PDB: 100 件ウェブページステータス検索Chemie searchBIRD

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2YBS	JMJD2A COMPLEXED WITH S-2-HYDROXYGLUTARATE AND HISTONE H3K36me3 PEPTIDE (30-41) 分子名称: (2S)-2-HYDROXYPENTANEDIOIC ACID, GLYCEROL, HISTONE H3.1T, ... 著者 Chowdhury, R, Schofield, C.J. 登録日 2011-03-10 公開日 2011-03-30 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.32 Å) 主引用文献 The oncometabolite 2-hydroxyglutarate inhibits histone lysine demethylases. EMBO Rep., 12, 2011
2YBP	JMJD2A COMPLEXED WITH R-2-HYDROXYGLUTARATE AND HISTONE H3K36me3 PEPTIDE (30-41) 分子名称: (2R)-2-hydroxypentanedioic acid, GLYCEROL, HISTONE H3.1T, ... 著者 Chowdhury, R, McDonough, M.A, Schofield, C.J. 登録日 2011-03-09 公開日 2011-03-30 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.02 Å) 主引用文献 The oncometabolite 2-hydroxyglutarate inhibits histone lysine demethylases. EMBO Rep., 12, 2011
5IN1	Crystal Structure of the MRG701 chromodomain 分子名称: 1,2-ETHANEDIOL, MRG701, SULFATE ION 著者 Huang, Y, Liu, Y. 登録日 2016-03-07 公開日 2017-03-01 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structural studies on MRG701 chromodomain reveal a novel dimerization interface of MRG proteins in green plants Protein Cell, 7, 2016
4BD3	Phf19 links methylated lysine 36 of histone H3 to regulation of Polycomb activity 分子名称: HISTONE H3, PHD FINGER PROTEIN 19 著者 Lapinaite, A, Simon, B, Carlomagno, T. 登録日 2012-10-04 公開日 2012-10-31 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Phf19 Links Methylated Lys36 of Histone H3 to Regulation of Polycomb Activity Nat.Struct.Mol.Biol., 19, 2012
4N4G	Crystal structure of the Bromo-PWWP of the mouse zinc finger MYND-type containing 11 isoform alpha 分子名称: PHOSPHATE ION, ZINC ION, Zinc finger MYND domain-containing protein 11 著者 Li, Y, Ren, Y, Li, H. 登録日 2013-10-08 公開日 2014-03-05 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.947 Å) 主引用文献 ZMYND11 links histone H3.3K36me3 to transcription elongation and tumour suppression Nature, 508, 2014
4N4H	Crystal structure of the Bromo-PWWP of the mouse zinc finger MYND-type containing 11 isoform alpha in complex with histone H3.1K36me3 分子名称: DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, Peptide from Histone H3.1, ... 著者 Li, Y, Ren, Y, Li, H. 登録日 2013-10-08 公開日 2014-03-05 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.302 Å) 主引用文献 ZMYND11 links histone H3.3K36me3 to transcription elongation and tumour suppression Nature, 508, 2014
4N4I	Crystal structure of the Bromo-PWWP of the mouse zinc finger MYND-type containing 11 isoform alpha in complex with histone H3.3K36me3 分子名称: DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, Peptide from Histone H3.3, ... 著者 Li, Y, Ren, Y, Li, H. 登録日 2013-10-08 公開日 2014-03-05 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.999 Å) 主引用文献 ZMYND11 links histone H3.3K36me3 to transcription elongation and tumour suppression Nature, 508, 2014
6S01	Structure of LEDGF PWWP domain bound H3K36 methylated nucleosome 分子名称: Histone H2A, Histone H2B 1.1, Histone H3, ... 著者 Wang, H, Farnung, L, Dienemann, C, Cramer, P. 登録日 2019-06-13 公開日 2019-12-18 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structure of H3K36-methylated nucleosome-PWWP complex reveals multivalent cross-gyre binding. Nat.Struct.Mol.Biol., 27, 2020
