PDB: 85 件ウェブページステータス検索Chemie searchBIRD

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4LD9	Crystal structure of the N-terminally acetylated BAH domain of Sir3 bound to the nucleosome core particle 分子名称: Histone H2A, Histone H2B 1.1, Histone H3.2, ... 著者 Arnaudo, N, Fernandez, I.S, McLaughlin, S.H, Peak-Chew, S.Y, Rhodes, D, Martino, F. 登録日 2013-06-24 公開日 2013-08-14 最終更新日 2013-09-18 実験手法 X-RAY DIFFRACTION (3.306 Å) 主引用文献 The N-terminal acetylation of Sir3 stabilizes its binding to the nucleosome core particle. Nat.Struct.Mol.Biol., 20, 2013
4WXX	The crystal structure of human DNMT1(351-1600) 分子名称: DNA (cytosine-5)-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION 著者 Zhang, Z.M, Song, J. 登録日 2014-11-14 公開日 2015-07-15 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.622 Å) 主引用文献 Crystal Structure of Human DNA Methyltransferase 1. J.Mol.Biol., 427, 2015
4YOC	Crystal Structure of human DNMT1 and USP7/HAUSP complex 分子名称: DNA (cytosine-5)-methyltransferase 1, Ubiquitin carboxyl-terminal hydrolase 7, ZINC ION 著者 Cheng, J, Yang, H, Fang, J, Gong, R, Wang, P, Li, Z, Xu, Y. 登録日 2015-03-11 公開日 2015-05-27 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.916 Å) 主引用文献 Molecular mechanism for USP7-mediated DNMT1 stabilization by acetylation. Nat Commun, 6, 2015
5GUT	The crystal structure of mouse DNMT1 (731-1602) mutant - N1248A 分子名称: DNA (cytosine-5)-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION, ... 著者 Chen, S.J, Ye, F. 登録日 2016-08-31 公開日 2017-09-06 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.099 Å) 主引用文献 Biochemical Studies and Molecular Dynamic Simulations Reveal the Molecular Basis of Conformational Changes in DNA Methyltransferase-1. ACS Chem. Biol., 13, 2018
5GUV	The crystal structure of mouse DNMT1 (731-1602) mutant - R1279D 分子名称: DNA (cytosine-5)-methyltransferase 1, ZINC ION 著者 Ye, F, Chen, S.J. 登録日 2016-08-31 公開日 2017-08-30 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.078 Å) 主引用文献 Biochemical Studies and Molecular Dynamic Simulations Reveal the Molecular Basis of Conformational Changes in DNA Methyltransferase-1. ACS Chem. Biol., 13, 2018
5HH7	crystal structure of Arabidopsis ORC1b BAH-PHD cassette in complex with unmodified H3 peptide 分子名称: Histone H3 1-15 peptide, Origin of replication complex subunit 1B, ZINC ION 著者 Li, S, Du, J. 登録日 2016-01-10 公開日 2016-03-09 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.901 Å) 主引用文献 Structural Basis for the Unique Multivalent Readout of Unmodified H3 Tail by Arabidopsis ORC1b BAH-PHD Cassette Structure, 24, 2016
5V8F	Structural basis of MCM2-7 replicative helicase loading by ORC-Cdc6 and Cdt1 分子名称: Cell division control protein 6, Cell division cycle protein CDT1, DNA (39-MER), ... 著者 Yuan, Z, Riera, A, Bai, L, Sun, J, Spanos, C, Chen, Z.A, Barbon, M, Rappsilber, J, Stillman, B, Speck, C, Li, H. 登録日 2017-03-21 公開日 2017-05-10 最終更新日 2020-04-22 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structural basis of Mcm2-7 replicative helicase loading by ORC-Cdc6 and Cdt1. Nat. Struct. Mol. Biol., 24, 2017
5WY1	Crystal structure of mouse DNA methyltransferase 1 (T1505A mutant) 分子名称: DNA (cytosine-5)-methyltransferase 1, ZINC ION 著者 Kanada, K, Takeshita, K, Suetake, I, Tajima, S, Nakagawa, A. 登録日 2017-01-10 公開日 2017-05-24 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.27 Å) 主引用文献 Conserved threonine 1505 in the catalytic domain stabilizes mouse DNA methyltransferase 1 J. Biochem., 162, 2017
