Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4YQX
DownloadVisualize
BU of 4yqx by Molmil
Mouse IL-2 Bound to JES6-1 scFv Fragment
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Interleukin-2, JES6-1 VH domain, ...
著者Spangler, J.B, Luca, V.C, Jude, K.M, Garcia, K.C.
登録日2015-03-13
公開日2015-07-01
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.826 Å)
主引用文献Antibodies to Interleukin-2 Elicit Selective T Cell Subset Potentiation through Distinct Conformational Mechanisms.
Immunity, 42, 2015
7Z6R
DownloadVisualize
BU of 7z6r by Molmil
Psychrobacter arcticus ATPPRT (HisGZ) R56A mutant bound to ATP and PRPP
分子名称: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, ADENOSINE-5'-TRIPHOSPHATE, ATP phosphoribosyltransferase, ...
著者Alphey, M.S, Fisher, G, da Silva, R.G.
登録日2022-03-14
公開日2022-03-23
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Allosteric rescue of catalytically impaired ATP phosphoribosyltransferase variants links protein dynamics to active-site electrostatic preorganisation.
Nat Commun, 13, 2022
8RRT
DownloadVisualize
BU of 8rrt by Molmil
Structure of rabbit RyR1 reconstituted into lipid liposomes in open state in complex with FKBP and Nb9657
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, CALCIUM ION, ...
著者Li, C, Efremov, R.G.
登録日2024-01-23
公開日2024-10-09
最終更新日2024-11-20
実験手法ELECTRON MICROSCOPY (4.6 Å)
主引用文献Rapid small-scale nanobody-assisted purification of ryanodine receptors for cryo-EM.
J.Biol.Chem., 300, 2024
8XOK
DownloadVisualize
BU of 8xok by Molmil
Cryo-EM structure of human ABCC4
分子名称: 2-[2-[(1~{S},2~{S},4~{S},5'~{R},6~{R},7~{S},8~{R},9~{S},12~{S},13~{R},16~{S})-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icos-18-ene-6,2'-oxane]-16-yl]oxyethyl]propane-1,3-diol, ATP-binding cassette sub-family C member 4, PALMITIC ACID
著者Zhang, P.F, Liu, Z.
登録日2024-01-01
公開日2024-07-24
最終更新日2024-09-04
実験手法ELECTRON MICROSCOPY (2.84 Å)
主引用文献The ATP-bound inward-open conformation of ABCC4 reveals asymmetric ATP binding for substrate transport.
Febs Lett., 598, 2024
8RRU
DownloadVisualize
BU of 8rru by Molmil
Structure of RyR1 reconstituted into lipid liposomes in primed state in complex with FKBP and Nb9657.
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, CALCIUM ION, ...
著者Li, C, Efremov, R.G.
登録日2024-01-23
公開日2024-10-09
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (4.7 Å)
主引用文献Rapid small-scale nanobody-assisted purification of ryanodine receptors for cryo-EM.
J.Biol.Chem., 300, 2024
7TQO
DownloadVisualize
BU of 7tqo by Molmil
Structure of human TREX1
分子名称: Three-prime repair exonuclease 1
著者Zhou, W, Richmond-Buccola, D, Kranzusch, P.J.
登録日2022-01-26
公開日2022-08-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Structural basis of human TREX1 DNA degradation and autoimmune disease.
Nat Commun, 13, 2022
8XOL
DownloadVisualize
BU of 8xol by Molmil
Cryo-EM structure of human ABCC4 with ANP bound in NBD1
分子名称: 2-[2-[(1~{S},2~{S},4~{S},5'~{R},6~{R},7~{S},8~{R},9~{S},12~{S},13~{R},16~{S})-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icos-18-ene-6,2'-oxane]-16-yl]oxyethyl]propane-1,3-diol, ATP-binding cassette sub-family C member 4, MAGNESIUM ION, ...
著者Zhang, P.F, Liu, Z.
登録日2024-01-01
公開日2024-07-17
最終更新日2024-09-04
実験手法ELECTRON MICROSCOPY (3.02 Å)
主引用文献The ATP-bound inward-open conformation of ABCC4 reveals asymmetric ATP binding for substrate transport.
Febs Lett., 598, 2024
5MGK
DownloadVisualize
BU of 5mgk by Molmil
Crystal Structure of BAZ2A bromodomain in complex with 4-propionyl-pyrrole derivative 2
分子名称: Bromodomain adjacent to zinc finger domain protein 2A, methyl 4-propanoyl-1~{H}-pyrrole-2-carboxylate
著者Lolli, G, Spiliotopoulos, D, Caflisch, A.
登録日2016-11-21
公開日2017-04-12
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.301 Å)
主引用文献Discovery of BAZ2A bromodomain ligands.
