PDB: 8627 件ウェブページステータス検索Chemie searchBIRD

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3S17	RNA Polymerase II Initiation Complex with a 9-nt RNA 分子名称: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-14 公開日 2011-08-10 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011
3RZD	RNA Polymerase II Initiation Complex with a 5-nt RNA 分子名称: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-11 公開日 2011-08-10 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011
3RZO	RNA Polymerase II Initiation Complex with a 4-nt RNA 分子名称: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-12 公開日 2011-08-10 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011
3S1R	RNA Polymerase II Initiation Complex with a 5-nt 3'-deoxy RNA soaked with GTP 分子名称: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-16 公開日 2011-08-10 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011
3S16	RNA Polymerase II Initiation Complex with an 8-nt RNA 分子名称: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-14 公開日 2011-08-10 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.241 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011
3S14	RNA Polymerase II Initiation Complex with a 6-nt RNA 分子名称: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-14 公開日 2011-08-10 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011
3S1N	RNA Polymerase II Initiation Complex with a 5-nt RNA (variant 2) 分子名称: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*GP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-15 公開日 2011-08-10 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011
3S2D	RNA Polymerase II Initiation Complex with a 5-nt RNA containing a 5Br-U 分子名称: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*AP*CP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-16 公開日 2011-08-10 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011
3S1Q	RNA Polymerase II Initiation Complex with a 5-nt 3'-deoxy RNA soaked with ATP 分子名称: ADENOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-16 公開日 2011-08-10 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011
3S15	RNA Polymerase II Initiation Complex with a 7-nt RNA 分子名称: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-14 公開日 2011-08-10 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011
3S2H	RNA Polymerase II Initiation Complex with a 6-nt RNA containing a 2[prime]-iodo ATP 分子名称: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-16 公開日 2011-08-17 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011
3S1M	RNA Polymerase II Initiation Complex with a 5-nt RNA (variant 1) 分子名称: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*GP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-15 公開日 2011-08-10 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.13 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011
6WOX	Thermus thermophilus RNA polymerase initially transcribing complex with 2'dCTP 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (25-MER), DNA (5'-D(P*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*GP*CP*AP*G)-3'), ... 著者 Shin, Y, Murakami, K.S. 登録日 2020-04-26 公開日 2020-06-10 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.14 Å) 主引用文献 The mechanism of the nucleo-sugar selection by multi-subunit RNA polymerases. Nat Commun, 12, 2021
6WOY	Thermus thermophilus RNA polymerase initially transcribing complex with 3'dCTP 分子名称: 3'-DEOXY-CYTIDINE-5'-TRIPHOSPHATE, DNA (25-MER), DNA (5'-D(P*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*GP*CP*AP*G)-3'), ... 著者 Shin, Y, Murakami, K.S. 登録日 2020-04-26 公開日 2020-06-10 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The mechanism of the nucleo-sugar selection by multi-subunit RNA polymerases. Nat Commun, 12, 2021
2R7Z	Cisplatin lesion containing RNA polymerase II elongation complex 分子名称: 5'-D(*CP*AP*AP*GP*TP*AP*G)-3', 5'-D(*TP*AP*CP*TP*TP*GUP*CP*CP*CP*TP*CP*CP*TP*CP*AP*T)-3', 5'-R(*UP*UP*UP*GP*AP*GP*GP*AP*GP*G)-3', ... 著者 Damsma, G.E, Alt, A, Brueckner, F, Carell, T, Cramer, P. 登録日 2007-09-10 公開日 2007-11-20 最終更新日 2017-10-25 実験手法 X-RAY DIFFRACTION (3.8 Å) 主引用文献 Mechanism of transcriptional stalling at cisplatin-damaged DNA. Nat.Struct.Mol.Biol., 14, 2007
