PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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6XFW	Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J24 immobile Holliday junction 分子名称: CACODYLATE ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*GP*GP*GP*TP*CP*TP*GP*C)-3'), ... 著者 Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. 登録日 2020-06-16 公開日 2021-07-14 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.053 Å) 主引用文献 The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun, 13, 2022
6XO6	Self-assembly of a 3D DNA crystal lattice (4x6 junction version) containing the J28 immobile Holliday junction 分子名称: CACODYLATE ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*AP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*TP*GP*TP*CP*TP*GP*C)-3'), ... 著者 Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. 登録日 2020-07-06 公開日 2021-07-14 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.108 Å) 主引用文献 The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun, 13, 2022
1MQ2	Human DNA Polymerase Beta Complexed With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine and dAMP 分子名称: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, 5'-D(*CP*CP*GP*AP*CP*(8OG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(2DA))-3', ... 著者 Krahn, J.M, Beard, W.A, Miller, H, Grollman, A.P, Wilson, S.H. 登録日 2002-09-13 公開日 2003-01-28 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structure of DNA Polymerase beta with the Mutagenic DNA Lesion 8-oxodeoxyguanine Reveals Structural Insights into its Coding Potential Structure, 11, 2003
7AIB	MutS-MutL in clamp state 分子名称: DNA (30-MER), DNA mismatch repair protein MutL, DNA mismatch repair protein MutS, ... 著者 Fernandez-Leiro, R, Bhairosing-Kok, D, Sixma, T.K, Lamers, M.H. 登録日 2020-09-26 公開日 2021-03-31 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (4.7 Å) 主引用文献 The selection process of licensing a DNA mismatch for repair. Nat.Struct.Mol.Biol., 28, 2021
7AIC	MutS-MutL in clamp state (kinked clamp domain) 分子名称: DNA (30-MER), DNA mismatch repair protein MutL, DNA mismatch repair protein MutS, ... 著者 Fernandez-Leiro, R, Bhairosing-Kok, D, Sixma, T.K, Lamers, M.H. 登録日 2020-09-26 公開日 2021-03-31 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (5 Å) 主引用文献 The selection process of licensing a DNA mismatch for repair. Nat.Struct.Mol.Biol., 28, 2021
5USB	Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssRNA/ssDNA chimera (rGGTTACGGT) 分子名称: G1R_9mer DNA/RNA (5'-R(*G)-D(P*GP*TP*TP*AP*CP*GP*GP*T)-3'), Protection of telomeres protein 1 著者 Lloyd, N.R, Wuttke, D.S. 登録日 2017-02-13 公開日 2018-04-18 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.615 Å) 主引用文献 Discrimination against RNA Backbones by a ssDNA Binding Protein. Structure, 26, 2018
5USN	Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssRNA/ssDNA chimera (rGrGrUTACGGT) 分子名称: 1-3R_9mer DNA/RNA (5'-R(*GP*GP*U)-D(P*TP*AP*CP*GP*GP*T)-3'), Protection of telomeres protein 1, SODIUM ION 著者 Lloyd, N.R, Wuttke, D.S. 登録日 2017-02-13 公開日 2018-04-18 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Discrimination against RNA Backbones by a ssDNA Binding Protein. Structure, 26, 2018
8SH0	Structure of human POT1 DNA binding domain bound to a 5'-phosphorylated junction of a telomeric DNA hairpin with a 3'-overhang 分子名称: ACETATE ION, DNA (5'-D(P*CP*CP*AP*GP*CP*AP*GP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3'), Protection of telomeres protein 1 著者 Nandakumar, J, Tesmer, V.M. 登録日 2023-04-13 公開日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.16 Å) 主引用文献 Human POT1 protects the telomeric ds-ss DNA junction by capping the 5' end of the chromosome. Science, 381, 2023
