PDB: 46169 件ウェブページステータス検索Chemie searchBIRD

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7UV7	Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and scaffold duplex (21mer) containing the cognate REPE54 sequence and an insert duplex (10mer) with guest TAMRA-labelled thymine and T-A rich sequence. 分子名称: DNA (5'-D(*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*A)-3'), DNA (5'-D(*GP*AP*CP*GP*GP*TP*AP*AP*TP*T)-3'), DNA (5'-D(*GP*T(TAMRA)P*AP*AP*TP*TP*AP*CP*CP*G)-3'), ... 著者 Orun, A.R, Snow, C.D. 登録日 2022-04-29 公開日 2023-05-17 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (3.02 Å) 主引用文献 Modular Protein-DNA Cocrystals as Precise, Programmable Assembly Scaffolds. Acs Nano, 17, 2023
7UV6	Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and scaffold duplex (21mer) containing the cognate REPE54 sequence and an insert duplex (10mer) with guest TAMRA-labelled thymine and G-C rich sequence. 分子名称: DNA (5'-D(*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*A)-3'), DNA (5'-D(*GP*AP*CP*GP*GP*CP*CP*CP*GP*G)-3'), DNA (5'-D(*GP*T(TAMRA)P*CP*CP*GP*GP*GP*CP*CP*G)-3'), ... 著者 Orun, A.R, Snow, C.D. 登録日 2022-04-29 公開日 2023-05-03 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.72 Å) 主引用文献 Modular Protein-DNA Cocrystals as Precise, Programmable Assembly Scaffolds. Acs Nano, 17, 2023
7UXY	Isoreticular, interpenetrating co-crystal of protein variant Replication Initiator Protein REPE54 (L53G,Q54G,E55G) and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence. 分子名称: DNA (5'-D(A*CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*P*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*AP*CP*GP*G)-3'), DNA (5'-D(A*GP*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*P*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*TP*CP*CP*GP*G)-3'), MAGNESIUM ION, ... 著者 Orun, A.R, Snow, C.D. 登録日 2022-05-06 公開日 2023-05-17 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Modular Protein-DNA Cocrystals as Precise, Programmable Assembly Scaffolds. Acs Nano, 17, 2023
7UFX	Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and scaffold-insert duplexes (21mer and 10mer) containing the cognate REPE54 sequence and an additional G-C rich sequence, respectively. 分子名称: DNA (5'-D(A*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*A)-3'), DNA (5'-D(A*GP*AP*CP*GP*GP*CP*CP*CP*GP*G)-3'), DNA (5'-D(A*GP*TP*CP*CP*GP*GP*GP*CP*CP*G)-3'), ... 著者 Ward, A.R, Shields, E.T, Snow, C.D. 登録日 2022-03-23 公開日 2023-03-29 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Modular Protein-DNA Cocrystals as Precise, Programmable Assembly Scaffolds. Acs Nano, 17, 2023
9BH9	Human DNA polymerase theta helicase domain dimer bound to DNA in the microhomology aligning conformation 分子名称: DNA polymerase theta, Stem-loop DNA with microhomology in the 3' overhang 著者 Zerio, C.J, Lander, G.C. 登録日 2024-04-19 公開日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Human polymerase theta helicase positions DNA microhomologies for double-strand break repair To Be Published
9BHA	Human DNA polymerase theta helicase domain dimer bound to DNA in the microhomology annealed conformation 分子名称: DNA polymerase theta, Stem-loop DNA with microhomology in the 3' overhang 著者 Zerio, C.J, Lander, G.C. 登録日 2024-04-19 公開日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Human polymerase theta helicase positions DNA microhomologies for double-strand break repair To Be Published
2WTY	Crystal structure of the homodimeric MafB in complex with the T-MARE binding site 分子名称: DNA (5'-D(*TP*AP*AP*TP*TP*GP*CP*TP*GP*AP*CP*TP*CP*AP *GP*CP*AP*AP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*TP*TP*GP*CP*TP*GP*AP*GP*TP*CP*AP *GP*CP*AP*AP*TP*T)-3'), MAGNESIUM ION, ... 著者 Consani Textor, L, Holton, S, Wilmanns, M. 登録日 2009-09-25 公開日 2010-12-08 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Design of a bZIP Transcription Factor with Homo/Heterodimer-Induced DNA-Binding Preference. Structure, 22, 2014