2NVX	RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTP 分子名称: 28-MER DNA template strand, 5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3', 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3', ... 著者 Wang, D, Bushnell, D.A, Westover, K.D, Kaplan, C.D, Kornberg, R.D. 登録日 2006-11-13 公開日 2006-12-19 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis Cell(Cambridge,Mass.), 127, 2006
2NVT	RNA Polymerase II Elongation Complex in 150 mM Mg+2 with GMPCPP 分子名称: 5'-D(*GP*TP*AP*CP*TP*TP*G)-3', 5'-D(P*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP*CP*GP*CP*CP*TP*GP*GP*TP*CP*TP*T)-3', 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3', ... 著者 Wang, D, Bushnell, D.A, Westover, K.D, Kaplan, C.D, Kornberg, R.D. 登録日 2006-11-13 公開日 2006-12-12 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.36 Å) 主引用文献 Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis Cell(Cambridge,Mass.), 127, 2006
2NVZ	RNA Polymerase II elongation complex with UTP, updated 11/2006 分子名称: 28-MER DNA template strand, 5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3', 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3', ... 著者 Wang, D, Bushnell, D.A, Westover, K.D, Kaplan, C.D, Kornberg, R.D. 登録日 2006-11-14 公開日 2006-12-19 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (4.3 Å) 主引用文献 Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis Cell(Cambridge,Mass.), 127, 2006
2NVQ	RNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTP 分子名称: 28-MER DNA template strand, 5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3', 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3', ... 著者 Wang, D, Bushnell, D.A, Westover, K.D, Kaplan, C.D, Kornberg, R.D. 登録日 2006-11-13 公開日 2006-12-12 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis Cell(Cambridge,Mass.), 127, 2006
2F8E	Foot and Mouth Disease Virus RNA-dependent RNA polymerase in complex with uridylylated VPg protein 分子名称: MAGNESIUM ION, MANGANESE (II) ION, RNA-dependent RNA polymerase, ... 著者 Ferrer-Orta, C, Arias, A, Perez-Luque, R, Escarmis, C, Domingo, E, Verdaguer, N. 登録日 2005-12-02 公開日 2006-03-28 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 The structure of a protein primer-polymerase complex in the initiation of genome replication Embo J., 25, 2006
6YYS	Structure of Mycobacterium smegmatis HelD protein in complex with RNA polymerase core - State II, primary channel engaged and active site interfering 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Kouba, T, Koval, T, Krasny, L, Dohnalek, J. 登録日 2020-05-05 公開日 2020-11-04 最終更新日 2021-09-29 実験手法 ELECTRON MICROSCOPY (3.08 Å) 主引用文献 Mycobacterial HelD is a nucleic acids-clearing factor for RNA polymerase. Nat Commun, 11, 2020
6F5P	A mechanism for the activation of the influenza virus transcriptase 分子名称: ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA, DNA-directed RNA polymerase subunit, MAGNESIUM ION, ... 著者 Serna Martin, I, Grimes, J.M. 登録日 2017-12-02 公開日 2018-09-19 実験手法 X-RAY DIFFRACTION (4.14 Å) 主引用文献 A Mechanism for the Activation of the Influenza Virus Transcriptase. Mol. Cell, 70, 2018
6F5O	A mechanism for the activation of the influenza virus transcriptase 分子名称: 3' promoter vRNA, 5' promoter vRNA, Polymerase acidic protein, ... 著者 Serna Martin, I, Grimes, J.M. 登録日 2017-12-02 公開日 2018-06-27 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (9.8 Å) 主引用文献 A Mechanism for the Activation of the Influenza Virus Transcriptase. Mol. Cell, 70, 2018
1HHS	RNA dependent RNA polymerase from dsRNA bacteriophage phi6 分子名称: MANGANESE (II) ION, RNA-DIRECTED RNA POLYMERASE 著者 Grimes, J.M, Butcher, S.J, Makeyev, E.V, Bamford, D.H, Stuart, D.I. 登録日 2000-12-28 公開日 2001-03-27 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 A Mechanism for Initiating RNA-Dependent RNA Polymerization Nature, 410, 2001
7F0S	A crystal structure of alphavirus nonstructural protein 4 (nsP4) reveals an intrinsically 1dynamic RNA-dependent RNA polymerase 分子名称: RNA-directed RNA polymerase nsP4 著者 Tan, Y.B, Luo, D. 登録日 2021-06-06 公開日 2022-02-16 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structures of alphavirus nonstructural protein 4 (nsP4) reveal an intrinsically dynamic RNA-dependent RNA polymerase fold. Nucleic Acids Res., 50, 2022

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