4PL6	Structure of the chromodomain of MRG2 in complex with H3K4me3 分子名称: At1g02740, H3K4me3 著者 Liu, Y.C, Huang, Y. 登録日 2014-05-16 公開日 2015-07-22 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.681 Å) 主引用文献 Regulation of arabidopsis flowering by the histone mark readers MRG1/2 via interaction with CONSTANS to modulate FT expression. Plos Genet., 10, 2014
2M16	P75/LEDGF PWWP Domain 分子名称: PC4 and SFRS1-interacting protein 著者 Crowe, B.L, Foster, M.P. 登録日 2012-11-18 公開日 2013-02-27 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural basis for high-affinity binding of LEDGF PWWP to mononucleosomes. Nucleic Acids Res., 41, 2013
7E29	Crystal Structure of Saccharomyces cerevisiae Ioc4 PWWP domain fused with MBP 分子名称: Maltose/maltodextrin-binding periplasmic protein,ISWI one complex protein 4, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose 著者 Li, J, Smolle, M, Liang, H, Liu, Y. 登録日 2021-02-05 公開日 2022-02-09 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.303 Å) 主引用文献 H3K36 methylation and DNA-binding both promote Ioc4 recruitment and Isw1b remodeler function. Nucleic Acids Res., 50, 2022
8IFG	Cryo-EM structure of the Clr6S (Clr6-HDAC) complex from S. pombe 分子名称: Chromatin modification-related protein eaf3, Cph1, Cph2, ... 著者 Zhang, H.Q, Wang, X, Wang, Y.N, Liu, S.M, Zhang, Y, Xu, K, Ji, L.T, Kornberg, R.D. 登録日 2023-02-17 公開日 2024-01-03 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Class I histone deacetylase complex: Structure and functional correlates. Proc Natl Acad Sci U S A, 120, 2023
8CBQ	structure of LEDGF/p75 PWWP domain bound to the H3K36 trimethylated dinucleosome 分子名称: Histone H2A, Histone H2B 1.1, Histone H3, ... 著者 Koutna, E, Kouba, T, Novacek, J, Veverka, V. 登録日 2023-01-25 公開日 2023-09-06 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Multivalency of nucleosome recognition by LEDGF. Nucleic Acids Res., 51, 2023
8CBN	structure of LEDGF/p75 PWWP domain bound to the H3K36 trimethylated dinucleosome 分子名称: Histone H2A, Histone H2B 1.1, Histone H3, ... 著者 Koutna, E, Kouba, T, Novacek, J, Veverka, V. 登録日 2023-01-25 公開日 2023-12-27 実験手法 ELECTRON MICROSCOPY (3.34 Å) 主引用文献 Multivalency of nucleosome recognition by LEDGF. Nucleic Acids Res., 51, 2023
8HXY	Cryo-EM structure of the histone deacetylase complex Rpd3S in complex with nucleosome 分子名称: Chromatin modification-related protein EAF3, DNA (352-MER), Histone H2A, ... 著者 Cui, H, Wang, H. 登録日 2023-01-05 公開日 2023-09-27 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structure of histone deacetylase complex Rpd3S bound to nucleosome. Nat.Struct.Mol.Biol., 30, 2023
8JHO	Cryo-EM structure of the histone deacetylase complex Rpd3S in complex with di-nucleosome 分子名称: Chromatin modification-related protein EAF3, Di-nucleosome template foward, Di-nucleosome template reverse, ... 著者 Wang, H. 登録日 2023-05-25 公開日 2023-09-27 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (7.6 Å) 主引用文献 Structure of histone deacetylase complex Rpd3S bound to nucleosome. Nat.Struct.Mol.Biol., 30, 2023
8HXZ	Cryo-EM structure of Eaf3 CHD in complex with nucleosome 分子名称: Chromatin modification-related protein EAF3, DNA (352-MER), Histone H2A, ... 著者 Cui, H, Wang, H. 登録日 2023-01-05 公開日 2023-09-27 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure of histone deacetylase complex Rpd3S bound to nucleosome. Nat.Struct.Mol.Biol., 30, 2023
