PDB: 13487 件ウェブページステータス検索Chemie searchBIRD

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2C62	Crystal Structure of the Human Transcription Cofactor PC4 in Complex with Single-Stranded DNA 分子名称: 5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP *TP*TP*TP*TP*TP*TP*TP*TP*TP*G)-3', ACTIVATED RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR P15, SULFATE ION 著者 Werten, S, Moras, D. 登録日 2005-11-07 公開日 2006-01-11 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.74 Å) 主引用文献 A Global Transcription Cofactor Bound to Juxtaposed Strands of Unwound DNA Nat.Struct.Mol.Biol., 13, 2006
5XE7	Crystal structure of Mycobacterium tuberculosis extracytoplasmic function sigma factor SigJ 分子名称: ECF RNA polymerase sigma factor SigJ 著者 Goutam, K, Gopal, B. 登録日 2017-04-01 公開日 2017-07-19 最終更新日 2017-10-04 実験手法 X-RAY DIFFRACTION (2.162 Å) 主引用文献 The fused SnoaL_2 domain in the Mycobacterium tuberculosis sigma factor sigma J modulates promoter recognition Nucleic Acids Res., 45, 2017
6YWN	CutA in complex with CMPCPP 分子名称: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, CALCIUM ION, CutA 著者 Malik, D, Kobylecki, K, Krawczyk, P, Poznanski, J, Jakielaszek, A, Napiorkowska, A, Dziembowski, A, Tomecki, R, Nowotny, M. 登録日 2020-04-29 公開日 2020-08-05 最終更新日 2020-09-30 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Structure and mechanism of CutA, RNA nucleotidyl transferase with an unusual preference for cytosine. Nucleic Acids Res., 48, 2020
6NZ2	NMR solution structure of Bcd1p120-303 from Saccharomyces cerevisiae 分子名称: Box C/D snoRNA protein 1 著者 Bragantini, B, Quinternet, M, Charpentier, B, Manival, X. 登録日 2019-02-12 公開日 2020-08-19 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 The box C/D snoRNP assembly factor Bcd1 interacts with the histone chaperone Rtt106 and controls its transcription dependent activity. Nat Commun, 12, 2021
6YWP	Structure of apo-CutA 分子名称: CutA, MAGNESIUM ION 著者 Malik, D, Kobylecki, K, Krawczyk, P, Poznanski, J, Jakielaszek, A, Napiorkowska, A, Dziembowski, A, Tomecki, R, Nowotny, M. 登録日 2020-04-29 公開日 2020-08-05 最終更新日 2020-09-30 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structure and mechanism of CutA, RNA nucleotidyl transferase with an unusual preference for cytosine. Nucleic Acids Res., 48, 2020
6BCD	Crystal structure of Rev7-K44A/R124A/A135D in complex with Rev3-RBM2 (residues 1988-2014) 分子名称: DNA polymerase zeta catalytic subunit, Mitotic spindle assembly checkpoint protein MAD2B 著者 Rizzo, A.A, Hao, B, Li, Y, Korzhnev, D.M. 登録日 2017-10-20 公開日 2018-08-01 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.43 Å) 主引用文献 Rev7 dimerization is important for assembly and function of the Rev1/Pol zeta translesion synthesis complex. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7M09	Pre-catalytic quaternary complex of DNA Polymerase Lambda with blunt-ended DSB substrate and incoming dUMPNPP 分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CALCIUM ION, CHLORIDE ION, ... 著者 Kaminski, A.M, Bebenek, K, Pedersen, L.C, Kunkel, T.A. 登録日 2021-03-10 公開日 2022-03-16 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Analysis of diverse double-strand break synapsis with Pol lambda reveals basis for unique substrate specificity in nonhomologous end-joining. Nat Commun, 13, 2022
7M0D	Pre-catalytic quaternary complex of DNA Polymerase Lambda with bound complementary DSB substrate and incoming dUMPNPP 分子名称: 1,2-ETHANEDIOL, 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ... 著者 Kaminski, A.M, Bebenek, K, Pedersen, L.C, Kunkel, T.A. 登録日 2021-03-10 公開日 2022-03-16 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Analysis of diverse double-strand break synapsis with Pol lambda reveals basis for unique substrate specificity in nonhomologous end-joining. Nat Commun, 13, 2022