5Z8L	crystal structure of Arabidopsis thaliana EBS in complex with an H3K27me3 peptide 分子名称: Chromatin remodeling protein EBS, H3K27me3 peptide, ZINC ION 著者 Yang, Z, Du, J. 登録日 2018-01-31 公開日 2018-07-25 最終更新日 2018-09-19 実験手法 X-RAY DIFFRACTION (2.005 Å) 主引用文献 EBS is a bivalent histone reader that regulates floral phase transition in Arabidopsis. Nat. Genet., 50, 2018
5Z8N	Crystal structure of Arabidopsis thaliana EBS C-terminal deletion construct in complex with an H3K4me2 peptide 分子名称: Chromatin remodeling protein EBS, H3K4me2 peptide, ZINC ION 著者 Yang, Z, Du, J. 登録日 2018-01-31 公開日 2018-07-25 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 EBS is a bivalent histone reader that regulates floral phase transition in Arabidopsis. Nat. Genet., 50, 2018
5ZNP	Crystal structure of PtSHL in complex with an H3K4me3 peptide 分子名称: 15-mer peptide from Histone H3.2, SHORT LIFE family protein, ZINC ION 著者 Lv, X, Du, J. 登録日 2018-04-10 公開日 2018-07-18 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Dual recognition of H3K4me3 and H3K27me3 by a plant histone reader SHL. Nat Commun, 9, 2018
5ZNR	Crystal structure of PtSHL in complex with an H3K27me3 peptide 分子名称: 17-mer peptide from Histone H3.2, SHORT LIFE family protein, SULFATE ION, ... 著者 Lv, X, Du, J. 登録日 2018-04-10 公開日 2018-07-18 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.202 Å) 主引用文献 Dual recognition of H3K4me3 and H3K27me3 by a plant histone reader SHL. Nat Commun, 9, 2018
5ZR1	Saccharomyces Cerevisiae Origin Recognition Complex Bound to a 72-bp Origin DNA containing ACS and B1 element 分子名称: 72bp-oring DNA, ACS305, A-rich, ... 著者 Li, N, Lam, W.H, Zhai, Y, Cheng, J, Cheng, E, Zhao, Y, Gao, N, Tye, B.K. 登録日 2018-04-21 公開日 2018-07-11 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structure of the origin recognition complex bound to DNA replication origin. Nature, 559, 2018
6K15	RSC substrate-recruitment module 分子名称: Chromatin structure-remodeling complex protein RSC3, Chromatin structure-remodeling complex protein RSC30, Chromatin structure-remodeling complex protein RSC58, ... 著者 Ye, Y.P, Wu, H, Chen, K.J, Verma, N, Cairns, B, Gao, N, Chen, Z.C. 登録日 2019-05-09 公開日 2019-11-13 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure of the RSC complex bound to the nucleosome. Science, 366, 2019
6KW3	The ClassA RSC-Nucleosome Complex 分子名称: Actin-like protein ARP9, Actin-related protein 7, Chromatin structure-remodeling complex protein RSC3, ... 著者 Ye, Y.P, Wu, H, Chen, K.J, Verma, N, Cairns, B, Gao, N, Chen, Z.C. 登録日 2019-09-05 公開日 2019-11-13 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (7.13 Å) 主引用文献 Structure of the RSC complex bound to the nucleosome. Science, 366, 2019
6KW4	The ClassB RSC-Nucleosome Complex 分子名称: Actin-like protein ARP9, Actin-related protein 7, Chromatin structure-remodeling complex protein RSC3, ... 著者 Ye, Y.P, Wu, H, Chen, K.J, Verma, N, Cairns, B, Gao, N, Chen, Z.C. 登録日 2019-09-06 公開日 2019-11-13 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (7.55 Å) 主引用文献 Structure of the RSC complex bound to the nucleosome. Science, 366, 2019
6KW5	The ClassC RSC-Nucleosome Complex 分子名称: Actin-like protein ARP9, Actin-related protein 7, Chromatin structure-remodeling complex protein RSC3, ... 著者 Ye, Y.P, Wu, H, Chen, K.J, Verma, N, Cairns, B, Gao, N, Chen, Z.C. 登録日 2019-09-06 公開日 2020-09-09 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (10.13 Å) 主引用文献 Structure of the RSC complex bound to the nucleosome To Be Published
