PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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326D	CRYSTAL STRUCTURES OF D(CM5CGGGCCM5CGG)-ORTHOGONAL FORM 分子名称: DNA (5'-D(*CP*(5CM)P*GP*GP*GP*CP*CP*(5CM)P*GP*G)-3'), SPERMINE 著者 Tippin, D.B, Sundaralingam, M. 登録日 1997-03-17 公開日 1997-05-22 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA. J.Mol.Biol., 267, 1997
322D	CRYSTAL STRUCTURES OF D(CCGGGCCM5CGG)-HEXAGONAL FORM 分子名称: DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*(5CM)P*GP*G)-3') 著者 Tippin, D.B, Sundaralingam, M. 登録日 1997-03-17 公開日 1997-05-22 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA. J.Mol.Biol., 267, 1997
321D	CRYSTAL STRUCTURES OF D(CCGGGCCCGG)-ORTHOGONAL FORM 分子名称: DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*CP*GP*G)-3'), SPERMINE 著者 Tippin, D.B, Sundaralingam, M. 登録日 1997-03-17 公開日 1997-05-22 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA. J.Mol.Biol., 267, 1997
399D	STRUCTURE OF D(CGCCCGCGGGCG) 分子名称: DNA (5'-D(*CP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*G)-3') 著者 Malinina, L, Fernandez, L.G, Subirana, J.A. 登録日 1998-05-11 公開日 1999-01-18 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure of the d(CGCCCGCGGGCG) dodecamer: a kinked A-DNA molecule showing some B-DNA features. J.Mol.Biol., 285, 1999
318D	CRYSTAL STRUCTURES OF D(CCGGGCC(BR)5CGG)-HEXAGONAL FORM 分子名称: DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*(CBR)P*GP*G)-3') 著者 Tippin, D.B, Sundaralingam, M. 登録日 1997-03-17 公開日 1997-05-22 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA. J.Mol.Biol., 267, 1997
320D	CRYSTAL STRUCTURES OF D(CCGGGCCCGG)-ORTHOGONAL FORM 分子名称: DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*CP*GP*G)-3'), SPERMINE 著者 Tippin, D.B, Sundaralingam, M. 登録日 1997-03-17 公開日 1997-05-22 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA. J.Mol.Biol., 267, 1997
319D	CRYSTAL STRUCTURES OF D(CCGGG(BR)5CCCGG)-ORTHOGONAL FORM 分子名称: DNA (5'-D(*CP*CP*GP*GP*GP*(CBR)P*CP*CP*GP*G)-3'), THERMINE 著者 Tippin, D.B, Sundaralingam, M. 登録日 1997-03-17 公開日 1997-05-22 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA. J.Mol.Biol., 267, 1997
5UUJ	Streptomyces sahachiroi DNA glycosylase AlkZ 分子名称: AlkZ 著者 Mullins, E.A, Eichman, B.F. 登録日 2017-02-16 公開日 2017-04-12 最終更新日 2019-11-27 実験手法 X-RAY DIFFRACTION (2.299 Å) 主引用文献 Structure of a DNA glycosylase that unhooks interstrand cross-links. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
1GQU	Crystal structure of an alternating A-T oligonucleotide fragment with Hoogsteen base pairing 分子名称: DNA (5'(*AP*TP*AP*UP*AP*T)-3') 著者 Abrescia, N.G.A, Thompson, A, Huynh-Dinh, T, Subirana, J.A. 登録日 2001-12-05 公開日 2002-12-05 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal Structure of an Antiparallel DNA Fragment with Hoogsteen Base Pairing Proc.Natl.Acad.Sci.USA, 99, 2002
324D	CRYSTAL STRUCTURES OF D(CCGGGCCM5CGG)-ORTHOGONAL FORM 分子名称: DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*(5CM)P*GP*G)-3'), SPERMINE 著者 Tippin, D.B, Sundaralingam, M. 登録日 1997-03-17 公開日 1997-05-22 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA. J.Mol.Biol., 267, 1997
323D	CRYSTAL STRUCTURES OF D(CCGGGCCM5CGG)-ORTHOGONAL FORM 分子名称: DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*(5CM)P*GP*G)-3'), SPERMINE 著者 Tippin, D.B, Sundaralingam, M. 登録日 1997-03-17 公開日 1997-05-22 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA. J.Mol.Biol., 267, 1997
325D	CRYSTAL STRUCTURES OF D(CM5CGGGCCM5CGG)-HEXAGONAL FORM 分子名称: DNA (5'-D(*CP*(5CM)P*GP*GP*GP*CP*CP*(5CM)P*GP*G)-3') 著者 Tippin, D.B, Sundaralingam, M. 登録日 1997-03-17 公開日 1997-05-22 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA. J.Mol.Biol., 267, 1997
3VU7	Crystal structure of REV1-REV7-REV3 ternary complex 分子名称: DNA polymerase zeta catalytic subunit, DNA repair protein REV1, Mitotic spindle assembly checkpoint protein MAD2B 著者 Kikuchi, S, Hara, K, Shimizu, T, Sato, M, Hashimoto, H. 登録日 2012-06-20 公開日 2012-08-08 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural basis of recruitment of DNA polymerase [zeta] by interaction between REV1 and REV7 proteins J.Biol.Chem., 287, 2012
7K33	Crystal structure of Endonuclease Q complex with 27-mer duplex substrate with an abasic lesion at the active site 分子名称: DNA (27-MER), Endonuclease Q, MAGNESIUM ION, ... 著者 Shi, K, Moeller, N.M, Banerjee, S, Yin, L, Orellana, K, Aihara, H. 登録日 2020-09-10 公開日 2021-03-17 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.11 Å) 主引用文献 Structural basis for recognition of distinct deaminated DNA lesions by endonuclease Q. Proc.Natl.Acad.Sci.USA, 118, 2021