7M0B	Pre-catalytic quaternary complex of DNA Polymerase Lambda with bound mismatched DSB and incoming dUMPNPP 分子名称: 1,2-ETHANEDIOL, 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CHLORIDE ION, ... 著者 Kaminski, A.M, Bebenek, K, Pedersen, L.C, Kunkel, T.A. 登録日 2021-03-10 公開日 2022-03-16 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Analysis of diverse double-strand break synapsis with Pol lambda reveals basis for unique substrate specificity in nonhomologous end-joining. Nat Commun, 13, 2022
7M07	Pre-catalytic ternary complex of DNA Polymerase Lambda with bound 1-nt gapped SSB substrate and incoming dUMPNPP 分子名称: 1,2-ETHANEDIOL, 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CHLORIDE ION, ... 著者 Kaminski, A.M, Bebenek, K, Pedersen, L.C, Kunkel, T.A. 登録日 2021-03-10 公開日 2022-03-16 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.57 Å) 主引用文献 Analysis of diverse double-strand break synapsis with Pol lambda reveals basis for unique substrate specificity in nonhomologous end-joining. Nat Commun, 13, 2022
6BC8	Crystal structure of Rev7-R124A/Rev3-RBM2 (residues 1988-2014) complex 分子名称: ACETATE ION, DNA polymerase zeta catalytic subunit, Mitotic spindle assembly checkpoint protein MAD2B, ... 著者 Rizzo, A.A, Hao, B, Li, Y, Korzhnev, D.M. 登録日 2017-10-20 公開日 2018-08-01 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.68 Å) 主引用文献 Rev7 dimerization is important for assembly and function of the Rev1/Pol zeta translesion synthesis complex. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6XEO	Structure of Mfd bound to dsDNA 分子名称: DNA (5'-D(P*AP*GP*GP*AP*TP*AP*CP*TP*TP*AP*CP*AP*GP*CP*CP*AP*TP*C)-3'), DNA (5'-D(P*GP*AP*TP*GP*GP*CP*TP*GP*TP*AP*AP*GP*TP*AP*TP*CP*CP*T)-3'), Transcription-repair-coupling factor 著者 Brugger, C, Deaconescu, A. 登録日 2020-06-12 公開日 2020-08-19 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (5.5 Å) 主引用文献 Molecular determinants for dsDNA translocation by the transcription-repair coupling and evolvability factor Mfd. Nat Commun, 11, 2020
4P9A	X-ray Crystal Structure of PA protein from Influenza strain H7N9 分子名称: GLYCEROL, Polymerase PA 著者 Fairman, J.W, Moen, S.O, Clifton, M.C, Edwards, T.E, Lorimer, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2014-04-02 公開日 2014-07-30 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.1999 Å) 主引用文献 Structural analysis of H1N1 and H7N9 influenza A virus PA in the absence of PB1. Sci Rep, 4, 2014
6BI7	Crystal structure of Rev7-WT/Rev3 as a monomer under high-salt conditions 分子名称: DNA polymerase zeta catalytic subunit, Mitotic spindle assembly checkpoint protein MAD2B 著者 Rizzo, A.A, Korzhnev, D.M, Hao, B, Li, Y. 登録日 2017-11-01 公開日 2018-08-01 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Rev7 dimerization is important for assembly and function of the Rev1/Pol zeta translesion synthesis complex. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
2HHX	O6-methyl-guanine in the polymerase template preinsertion site 分子名称: 5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*G)-3', DNA Polymerase I, ... 著者 Warren, J.J, Forsberg, L.J, Beese, L.S. 登録日 2006-06-28 公開日 2006-12-12 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.26 Å) 主引用文献 The structural basis for the mutagenicity of O6-methyl-guanine lesions. Proc.Natl.Acad.Sci.Usa, 103, 2006
6FS6	Influenza A/California/04/2009 (pH1N1) endonuclease with bound inhibitor, baloxavir acid (BXA) 分子名称: Baloxavir acid, MANGANESE (II) ION, Polymerase acidic protein,Polymerase acidic protein 著者 Cusack, S, Speranzini, V. 登録日 2018-02-19 公開日 2018-07-11 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.291 Å) 主引用文献 Characterization of influenza virus variants induced by treatment with the endonuclease inhibitor baloxavir marboxil. Sci Rep, 8, 2018