3EI4	Structure of the hsDDB1-hsDDB2 complex 分子名称: DNA damage-binding protein 1, DNA damage-binding protein 2 著者 Scrima, A, Pavletich, N.P, Thoma, N.H. 登録日 2008-09-15 公開日 2009-01-20 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex. Cell(Cambridge,Mass.), 135, 2008
6KYX	Crystal Structure of Staphylococcus aureus response regulator ArlR DNA binding domain with His tag cleaved 分子名称: DNA-binding response regulator ArlR 著者 Wen, Y, Ouyang, Z. 登録日 2019-09-20 公開日 2020-09-23 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.0048 Å) 主引用文献 Crystal Structure of Staphylococcus aureus response regulator ArlR DNA binding domain To Be Published
7U6K	Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence. 分子名称: DNA (5'-D(A*CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*AP*CP*GP*G)-3'), DNA (5'-D(A*GP*GP*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*TP*CP*CP*G)-3'), MAGNESIUM ION, ... 著者 Ward, A.R, Snow, C.D. 登録日 2022-03-04 公開日 2023-03-29 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.38 Å) 主引用文献 Modular Protein-DNA Cocrystals as Precise, Programmable Assembly Scaffolds. Acs Nano, 17, 2023
7SGC	Replication Initiator Protein REPE54 and cognate DNA sequence with terminal five prime phosphates. 分子名称: DNA (5'-D(P*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*G)-3'), DNA (5'-D(P*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*G)-3'), MAGNESIUM ION, ... 著者 Ward, A.R, Snow, C.D. 登録日 2021-10-05 公開日 2021-10-13 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Stabilizing DNA-Protein Co-Crystals via Intra-Crystal Chemical Ligation of the DNA Crystals, 12, 2022
5EXR	Crystal structure of human primosome 分子名称: DNA polymerase alpha catalytic subunit, DNA polymerase alpha subunit B, DNA primase large subunit, ... 著者 Tahirov, T.H, Baranovskiy, A.G, Babayeva, N.D. 登録日 2015-11-24 公開日 2016-03-23 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Mechanism of Concerted RNA-DNA Primer Synthesis by the Human Primosome. J.Biol.Chem., 291, 2016
4HF2	Crystal Structure of E43A IscR mutant bound to its promoter 分子名称: DNA (29-MER), HTH-type transcriptional regulator IscR 著者 Rajagopalan, S.R, Phillips, K.J. 登録日 2012-10-04 公開日 2013-05-08 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.99 Å) 主引用文献 Studies of IscR reveal a unique mechanism for metal-dependent regulation of DNA binding specificity. Nat.Struct.Mol.Biol., 20, 2013
8HIG	Co-crystal structure of C-terminal DNA binding domain of Saccharopolyspora erythraea GlnR in complex with its cognate promoter DNA 分子名称: DNA (5'-D(*AP*CP*GP*TP*AP*AP*CP*AP*TP*CP*GP*CP*GP*GP*TP*AP*AP*CP*AP*C)-3'), DNA (5'-D(*GP*TP*GP*TP*TP*AP*CP*CP*GP*CP*GP*AP*TP*GP*TP*TP*AP*CP*GP*T)-3'), DNA-binding response OmpR family regulator 著者 Lin, W, Xu, J.C, Zhang, Y. 登録日 2022-11-20 公開日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.329 Å) 主引用文献 Co-crystal structure of C-terminal DNA binding domain of Saccharopolyspora erythraea GlnR in complex with its cognate promoter DNA To Be Published
4RKH	Structure of the MSL2 CXC domain bound with a specific MRE sequence 分子名称: DNA (5'-D(*AP*TP*CP*CP*AP*TP*CP*TP*CP*GP*CP*TP*CP*AP*T)-3'), DNA (5'-D(*AP*TP*GP*AP*GP*CP*GP*AP*GP*AP*TP*GP*GP*AP*T)-3'), E3 ubiquitin-protein ligase msl-2, ... 著者 Zheng, S, Ye, K. 登録日 2014-10-13 公開日 2015-01-21 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural basis of X chromosome DNA recognition by the MSL2 CXC domain during Drosophila dosage compensation. Genes Dev., 28, 2014
4U7B	Crystal structure of a pre-cleavage Mos1 transpososome 分子名称: DNA (25-MER), DNA (31-MER), Mariner Mos1 transposase, ... 著者 Richardson, J.M. 登録日 2014-07-30 公開日 2015-02-11 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.09 Å) 主引用文献 Structural role of the flanking DNA in mariner transposon excision. Nucleic Acids Res., 43, 2015