8HY0	Composite cryo-EM structure of the histone deacetylase complex Rpd3S in complex with nucleosome 分子名称: Chromatin modification-related protein EAF3, DNA (352-MER), Histone H2A, ... 著者 Cui, H, Wang, H. 登録日 2023-01-05 公開日 2023-09-27 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structure of histone deacetylase complex Rpd3S bound to nucleosome. Nat.Struct.Mol.Biol., 30, 2023
8HXX	Cryo-EM structure of the histone deacetylase complex Rpd3S 分子名称: Chromatin modification-related protein EAF3, Histone H3, Histone deacetylase RPD3, ... 著者 Cui, H, Wang, H. 登録日 2023-01-05 公開日 2023-09-27 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structure of histone deacetylase complex Rpd3S bound to nucleosome. Nat.Struct.Mol.Biol., 30, 2023
4HON	Crystal structure of human JMJD2D/KDM4D in complex with an H3K9me3 peptide and 2-oxoglutarate 分子名称: 1,3-PROPANDIOL, 2-OXOGLUTARIC ACID, Histone H3 Peptide, ... 著者 Krishnan, S, Trievel, R.C. 登録日 2012-10-22 公開日 2012-11-21 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.799 Å) 主引用文献 Structural and Functional Analysis of JMJD2D Reveals Molecular Basis for Site-Specific Demethylation among JMJD2 Demethylases. Structure, 21, 2013
4HOO	Crystal structure of human JMJD2D/KDM4D apoenzyme 分子名称: ACETATE ION, Lysine-specific demethylase 4D, NICKEL (II) ION, ... 著者 Krishnan, S, Trievel, R.C. 登録日 2012-10-22 公開日 2012-11-21 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.495 Å) 主引用文献 Structural and Functional Analysis of JMJD2D Reveals Molecular Basis for Site-Specific Demethylation among JMJD2 Demethylases. Structure, 21, 2013
4A7J	Symmetric Dimethylation of H3 Arginine 2 is a Novel Histone Mark that Supports Euchromatin Maintenance 分子名称: HISTONE H3.1T, WD REPEAT-CONTAINING PROTEIN 5 著者 Migliori, V, Muller, J, Phalke, S, Low, D, Bezzi, M, ChuenMok, W, Gunaratne, J, Capasso, P, Bassi, C, Cecatiello, V, DeMarco, A, Blackstock, W, Kuznetsov, V, Amati, B, Mapelli, M, Guccione, E. 登録日 2011-11-14 公開日 2012-01-11 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Symmetric Dimethylation of H3R2 is a Newly Identified Histone Mark that Supports Euchromatin Maintenance Nat.Struct.Mol.Biol., 19, 2012
4AI9	JMJD2A Complexed with Daminozide 分子名称: CHLORIDE ION, DAMINOZIDE, GLYCEROL, ... 著者 Chowdhury, R, Schofield, C.J. 登録日 2012-02-08 公開日 2012-10-03 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Plant growth regulator daminozide is a selective inhibitor of human KDM2/7 histone demethylases. J. Med. Chem., 55, 2012
6WAU	Complex structure of PHF19 分子名称: Histone H3.1t peptide, PHD finger protein 19, UNKNOWN ATOM OR ION 著者 Dong, C, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Min, J.R, Structural Genomics Consortium (SGC) 登録日 2020-03-26 公開日 2020-08-26 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structural basis for histone variant H3tK27me3 recognition by PHF1 and PHF19. Elife, 9, 2020
6WAT	complex structure of PHF1 分子名称: Histone H3.1t peptide, PHD finger protein 1, UNKNOWN ATOM OR ION 著者 Dong, C, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Min, J.R, Structural Genomics Consortium (SGC) 登録日 2020-03-26 公開日 2020-08-26 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural basis for histone variant H3tK27me3 recognition by PHF1 and PHF19. Elife, 9, 2020

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