2HHU	C:O6-methyl-guanine in the polymerase postinsertion site (-1 basepair position) 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*GP*CP*GP*AP*TP*CP*AP*GP*CP*CP*C)-3', 5'-D(*GP*TP*AP*CP*(6OG)P*GP*GP*CP*TP*GP*AP*TP*CP*GP*CP*A)-3', ... 著者 Warren, J.J, Forsberg, L.J, Beese, L.S. 登録日 2006-06-28 公開日 2006-12-12 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The structural basis for the mutagenicity of O6-methyl-guanine lesions. Proc.Natl.Acad.Sci.Usa, 103, 2006
6FS7	Influenza A/California/04/2009 (pH1N1) endonuclease with I38T mutation with bound inhibitor, baloxavir acid (BXA) 分子名称: Baloxavir acid, MANGANESE (II) ION, Polymerase acidic protein,Polymerase acidic protein 著者 Cusack, S, Speranzini, V. 登録日 2018-02-19 公開日 2018-07-11 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Characterization of influenza virus variants induced by treatment with the endonuclease inhibitor baloxavir marboxil. Sci Rep, 8, 2018
4OR6	Structure of Influenza B PB2 cap-binding domain with Q325F mutation complex with GDP 分子名称: GUANOSINE-5'-DIPHOSPHATE, Polymerase basic protein 2 著者 Liu, Y, Fan, J, Zheng, X. 登録日 2014-02-11 公開日 2015-02-25 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.293 Å) 主引用文献 The crystal structure of the PB2 cap-binding domain of influenza B virus reveals a novel cap recognition mechanism. J.Biol.Chem., 290, 2015
2IQH	Influenza A virus nucleoprotein NP at 3.2A resolution 分子名称: Nucleocapsid protein 著者 Ye, Q, Tao, Y.J. 登録日 2006-10-13 公開日 2006-12-26 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 The mechanism by which influenza A virus nucleoprotein forms oligomers and binds RNA. Nature, 444, 2006
4Q46	The second structure of Influenza B PB2 cap-binding domain complex with GDP 分子名称: GUANOSINE-5'-DIPHOSPHATE, Polymerase basic protein 2 著者 Liu, Y, Yang, Y, Zheng, X. 登録日 2014-04-13 公開日 2015-02-25 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The crystal structure of the PB2 cap-binding domain of influenza B virus reveals a novel cap recognition mechanism. J.Biol.Chem., 290, 2015
6Z3U	Structure of the CAK complex form Chaetomium thermophilum 分子名称: CHLORIDE ION, CYCLIN domain-containing protein, Protein kinase domain-containing protein, ... 著者 Peissert, S, Kuper, J, Kisker, C. 登録日 2020-05-22 公開日 2020-12-09 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural basis for CDK7 activation by MAT1 and Cyclin H. Proc.Natl.Acad.Sci.USA, 117, 2020
6PFJ	Structure of S. venezuelae RsiG-WhiG-(ci-di-GMP) complex, P64 crystal form 分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), AmfC protein, RNA polymerase sigma factor 著者 Schumacher, M.A. 登録日 2019-06-21 公開日 2019-11-13 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.08 Å) 主引用文献 c-di-GMP Arms an Anti-sigma to Control Progression of Multicellular Differentiation in Streptomyces. Mol.Cell, 77, 2020
6USR	Telomerase Reverse Transcriptase ternary complex, TERT:DNA:dGpCpp 分子名称: DNA (5'-D(*GP*GP*TP*CP*AP*GP*GP*TP*CP*AP*GP*GP*TP*CP*A)-3'), DNA/RNA (5'-R(*CP*UP*GP*AP*CP*CP*UP*GP*AP*C)-D(P*CP*T)-R(P*GP*AP*C)-D(P*C)-3'), MAGNESIUM ION, ... 著者 Schaich, M.A, Freudenthal, B.D. 登録日 2019-10-28 公開日 2020-06-17 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.93 Å) 主引用文献 Mechanisms of nucleotide selection by telomerase. Elife, 9, 2020
6ONO	Complex structure of WhiB1 and region 4 of SigA in C2221 space group 分子名称: DI(HYDROXYETHYL)ETHER, IRON/SULFUR CLUSTER, RNA polymerase sigma factor SigA, ... 著者 Wan, T, Li, S.R, Beltran, D.G, Schacht, A, Becker, D.C, Zhang, L.M. 登録日 2019-04-22 公開日 2019-11-27 最終更新日 2020-01-22 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structural basis of non-canonical transcriptional regulation by the sigma A-bound iron-sulfur protein WhiB1 in M. tuberculosis. Nucleic Acids Res., 48, 2020

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