6OM3	Crystal structure of the Orc1 BAH domain in complex with a nucleosome core particle 分子名称: DNA (146-MER), DNA (147-MER), Histone H2A, ... 著者 De Ioannes, P.E, Wang, M, Armache, K.-J. 登録日 2019-04-18 公開日 2019-07-10 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Structure and function of the Orc1 BAH-nucleosome complex. Nat Commun, 10, 2019
6OXB	First bromo-adjacent homology (BAH) domain of human Polybromo-1 (PBRM1) 分子名称: CHLORIDE ION, Protein polybromo-1, SULFATE ION 著者 Petojevic, T, Holliday, M.J, Fairbrother, W.J, Cochran, A.G. 登録日 2019-05-13 公開日 2020-05-20 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Polyvalent nucleosome recognition by Polybromo-1 anchors chromatin remodeling To Be Published
6RQC	Cryo-EM structure of an MCM loading intermediate 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DNA (88-MER), ... 著者 Miller, T.C.R, Locke, J, Costa, A. 登録日 2019-05-15 公開日 2019-11-20 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Mechanism of head-to-head MCM double-hexamer formation revealed by cryo-EM. Nature, 575, 2019
6V8O	RSC core 分子名称: Chromatin structure-remodeling complex protein RSC14, Chromatin structure-remodeling complex protein RSC3, Chromatin structure-remodeling complex protein RSC30, ... 著者 Patel, A.B, Moore, C.M, Greber, B.J, Nogales, E. 登録日 2019-12-11 公開日 2020-01-15 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.07 Å) 主引用文献 Architecture of the chromatin remodeler RSC and insights into its nucleosome engagement. Elife, 8, 2019
6V92	RSC-NCP 分子名称: Actin-like protein ARP9, Actin-related protein 7, Chromatin structure-remodeling complex protein RSC14, ... 著者 Patel, A.B, Moore, C.M, Greber, B.J, Nogales, E. 登録日 2019-12-13 公開日 2020-01-15 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (20 Å) 主引用文献 Architecture of the chromatin remodeler RSC and insights into its nucleosome engagement. Elife, 8, 2019
6VIL	Crystal structure of mouse BAHCC1 BAH domain in complex with H3K27me3 分子名称: BAH and coiled-coil domain-containing protein 1, Histone H3.1 著者 Song, J, Lu, J. 登録日 2020-01-13 公開日 2020-09-16 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.301 Å) 主引用文献 BAHCC1 binds H3K27me3 via a conserved BAH module to mediate gene silencing and oncogenesis. Nat.Genet., 52, 2020
6W8V	Crystal structure of mouse DNMT1 in complex with ACG DNA 分子名称: ACG DNA (5'-D(*AP*CP*TP*TP*AP*(C49)P*GP*GP*AP*AP*GP*G)-3'), ACG DNA (5'-D(*CP*CP*TP*TP*CP*(5CM)P*GP*TP*AP*AP*GP*T)-3'), DNA (cytosine-5)-methyltransferase 1, ... 著者 Anteneh, H, Song, J. 登録日 2020-03-21 公開日 2020-07-08 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.12 Å) 主引用文献 DNMT1 activity, base flipping mechanism and genome-wide DNA methylation are regulated by the DNA sequence context Nat Commun, 2020
6W8W	Crystal structure of mouse DNMT1 in complex with CCG DNA 分子名称: CCG DNA (5'-D(*AP*CP*TP*TP*AP*(5CM)P*GP*GP*AP*AP*GP*G)-3'), CCG DNA (5'-D(*CP*CP*TP*TP*CP*(C49)P*GP*TP*AP*AP*GP*T)-3'), DNA (cytosine-5)-methyltransferase 1, ... 著者 Anteneh, H, Song, J. 登録日 2020-03-21 公開日 2020-07-08 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 DNMT1 activity, base flipping mechanism and genome-wide DNA methylation are regulated by the DNA sequence context Nat Commun, 2020

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