5J2Y	Molecular insight into the regulatory mechanism of the quorum-sensing repressor RsaL in Pseudomonas aeruginosa 分子名称: DNA (26-MER), Regulatory protein 著者 Zhao, J, Gan, J, Zhang, J, Kang, H, Kong, W, Zhu, M, Li, F, Song, Y, Qin, J, Liang, H. 登録日 2016-03-30 公開日 2017-04-12 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structure of Pseudomonas aeruginosa RsaL bound to promoter DNA reaffirms its role as a global regulator involved in quorum-sensing. Nucleic Acids Res., 45, 2017
4HF1	Crystal Structure of IscR bound to its promoter 分子名称: DNA (29-MER), HTH-type transcriptional regulator IscR 著者 Rajagopalan, S.R, Phillips, K.J. 登録日 2012-10-04 公開日 2013-05-08 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.222 Å) 主引用文献 Studies of IscR reveal a unique mechanism for metal-dependent regulation of DNA binding specificity. Nat.Struct.Mol.Biol., 20, 2013
3EI3	Structure of the hsDDB1-drDDB2 complex 分子名称: DNA damage-binding protein 1, DNA damage-binding protein 2, TETRAETHYLENE GLYCOL 著者 Scrima, A, Thoma, N.H. 登録日 2008-09-15 公開日 2009-01-20 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex. Cell(Cambridge,Mass.), 135, 2008
6R9B	Cryo-EM structure of bacterial RNAP with a DNA mimic protein Ocr from T7 phage 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Ye, F.Z, Zhang, X.D. 登録日 2019-04-03 公開日 2020-02-26 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structural basis of transcription inhibition by the DNA mimic protein Ocr of bacteriophage T7 Elife, 2020
4WO3	THE SECOND C-KIT DNA QUADRUPLEX CRYSTAL STRUCTURE 分子名称: DNA (5'-D(*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*CP*TP*GP*GP*GP*AP*GP*GP*AP*GP*GP*G)-3'), POTASSIUM ION 著者 Wei, D, Neidle, S. 登録日 2014-10-15 公開日 2014-10-29 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.73 Å) 主引用文献 THE SECOND C-KIT1 DNA QUADRUPLEX CRYSTAL STRUCTURE TO BE PUBLISHED
7U50	APE1 bound to a nucleosome core particle with AP-site at SHL-6 分子名称: DNA (144-MER), DNA (145-MER), DNA-(apurinic or apyrimidinic site) endonuclease, ... 著者 Weaver, T.M, Freudenthal, B.D. 登録日 2022-03-01 公開日 2022-09-07 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structural basis for APE1 processing DNA damage in the nucleosome. Nat Commun, 13, 2022
3A2F	Crystal Structure of Pyrococcus furiosus DNA polymerase/PCNA monomer mutant complex 分子名称: DNA polymerase, DNA polymerase sliding clamp 著者 Nishida, H, Ishino, Y, Morikawa, K. 登録日 2009-05-15 公開日 2009-11-03 最終更新日 2021-11-10 実験手法 X-RAY DIFFRACTION (2.67 Å) 主引用文献 Structural determinant for switching between the polymerase and exonuclease modes in the PCNA-replicative DNA polymerase complex To be Published
7WB3	Crystal structure of T. maritima Rex in ternary complex 分子名称: DNA (5'-D(*AP*TP*TP*TP*GP*AP*GP*AP*AP*AP*TP*TP*TP*AP*TP*CP*AP*CP*AP*AP*AP*A)-3'), DNA (5'-D(*TP*TP*TP*TP*GP*TP*GP*AP*TP*AP*AP*AP*TP*TP*TP*CP*TP*CP*AP*AP*AP*T)-3'), NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... 著者 Lee, J.Y, Jeong, K.H, Lee, H.J, Park, Y.W. 登録日 2021-12-15 公開日 2022-02-16 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.401 Å) 主引用文献 Structural Basis of Redox-Sensing Transcriptional Repressor Rex with Cofactor NAD + and Operator DNA. Int J Mol Sci, 23, 2022
1CJG	NMR STRUCTURE OF LAC REPRESSOR HP62-DNA COMPLEX 分子名称: DNA (5'-D(*GP*AP*AP*TP*TP*GP*TP*GP*AP*GP*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*TP*C)-3'), PROTEIN (LAC REPRESSOR) 著者 Spronk, C.A.E.M, Bonvin, A.M.J.J, Radha, P.K, Melacini, G, Boelens, R, Kaptein, R. 登録日 1999-04-14 公開日 2000-01-01 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 The solution structure of Lac repressor headpiece 62 complexed to a symmetrical lac operator. Structure Fold.Des., 7, 1999

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