta (1-40). Nat Commun, 15, 2024
8OWK	Lipidic amyloid-beta(1-40) fibril - polymorph L3-L3 分子名称: Amyloid-beta A4 protein 著者 Frieg, B, Han, M, Giller, K, Dienemann, C, Riedel, D, Becker, S, Andreas, L.B, Griesinger, C, Schroeder, G.F. 登録日 2023-04-28 公開日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.86 Å) 主引用文献 Cryo-EM structures of lipidic fibrils of amyloid-beta (1-40). Nat Commun, 15, 2024
6UH9	Crystal structure of DAD2 D166A mutant 分子名称: Decreased Apical Dominance 2, TETRAETHYLENE GLYCOL 著者 Sharma, P, Hamiaux, C, Snowden, K.C. 登録日 2019-09-27 公開日 2020-02-26 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.52 Å) 主引用文献 Flexibility of the petunia strigolactone receptor DAD2 promotes its interaction with signaling partners. J.Biol.Chem., 295, 2020
6WK0	Crystal structure of human ribokinase in complex with AMPPCP and ribose 分子名称: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Ribokinase, SODIUM ION, ... 著者 Park, J. 登録日 2020-04-15 公開日 2021-04-21 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structures of human ribokinase To Be Published
6D54	Low Temperature joint X-ray/neutron structure of DNA oligonucleotide d(GTGGCCAC)2 with 2'-SeCH3 modification on Cyt5 分子名称: DNA (5'-D(*GP*TP*GP*GP*(CSL)P*CP*AP*C)-3'), MAGNESIUM ION 著者 Kovalevsky, A, Huang, Z, Vandavasi, V.G. 登録日 2018-04-19 公開日 2018-10-17 最終更新日 2023-10-04 実験手法 NEUTRON DIFFRACTION (1.65 Å), X-RAY DIFFRACTION 主引用文献 Temperature-Induced Replacement of Phosphate Proton with Metal Ion Captured in Neutron Structures of A-DNA. Structure, 26, 2018
8Q7R	Ubiquitin ligation to substrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB-Sil1 peptide 分子名称: 5-azanyl-1-oxidanyl-pentan-2-one, Cullin-2, E3 ubiquitin-protein ligase RBX1, ... 著者 Liwocha, J, Prabu, J.R, Kleiger, G, Schulman, B.A. 登録日 2023-08-16 公開日 2024-02-21 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.71 Å) 主引用文献 Cullin-RING ligases employ geometrically optimized catalytic partners for substrate targeting. Mol.Cell, 84, 2024
8Q5W	MgADP-bound Fe protein of the molybdenum nitrogenase from Methanocaldococcus infernus 分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, ... 著者 Maslac, N, Wagner, T. 登録日 2023-08-09 公開日 2024-05-15 最終更新日 2024-08-14 実験手法 X-RAY DIFFRACTION (2.49 Å) 主引用文献 Structural comparison of (hyper-)thermophilic nitrogenase reductases from three marine Methanococcales. Febs J., 291, 2024
8PRW	Cryo-EM structure of the yeast fatty acid synthase at 1.9 angstrom resolution 分子名称: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, COENZYME A, Fatty acid synthase subunit alpha, ... 著者 Singh, K, Bunzel, G, Graf, B, Yip, K.M, Stark, H, Chari, A. 登録日 2023-07-12 公開日 2023-11-22 実験手法 ELECTRON MICROSCOPY (1.9 Å) 主引用文献 Reconstruction of a fatty acid synthesis cycle from acyl carrier protein and cofactor structural snapshots. Cell, 186, 2023
8PN8	Engineered glycolyl-CoA carboxylase (L100N variant) with bound CoA 分子名称: 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL, COENZYME A, Propionyl-CoA carboxylase alpha subunit, ... 著者 Zarzycki, J, Marchal, D.G, Schulz, L, Prinz, S, Erb, T.J. 登録日 2023-06-30 公開日 2023-11-29 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.31 Å) 主引用文献 Machine Learning-Supported Enzyme Engineering toward Improved CO 2 -Fixation of Glycolyl-CoA Carboxylase. Acs Synth Biol, 12, 2023
8Q9T	CryoEM structure of a S. Cerevisiae Ski238 complex bound to RNA 分子名称: Antiviral helicase SKI2, Antiviral protein SKI8, RNA (5'-R(P*UP*UP*UP*U)-3'), ... 著者 Keidel, A, Koegel, A, Reichelt, P, Kowalinski, E, Schaefer, I.B, Conti, E. 登録日 2023-08-21 公開日 2023-11-29 実験手法 ELECTRON MICROSCOPY (2.84 Å) 主引用文献 Concerted structural rearrangements enable RNA channeling into the cytoplasmic Ski238-Ski7-exosome assembly. Mol.Cell, 83, 2023