Eur J Med Chem, 139, 2017
8RRW
DownloadVisualize
BU of 8rrw by Molmil
Structure of RyR1 in detergent in open state in complex with FKBP and Nb9657.
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, CALCIUM ION, ...
著者Li, C, Efremov, R.G.
登録日2024-01-23
公開日2024-10-09
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Rapid small-scale nanobody-assisted purification of ryanodine receptors for cryo-EM.
J.Biol.Chem., 300, 2024
7Z8U
DownloadVisualize
BU of 7z8u by Molmil
Catalytic subunit HisG R56A mutant from Psychrobacter arcticus ATPPRT (HisGZ) in complex with ATP and PRPP
分子名称: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, ADENOSINE-5'-TRIPHOSPHATE, ATP phosphoribosyltransferase, ...
著者Alphey, M.S, Fisher, G, da Silva, R.G.
登録日2022-03-18
公開日2022-03-30
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Allosteric rescue of catalytically impaired ATP phosphoribosyltransferase variants links protein dynamics to active-site electrostatic preorganisation.
Nat Commun, 13, 2022
8JAG
DownloadVisualize
BU of 8jag by Molmil
Cryo-EM structure of SARS-CoV-1 RBD in complex with W328-6H2 (local refinement)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, H chain of 6H2 Fab region, L chain of 6H2 Fab region, ...
著者Nan, X.Y, Li, Y.J.
登録日2023-05-06
公開日2024-12-18
実験手法ELECTRON MICROSCOPY (3.55 Å)
主引用文献Cryo-EM structure of SARS-CoV-1 2p RBD in complex with W328-6H2 ( local refinement)
To Be Published
3N2P
DownloadVisualize
BU of 3n2p by Molmil
Crystal structure of human carbonic anhydrase II in complex with a benzenesulfonamide inhibitor
分子名称: 4-{[(3-nitrophenyl)carbamoyl]amino}benzenesulfonamide, Carbonic anhydrase 2, DIMETHYL SULFOXIDE, ...
著者Avvaru, B.S, Wagner, J, Robbins, A.H, McKenna, R.
登録日2010-05-18
公開日2011-03-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.648 Å)
主引用文献Selective hydrophobic pocket binding observed within the carbonic anhydrase II active site accommodate different 4-substituted-ureido-benzenesulfonamides and correlate to inhibitor potency.
Chem.Commun.(Camb.), 46, 2010
8RS0
DownloadVisualize
BU of 8rs0 by Molmil
Structure of RyR1 in detergent in primed state in complex with nanobody and FKBP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, CALCIUM ION, ...
著者Li, C, Efremov, R.G.
登録日2024-01-24
公開日2024-10-09
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Rapid small-scale nanobody-assisted purification of ryanodine receptors for cryo-EM.
J.Biol.Chem., 300, 2024
8RRX
DownloadVisualize
BU of 8rrx by Molmil
Structure of RyR1 reconstituted into lipid nanodisc in primed state in complex with Ca2+, ATP, caffeine and Nb9657
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, ...
著者Li, C, Efremov, R.G.
登録日2024-01-23
公開日2024-10-09
最終更新日2024-11-20
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Rapid small-scale nanobody-assisted purification of ryanodine receptors for cryo-EM.
J.Biol.Chem., 300, 2024
8XOM
DownloadVisualize
BU of 8xom by Molmil
Cryo-EM structure of human ABCC4 in complex with ANP-bound in NBD1 and METHOTREXATE
分子名称: 2-[2-[(1~{S},2~{S},4~{S},5'~{R},6~{R},7~{S},8~{R},9~{S},12~{S},13~{R},16~{S})-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icos-18-ene-6,2'-oxane]-16-yl]oxyethyl]propane-1,3-diol, ATP-binding cassette sub-family C member 4, MAGNESIUM ION, ...
著者Zhang, P.F, Liu, Z.
登録日2024-01-01
公開日2024-07-17
最終更新日2024-09-04
実験手法ELECTRON MICROSCOPY (3.05 Å)
主引用文献The ATP-bound inward-open conformation of ABCC4 reveals asymmetric ATP binding for substrate transport.
Febs Lett., 598, 2024
8S00
DownloadVisualize
BU of 8s00 by Molmil
CpKRS complexed with lysine and an inhibitor
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 6-oxidanyl-~{N}-[(1-oxidanylcyclohexyl)methyl]-4-oxidanylidene-chromene-2-carboxamide, GLYCEROL, ...
著者Dawson, A, Baragana, B, Caldwell, N.
登録日2024-02-13
公開日2024-11-06
最終更新日2025-07-09
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Cryptosporidium lysyl-tRNA synthetase inhibitors define the interplay between solubility and permeability required to achieve efficacy.
