PDB: 46169 件ウェブページステータス検索Chemie searchBIRD

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7OOT	X-ray Structure of Interferon Regulatory Factor 4 DNA binding domain bound to an interferon-stimulated response element 分子名称: DNA (5'-D(P*AP*GP*CP*TP*TP*TP*CP*TP*CP*GP*GP*TP*TP*TP*CP*AP*GP*TP*TP*G)-3'), DNA (5'-D(P*TP*CP*AP*AP*CP*TP*GP*AP*AP*AP*CP*CP*GP*AP*GP*AP*AP*AP*GP*C)-3'), Interferon regulatory factor 4, ... 著者 Agnarelli, A, El Omari, K, Alt, A.O, Mancini, E.J. 登録日 2021-05-28 公開日 2022-06-08 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 X-ray Structure of Interferon Regulatory Factor 4 DNA binding domain bound to interferon-stimulated response element To Be Published
4WO2	CRYSTAL STRUCTURE OF HUMAN NATIVE CKIT PROTO-ONCOGENE PROMOTER QUADRUPLEX DNA 分子名称: DNA (5'-D(*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*CP*TP*GP*GP*GP*AP*GP*GP*AP*GP*GP*G)-3'), POTASSIUM ION 著者 wei, D, parkinson, g.n, neidle, s. 登録日 2014-10-15 公開日 2014-10-22 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.82 Å) 主引用文献 CRYSTAL STRUCTURE OF HUMAN NATIVE CKIT-1 PROTO-ONCOGENE PROMOTER QUADRUPLEX DNA TO BE PUBLISHED
7SPM	Replication Initiator Protein REPE54 and cognate DNA sequence with terminal three prime phosphates chemically crosslinked (30 mg/mL EDC, 12 hours, 2 doses). 分子名称: DNA (5'-D(*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*A)-3'), DNA (5'-D(*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*A)-3'), MAGNESIUM ION, ... 著者 Ward, A.R, Snow, C.D. 登録日 2021-11-02 公開日 2021-11-10 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.28 Å) 主引用文献 Stabilizing DNA-Protein Co-Crystals via Intra-Crystal Chemical Ligation of the DNA Crystals, 12, 2022
5LKQ	Protease domain of RadA 分子名称: DNA repair protein RadA 著者 Rapisarda, C, Fronzes, R. 登録日 2016-07-22 公開日 2017-06-07 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.498 Å) 主引用文献 Bacterial RadA is a DnaB-type helicase interacting with RecA to promote bidirectional D-loop extension. Nat Commun, 8, 2017
1YSE	Solution structure of the MAR-binding domain of SATB1 分子名称: DNA-binding protein SATB1 著者 Yamasaki, K, Yamaguchi, H. 登録日 2005-02-08 公開日 2006-01-03 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution Structure and DNA-binding Mode of the Matrix Attachment Region-binding Domain of the Transcription Factor SATB1 That Regulates the T-cell Maturation J.Biol.Chem., 281, 2006
3TOE	Structure of Mth10b 分子名称: DNA/RNA-binding protein Alba 著者 Pan, X.M, Zhang, N, Liu, Y.F, Liu, X. 登録日 2011-09-05 公開日 2012-04-25 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.197 Å) 主引用文献 Molecular mechanism underlying the interaction of typical Sac10b family proteins with DNA. Plos One, 7, 2012
7RZM	Crystal Structure of dnaN DNA polymerase III beta subunit from Stenotrophomonas maltophilia K279a 分子名称: DNA polymerase III subunit beta 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2021-08-27 公開日 2021-10-20 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Crystal Structure of dnaN DNA polymerase III beta subunit from Stenotrophomonas maltophilia K279a To Be Published
3NFG	Crystal structure of Dimerization module of RNA polymerase I subcomplex A49/A34.5 分子名称: DNA-directed RNA polymerase I subunit RPA34, DNA-directed RNA polymerase I subunit RPA49 著者 Geiger, S.R. 登録日 2010-06-10 公開日 2010-09-08 最終更新日 2017-11-08 実験手法 X-RAY DIFFRACTION (2.51 Å) 主引用文献 RNA Polymerase I Contains a TFIIF-Related DNA-Binding Subcomplex. Mol.Cell, 39, 2010