7K32	Crystal structure of Endonuclease Q complex with 27-mer duplex substrate with an abasic lesion at the active site 分子名称: DNA (27-MER), Endonuclease Q, MAGNESIUM ION, ... 著者 Shi, K, Moeller, N.M, Banerjee, S, Yin, L, Orellana, K, Aihara, H. 登録日 2020-09-10 公開日 2021-03-17 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.11 Å) 主引用文献 Structural basis for recognition of distinct deaminated DNA lesions by endonuclease Q. Proc.Natl.Acad.Sci.USA, 118, 2021
5LOD	Crystal structure of HhaI DNA methyltransferase in APO form 分子名称: Modification methylase HhaI, SULFATE ION 著者 Rondelet, G, Wouters, J. 登録日 2016-08-09 公開日 2017-08-16 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Inhibition studies of DNA methyltransferases by maleimide derivatives of RG108 as non-nucleoside inhibitors. Future Med Chem, 9, 2017
4WXX	The crystal structure of human DNMT1(351-1600) 分子名称: DNA (cytosine-5)-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION 著者 Zhang, Z.M, Song, J. 登録日 2014-11-14 公開日 2015-07-15 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.622 Å) 主引用文献 Crystal Structure of Human DNA Methyltransferase 1. J.Mol.Biol., 427, 2015
3JR4	MutM interrogating an extrahelical G 分子名称: DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*G*CP*GP*TP*CP*CP*AP*(GX1)P*GP*TP*CP*TP*AP*CP*C)-3'), DNA glycosylase, ... 著者 Qi, Y, Spong, M.C, Verdine, G.L. 登録日 2009-09-08 公開日 2009-11-03 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.601 Å) 主引用文献 Entrapment and structure of an extrahelical guanine attempting to enter the active site of a bacterial DNA glycosylase, MutM. J.Biol.Chem., 285, 2010
1C7Y	E.COLI RUVA-HOLLIDAY JUNCTION COMPLEX 分子名称: DNA (5'-D(P*DAP*DAP*DGP*DTP*DTP*DGP*DGP*DGP*DAP*DTP*DTP*DGP*DT)-3'), DNA (5'-D(P*DCP*DAP*DAP*DTP*DCP*DCP*DCP*DAP*DAP*DCP*DTP*DT)-3'), DNA (5'-D(P*DCP*DGP*DAP*DAP*DTP*DGP*DTP*DGP*DTP*DGP*DTP*DCP*DT)-3'), ... 著者 Ariyoshi, M, Nishino, T, Iwasaki, H, Shinagawa, H, Morikawa, K. 登録日 2000-04-03 公開日 2000-07-21 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Crystal structure of the holliday junction DNA in complex with a single RuvA tetramer. Proc.Natl.Acad.Sci.USA, 97, 2000
3JR5	MutM lesion recognition control complex with N174C crosslinking site 分子名称: DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*(OGX)P*AP*GP*TP*CP*TP*AP*CP*C)-3'), DNA glycosylase, ... 著者 Qi, Y, Spong, M.C, Verdine, G.L. 登録日 2009-09-08 公開日 2009-11-03 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.704 Å) 主引用文献 Entrapment and structure of an extrahelical guanine attempting to enter the active site of a bacterial DNA glycosylase, MutM. J.Biol.Chem., 285, 2010
5VBS	Structural basis for a six letter alphabet including GATCKX 分子名称: DNA (5'-D(*CP*TP*TP*AP*TP*(DX)P*(DX)P*T)-3'), DNA (5'-D(P*AP*(93D)P*(93D)P*AP*TP*AP*AP*G)-3'), reverse transcriptase catalytic fragment 著者 Singh, I, Georgiadis, M.M. 登録日 2017-03-30 公開日 2018-03-07 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.749 Å) 主引用文献 Structure and Biophysics for a Six Letter DNA Alphabet that Includes Imidazo[1,2-a]-1,3,5-triazine-2(8H)-4(3H)-dione (X) and 2,4-Diaminopyrimidine (K). ACS Synth Biol, 6, 2017
8WHB	Structure of nucleosome core particle of Arabidopsis thaliana 分子名称: DNA (antisense strand), DNA (sense strand), Histone H2A.6, ... 著者 Liu, Y, Zhang, Z, Du, J. 登録日 2023-09-23 公開日 2024-04-17 実験手法 ELECTRON MICROSCOPY (3.17 Å) 主引用文献 Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation. Nat.Plants, 10, 2024
5WJR	High resolution native hexamer DNA and RNA hybrid in complex with RNase H catalytic domain D132N mutant 分子名称: DNA (5'-D(*AP*TP*GP*TP*CP*G)-3'), MAGNESIUM ION, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), ... 著者 Fang, Z, Huang, Z. 登録日 2017-07-24 公開日 2017-08-09 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Synthesis of Pyrimidine Modified Seleno-DNA as a Novel Approach to Antisense Candidate Chemistryselect, 8, 2023
2PVC	DNMT3L recognizes unmethylated histone H3 lysine 4 分子名称: DNA (cytosine-5)-methyltransferase 3-like, Histone H3 peptide, ZINC ION 著者 Cheng, X. 登録日 2007-05-09 公開日 2007-08-14 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.69 Å) 主引用文献 DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA. Nature, 448, 2007
3B0X	K263A mutant of PolX from Thermus thermophilus HB8 complexed with Ca-dGTP 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, CHLORIDE ION, ... 著者 Nakane, S, Nakagawa, N, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2011-06-17 公開日 2012-05-02 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.36 Å) 主引用文献 The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA. J.Mol.Biol., 417, 2012

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