8QB3	ADDobody zinc containing condition 分子名称: ADDobody, ZINC ION 著者 Buzas, D, Toelzer, C, Berger, I, Schaffitzel, C. 登録日 2023-08-24 公開日 2023-12-27 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Engineering the ADDobody protein scaffold for generation of high-avidity ADDomer super-binders. Structure, 32, 2024
8Q7S	Crystal structure of the SARS-CoV-2 RBD (Wuhan) with neutralizing VHHs Ma6F06 and Re21H01 分子名称: 1,2-ETHANEDIOL, 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, GLYCEROL, ... 著者 Guttler, T, Aksu, M, Gorlich, D. 登録日 2023-08-16 公開日 2023-12-20 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Nanobodies to multiple spike variants and inhalation of nanobody-containing aerosols neutralize SARS-CoV-2 in cell culture and hamsters. Antiviral Res., 221, 2023
8QBX	Chimeric Adenovirus-derived dodecamer 分子名称: Penton protein 著者 Buzas, D, Borucu, U, Bufton, J, Kapadalakere, S.Y, Toelzer, C. 登録日 2023-08-25 公開日 2023-12-27 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (2.2 Å) 主引用文献 Engineering the ADDobody protein scaffold for generation of high-avidity ADDomer super-binders. Structure, 32, 2024
8PJN	Catalytic module of human CTLH E3 ligase bound to multiphosphorylated UBE2H~ubiquitin 分子名称: E3 ubiquitin-protein transferase MAEA, E3 ubiquitin-protein transferase RMND5A, Ubiquitin, ... 著者 Chrustowicz, J, Sherpa, D, Prabu, R.J, Schulman, B.A. 登録日 2023-06-23 公開日 2024-01-03 最終更新日 2024-01-31 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Multisite phosphorylation dictates selective E2-E3 pairing as revealed by Ubc8/UBE2H-GID/CTLH assemblies. Mol.Cell, 84, 2024
8PMQ	Catalytic module of yeast GID E3 ligase bound to multiphosphorylated Ubc8~ubiquitin 分子名称: E3 ubiquitin-protein ligase RMD5, Protein FYV10, Ubiquitin, ... 著者 Chrustowicz, J, Sherpa, D, Prabu, R.J, Schulman, B.A. 登録日 2023-06-29 公開日 2024-01-03 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.53 Å) 主引用文献 Multisite phosphorylation dictates selective E2-E3 pairing as revealed by Ubc8/UBE2H-GID/CTLH assemblies. Mol.Cell, 84, 2024
8QCF	yeast cytoplasmic exosome-Ski2 complex degrading a RNA substrate 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Antiviral helicase SKI2, Exosome complex component CSL4, ... 著者 Keidel, A, Koegel, A, Reichelt, P, Kowalinski, E, Schaefer, I.B, Conti, E. 登録日 2023-08-25 公開日 2024-01-10 実験手法 ELECTRON MICROSCOPY (2.55 Å) 主引用文献 Concerted structural rearrangements enable RNA channeling into the cytoplasmic Ski238-Ski7-exosome assembly. Mol.Cell, 83, 2023
8Q0N	HACE1 in complex with RAC1 Q61L 分子名称: E3 ubiquitin-protein ligase HACE1, GUANOSINE-5'-TRIPHOSPHATE, Ras-related C3 botulinum toxin substrate 1, ... 著者 Wolter, M, Duering, J, Dienemann, C, Lorenz, S. 登録日 2023-07-28 公開日 2024-01-10 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Structural mechanisms of autoinhibition and substrate recognition by the ubiquitin ligase HACE1. Nat.Struct.Mol.Biol., 31, 2024
8PWL	Cryo-EM structure of a full-length HACE1 dimer 分子名称: E3 ubiquitin-protein ligase HACE1 著者 Duering, J, Wolter, M, Dienemann, C, Lorenz, S. 登録日 2023-07-20 公開日 2024-01-10 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (4.73 Å) 主引用文献 Structural mechanisms of autoinhibition and substrate recognition by the ubiquitin ligase HACE1. Nat.Struct.Mol.Biol., 31, 2024

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