1HUU	DNA-BINDING PROTEIN HU FROM BACILLUS STEAROTHERMOPHILUS 分子名称: PROTEIN HU 著者 White, S.W, Tanaka, I, Appelt, K, Wilson, K.S. 登録日 1998-07-06 公開日 1999-01-13 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 A protein structural motif that bends DNA. Proteins, 5, 1989
1CQT	CRYSTAL STRUCTURE OF A TERNARY COMPLEX CONTAINING AN OCA-B PEPTIDE, THE OCT-1 POU DOMAIN, AND AN OCTAMER ELEMENT 分子名称: DNA (5'-D(*AP*CP*CP*TP*TP*AP*TP*TP*TP*GP*CP*AP*TP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*AP*TP*GP*CP*AP*AP*AP*TP*AP*AP*GP*G)-3'), POU DOMAIN, ... 著者 Chasman, D.I, Cepek, K, Sharp, P.A, Pabo, C.O. 登録日 1999-08-11 公開日 1999-11-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Crystal structure of an OCA-B peptide bound to an Oct-1 POU domain/octamer DNA complex: specific recognition of a protein-DNA interface. Genes Dev., 13, 1999
5ZTJ	Crystal Structure of GyraseA C-Terminal Domain from Salmonella typhi at 2.4A Resolution 分子名称: DNA gyrase subunit A 著者 Sachdeva, E, Gupta, D, Tiwari, P, Kaur, G, Sharma, S, Singh, T.P, Ethayathulla, A.S, Kaur, P. 登録日 2018-05-03 公開日 2019-05-15 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 The pivot point arginines identified in the beta-pinwheel structure of C-terminal domain from Salmonella Typhi DNA Gyrase A subunit. Sci Rep, 10, 2020
6A28	Crystal structure of PprA W183R mutant form 2 分子名称: DNA repair protein PprA, SULFATE ION 著者 Adachi, M, Shibazaki, C, Shimizu, R, Arai, S, Satoh, K, Narumi, I, Kuroki, R. 登録日 2018-06-09 公開日 2018-12-26 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.193 Å) 主引用文献 Extended structure of pleiotropic DNA repair-promoting protein PprA from Deinococcus radiodurans. FASEB J., 33, 2019
6A27	Crystal structure of PprA W183R mutant form 1 分子名称: DNA repair protein PprA, GLYCEROL, SULFATE ION 著者 Adachi, M, Shibazaki, C, Shimizu, R, Arai, S, Satoh, K, Narumi, I, Kuroki, R. 登録日 2018-06-09 公開日 2018-12-26 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.353 Å) 主引用文献 Extended structure of pleiotropic DNA repair-promoting protein PprA from Deinococcus radiodurans. FASEB J., 33, 2019
6A29	Crystal structure of PprA A139R mutant 分子名称: DNA repair protein PprA 著者 Adachi, M, Shibazaki, C, Shimizu, R, Arai, S, Satoh, K, Narumi, I, Kuroki, R. 登録日 2018-06-09 公開日 2018-12-26 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.399 Å) 主引用文献 Extended structure of pleiotropic DNA repair-promoting protein PprA from Deinococcus radiodurans. FASEB J., 33, 2019
5NNX	TEAD1 bound to DNA 分子名称: DNA, Transcriptional enhancer factor TEF-1 著者 Morgunova, E, Jolma, A, Yin, Y, Popov, A, Taipale, J. 登録日 2017-04-10 公開日 2017-04-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.29 Å) 主引用文献 TEAD1 bound to DNA To Be Published
1FLI	DNA-BINDING DOMAIN OF FLI-1 分子名称: FLI-1 著者 Liang, H, Mao, X, Olejniczak, E.T, Nettesheim, D.G, Yu, L, Meadows, R.P, Thompson, C.B, Fesik, S.W. 登録日 1994-09-15 公開日 1995-09-15 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of the ets domain of Fli-1 when bound to DNA. Nat.Struct.Biol., 1, 1994
7VE5	C-terminal domain of VraR 分子名称: DNA-binding response regulator, MAGNESIUM ION, R1-DNA 著者 Kumar, J.V, Chen, C, Hsu, C.H. 登録日 2021-09-08 公開日 2022-05-18 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural insights into DNA binding domain of vancomycin-resistance-associated response regulator in complex with its promoter DNA from Staphylococcus aureus. Protein Sci., 31, 2022