5USO	Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssRNA/ssDNA chimera (GGTTACrGrGrU) 分子名称: 7-9R_9mer DNA/RNA (5'-D(*GP*GP*TP*TP*AP*C)-R(P*GP*GP*U)-3'), Protection of telomeres protein 1 著者 Lloyd, N.R, Wuttke, D.S. 登録日 2017-02-13 公開日 2018-04-18 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Discrimination against RNA Backbones by a ssDNA Binding Protein. Structure, 26, 2018
6OZH	Crystal structure of Ciona intestinalis (Ci) Endonuclease V in complex with a 24mer DNA containing an inosine followed by a ribo-adenosine 分子名称: CALCIUM ION, DNA/RNA (5'-D(P*CP*GP*GP*TP*AP*AP*CP*CP*GP*I)-R(P*A)-D(P*TP*AP*TP*GP*CP*AP*GP*CP*AP*TP*TP*TP*C)-3'), endonuclease V isoform X2 著者 Samara, N.L, Yang, W. 登録日 2019-05-15 公開日 2019-09-04 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (3.026 Å) 主引用文献 Evolution of Inosine-Specific Endonuclease V from Bacterial DNase to Eukaryotic RNase. Mol.Cell, 76, 2019
7XHN	Structure of human inner kinetochore CCAN-DNA complex 分子名称: CENP-W, Centromere protein C, Centromere protein H, ... 著者 Sun, L.F, Tian, T, Wang, C.L, Yang, Z.S, Zang, J.Y. 登録日 2022-04-09 公開日 2023-01-25 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (3.71 Å) 主引用文献 Structural insights into human CCAN complex assembled onto DNA. Cell Discov, 8, 2022
4O6A	Mouse cyclic GMP-AMP synthase (cGAS) in complex with DNA 分子名称: Cyclic GMP-AMP synthase, DNA1, DNA2, ... 著者 Zhang, X, Chen, Z, Zhang, X.W, Chen, Z.J. 登録日 2013-12-20 公開日 2014-02-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.859 Å) 主引用文献 The Cytosolic DNA Sensor cGAS Forms an Oligomeric Complex with DNA and Undergoes Switch-like Conformational Changes in the Activation Loop. Cell Rep, 6, 2014
3V4I	Crystal structure of HIV-1 reverse transcriptase (RT) with DNA and AZTTP 分子名称: 3'-AZIDO-3'-DEOXYTHYMIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*AP*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(ATM))-3'), DNA (5'-D(*AP*TP*GP*GP*AP*AP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3'), ... 著者 Das, K, Martinez, S.E, Arnold, E. 登録日 2011-12-15 公開日 2012-01-18 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.7983 Å) 主引用文献 HIV-1 reverse transcriptase complex with DNA and nevirapine reveals non-nucleoside inhibition mechanism. Nat.Struct.Mol.Biol., 19, 2012
5HR4	Structure of Type IIL restriction-modification enzyme MmeI in complex with DNA has implications for engineering of new specificities 分子名称: CALCIUM ION, DNA (5'-D(P*GP*TP*TP*AP*TP*GP*TP*CP*GP*GP*AP*TP*A)-3'), DNA (5'-D(P*TP*AP*TP*CP*CP*GP*AP*CP*AP*TP*AP*AP*C)-3'), ... 著者 Callahan, S.J, Luyten, Y.A, Gupta, Y.K, Wilson, G.G, Roberts, R.J, Morgan, R.D, Aggarwal, A.K. 登録日 2016-01-22 公開日 2016-04-27 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.5964 Å) 主引用文献 Structure of Type IIL Restriction-Modification Enzyme MmeI in Complex with DNA Has Implications for Engineering New Specificities. Plos Biol., 14, 2016
4HIF	Ultrahigh-resolution crystal structure of Z-DNA in complex with Zn2+ ions 分子名称: CHLORIDE ION, DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), SPERMINE (FULLY PROTONATED FORM), ... 著者 Drozdzal, P, Gilski, M, Kierzek, R, Lomozik, L, Jaskolski, M. 登録日 2012-10-11 公開日 2013-06-05 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (0.85 Å) 主引用文献 Ultrahigh-resolution crystal structures of Z-DNA in complex with Mn(2+) and Zn(2+) ions. Acta Crystallogr.,Sect.D, 69, 2013
3RKQ	NKX2.5 Homeodomain dimer bound to ANF-242 DNA 分子名称: ANF-242 DNA, Homeobox protein Nkx-2.5, MAGNESIUM ION 著者 Genis, C, Scone, P, Kasahara, H, Nam, H.-J. 登録日 2011-04-18 公開日 2012-05-09 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal structure of the human NKX2.5 homeodomain in complex with DNA target. Biochemistry, 51, 2012