Sci Transl Med, 16, 2024
6EM5
DownloadVisualize
BU of 6em5 by Molmil
State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
分子名称: 25S rRNA (cytosine(2870)-C(5))-methyltransferase, 25S ribosomal RNA, 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase, ...
著者Kater, L, Cheng, J, Barrio-Garcia, C, Hurt, E, Beckmann, R.
登録日2017-10-01
公開日2017-12-27
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes.
Cell, 171, 2017
8RZA
DownloadVisualize
BU of 8rza by Molmil
Ribonuclease W
分子名称: MAGNESIUM ION, PHOSPHATE ION, Probable ribonuclease FAU-1, ...
著者Vayssieres, M, Blaud, M, Leulliot, N.
登録日2024-02-12
公開日2024-11-06
最終更新日2024-12-04
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献RNase W, a conserved ribonuclease family with a novel active site.
Nucleic Acids Res., 52, 2024
7Z51
DownloadVisualize
BU of 7z51 by Molmil
Tick-borne encephalitis virus Kuutsalo-14
分子名称: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope protein E, ...
著者Pulkkinen, L.I.A, Barrass, S.V, Anastasina, M, Butcher, S.J.
登録日2022-03-07
公開日2022-04-20
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Molecular Organisation of Tick-Borne Encephalitis Virus.
Viruses, 14, 2022
6H39
DownloadVisualize
BU of 6h39 by Molmil
Yeast 20S proteasome in complex with the peptidic non-covalent binding inhibitor RTS-V5
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, MAGNESIUM ION, ...
著者Groll, M, Hansen, F.K.
登録日2018-07-17
公開日2018-11-07
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Discovery of the First-in-Class Dual Histone Deacetylase-Proteasome Inhibitor.
J. Med. Chem., 61, 2018
9BGL
DownloadVisualize
BU of 9bgl by Molmil
Complex of Zinc Finger Antiviral Protein RBD and KHNYN CTD
分子名称: 1,2-ETHANEDIOL, Protein KHNYN, ZINC ION, ...
著者Meagher, J.L, Smith, J.L.
登録日2024-04-19
公開日2025-01-22
実験手法X-RAY DIFFRACTION (2.294 Å)
主引用文献Functional anatomy of zinc finger antiviral protein complexes.
Nat Commun, 15, 2024
3MZC
DownloadVisualize
BU of 3mzc by Molmil
Human carbonic ahydrase II in complex with a benzenesulfonamide inhibitor
分子名称: 4-[(cyclopentylcarbamoyl)amino]benzenesulfonamide, Carbonic anhydrase 2, GLYCEROL, ...
著者Avvaru, B.S, Wagner, J, Robbins, A.H, Mckenna, R.
登録日2010-05-12
公開日2011-03-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.498 Å)
主引用文献Selective hydrophobic pocket binding observed within the carbonic anhydrase II active site accommodate different 4-substituted-ureido-benzenesulfonamides and correlate to inhibitor potency.
Chem.Commun.(Camb.), 46, 2010
4MXW
DownloadVisualize
BU of 4mxw by Molmil
Structure of heterotrimeric lymphotoxin LTa1b2 bound to lymphotoxin beta receptor LTbR and anti-LTa Fab
分子名称: Lymphotoxin-alpha, Lymphotoxin-beta, Tumor necrosis factor receptor superfamily member 3, ...
著者Sudhamsu, J, Yin, J.P, Hymowitz, S.G.
登録日2013-09-26
公開日2013-11-13
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Dimerization of LT beta R by LT alpha 1 beta 2 is necessary and sufficient for signal transduction.
Proc.Natl.Acad.Sci.USA, 110, 2013
8WXW
DownloadVisualize
BU of 8wxw by Molmil
Falcilysin in complex with hemoglobin alpha chain peptide
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Falcilysin, ...
著者Lin, J.Q, Lescar, J.
登録日2023-10-30
公開日2024-08-07
最終更新日2025-02-19
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Inhibition of falcilysin from Plasmodium falciparum by interference with its closed-to-open dynamic transition.
Commun Biol, 7, 2024
9HYT
DownloadVisualize
BU of 9hyt by Molmil
Crystal structure of the GFRaL receptor in complex with an inhibitory cyclic peptide
分子名称: 1,1',1''-(1,3,5-triazinane-1,3,5-triyl)tripropan-1-one, ACETIC ACID, GDNF family receptor alpha-like, ...
著者Sandmark, J, Ek, M.
登録日2025-01-10
公開日2025-10-22
最終更新日2025-11-05
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Design of Bicyclic Peptide Tandems Mimicking the Homodimeric GDF15 Protein to Inhibit GDF15-GFRaL-RET Complex Cell Signaling.
J.Med.Chem., 68, 2025

245011

件を2025-11-19に公開中

PDB statisticsPDBj update infoContact PDBjnumon