5HR9	The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1 分子名称: DNA (5'-D(*GP*GP*AP*CP*AP*AP*CP*GP*GP*GP*AP*CP*AP*AP*C)-3'), DNA (5'-D(*GP*TP*TP*GP*TP*CP*C)-3'), DNA polymerase beta-like protein 著者 Chen, Y.Q, Zhang, J, Gan, J.H. 登録日 2016-01-23 公開日 2017-01-18 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1 To Be Published
3D1F	Crystal structure of E. coli sliding clamp (beta) bound to a polymerase III peptide 分子名称: 2-[3,6-bis(dimethylamino)xanthen-9-yl]-5-methanoyl-benzoate, DI(HYDROXYETHYL)ETHER, DNA polymerase III subunit beta, ... 著者 Georgescu, R.E, Yurieva, O, Seung-Sup, K, Kuriyan, J, Kong, X.-P, O'Donnell, M. 登録日 2008-05-05 公開日 2008-07-29 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of a small-molecule inhibitor of a DNA polymerase sliding clamp. Proc.Natl.Acad.Sci.Usa, 105, 2008
4YO2	Structure of E2F8, an atypical member of E2F family of transcription factors 分子名称: DNA (5'-D(P*TP*TP*TP*TP*CP*CP*CP*GP*CP*CP*AP*AP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*GP*GP*CP*GP*GP*GP*AP*AP*AP*A)-3'), Transcription factor E2F8 著者 Morgunova, E, Yin, Y, Jolma, A, Dave, K, Schmierer, B, Popov, A, Eremina, N, Nilsson, L, Taipale, J. 登録日 2015-03-11 公開日 2015-12-09 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.073 Å) 主引用文献 Structural insights into the DNA-binding specificity of E2F family transcription factors. Nat Commun, 6, 2015
4R28	MspJI Restriction Endonuclease in Complex with 27-mer Oligonucleotide 分子名称: DNA (25-MER), DNA (26-MER), Restriction endonuclease 著者 Horton, J.R, Cheng, X. 登録日 2014-08-10 公開日 2014-10-08 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.055 Å) 主引用文献 Modification-dependent restriction endonuclease, MspJI, flips 5-methylcytosine out of the DNA helix. Nucleic Acids Res., 42, 2014
4RKI	Crystal structure of sliding beta clamp from Helicobacter pylori 分子名称: DNA polymerase III subunit beta 著者 Satyawali, P, Tarique, K.F, Abdul Rehman, S.A, Gourinath, S. 登録日 2014-10-13 公開日 2016-01-13 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structural insight into beta-Clamp and its interaction with DNA Ligase in Helicobacter pylori. Sci Rep, 6, 2016
4FX4	Crystal structure of M. tuberculosis transcriptional regulator MOSR (Rv1049) in compex with DNA 分子名称: DNA (5'-D(*TP*AP*CP*AP*GP*AP*TP*TP*CP*GP*TP*GP*TP*AP*GP*CP*TP*AP*CP*AP*CP*GP*AP*AP*TP*CP*TP*GP*T)-3'), PHOSPHATE ION, PROBABLE TRANSCRIPTIONAL REPRESSOR PROTEIN 著者 Brugarolas, P, He, C. 登録日 2012-07-02 公開日 2012-09-26 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (3.1001 Å) 主引用文献 The Oxidation-sensing Regulator (MosR) Is a New Redox-dependent Transcription Factor in Mycobacterium tuberculosis. J.Biol.Chem., 287, 2012
5HRE	The crystal structure of AsfvPolX:DNA3 binary complex 分子名称: DNA (5'-D(P*AP*GP*GP*AP*TP*CP*CP*T)-3'), DNA polymerase beta-like protein, FORMIC ACID, ... 著者 Chen, Y.Q, Zhang, J, Gan, J.H. 登録日 2016-01-23 公開日 2017-01-18 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1 To Be Published
3ZQL	DNA-bound form of TetR-like repressor SimR 分子名称: 5'-D(*DTP*TP*CP*GP*TP*AP*CP*GP*CP*CP*GP*TP*AP*DCP *GP*AP*A)-3', 5'-D(*DTP*TP*CP*GP*TP*AP*CP*GP*GP*CP*GP*TP*AP*DCP *GP*AP*A)-3', PUTATIVE REPRESSOR SIMREG2 著者 Le, T.B.K, Schumacher, M.A, Lawson, D.M, Brennan, R.G, Buttner, M.J. 登録日 2011-06-10 公開日 2011-08-31 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.99 Å) 主引用文献 The Crystal Structure of the Tetr Family Transcriptional Repressor Simr Bound to DNA and the Role of a Flexible N-Terminal Extension in Minor Groove Binding. Nucleic Acids Res., 39, 2011

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