3WDF	Staphylococcus aureus UDG 分子名称: Uracil-DNA glycosylase 著者 Wang, H.C, Ko, T.P, Wang, A.H.J. 登録日 2013-06-18 公開日 2014-02-05 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.48 Å) 主引用文献 Staphylococcus aureus protein SAUGI acts as a uracil-DNA glycosylase inhibitor. Nucleic Acids Res., 42, 2013
3WPI	Crystal structure of mouse TLR9 in complex with inhibitory DNA_super 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, DNA (5'-D(*CP*CP*TP*CP*AP*AP*TP*AP*GP*GP*GP*TP*GP*AP*GP*GP*GP*G)-3'), Toll-like receptor 9 著者 Ohto, U, Shimizu, T. 登録日 2014-01-11 公開日 2015-02-11 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2.246 Å) 主引用文献 Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9 Nature, 520, 2015
3WPC	Crystal structure of horse TLR9 in complex with agonistic DNA1668_12mer 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DNA (5'-D(*CP*AP*TP*GP*AP*CP*GP*TP*TP*CP*CP*T)-3'), ... 著者 Ohto, U, Tanji, H, Shimizu, T. 登録日 2014-01-11 公開日 2015-02-11 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9 Nature, 520, 2015
2D5V	Crystal structure of HNF-6alpha DNA-binding domain in complex with the TTR promoter 分子名称: 5'-D(*AP*TP*TP*AP*TP*TP*GP*AP*CP*TP*TP*AP*GP*A)-3', 5'-D(*TP*CP*TP*AP*AP*GP*TP*CP*AP*AP*TP*AP*AP*T)-3', ACETATE ION, ... 著者 Iyaguchi, D, Yao, M, Watanabe, N, Nishihira, J, Tanaka, I. 登録日 2005-11-07 公開日 2006-12-05 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 DNA recognition mechanism of the ONECUT homeodomain of transcription factor HNF-6 Structure, 15, 2007
4P0P	Crystal structure of Human Mus81-Eme1 in complex with 5'-flap DNA, and Mg2+ 分子名称: Crossover junction endonuclease EME1, Crossover junction endonuclease MUS81, DNA GAATGTGTGTCTCAATC, ... 著者 Gwon, G.H, Baek, K, Cho, Y. 登録日 2014-02-22 公開日 2014-05-28 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structures of the structure-selective nuclease Mus81-Eme1 bound to flap DNA substrates. Embo J., 33, 2014
7F9H	complex structure of EnrR-DNA 分子名称: EnrR repressor, target DNA 著者 Gan, J.H, Wang, Q.Y. 登録日 2021-07-04 公開日 2022-05-11 最終更新日 2022-05-18 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Xenogeneic nucleoid-associated EnrR thwarts H-NS silencing of bacterial virulence with unique DNA binding. Nucleic Acids Res., 50, 2022
2BPG	STRUCTURES OF TERNARY COMPLEXES OF RAT DNA POLYMERASE BETA, A DNA TEMPLATE-PRIMER, AND DDCTP 分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA (5'-D(*CP*GP*GP*CP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*G)-3'), ... 著者 Pelletier, H, Sawaya, M.R, Kumar, A, Wilson, S.H, Kraut, J. 登録日 1994-05-19 公開日 1994-08-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP. Science, 264, 1994
1C8C	CRYSTAL STRUCTURES OF THE CHROMOSOMAL PROTEINS SSO7D/SAC7D BOUND TO DNA CONTAINING T-G MISMATCHED BASE PAIRS 分子名称: 5'-D(*GP*TP*GP*AP*TP*CP*GP*C)-3', DNA-BINDING PROTEIN 7A 著者 Su, S, Gao, Y.-G, Robinson, H, Liaw, Y.-C, Edmondson, S.P, Shriver, J.W, Wang, A.H.-J. 登録日 2000-05-04 公開日 2001-05-04 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Crystal structures of the chromosomal proteins Sso7d/Sac7d bound to DNA containing T-G mismatched base-pairs. J.Mol.Biol., 303, 2000
4LEZ	Structure of mouse cGAS bound to an 18bp DNA and cGAS product 分子名称: 18bp dsDNA, Cyclic GMP-AMP synthase, ZINC ION, ... 著者 Li, P. 登録日 2013-06-26 公開日 2013-12-25 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.36 Å) 主引用文献 Cyclic GMP-AMP Synthase Is Activated by Double-Stranded DNA-Induced Oligomerization. Immunity, 39, 2013

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