6XFW
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 6xfw by Molmil](/molmil-images/mine/6xfw) | Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J24 immobile Holliday junction | 分子名称: | CACODYLATE ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*GP*GP*GP*TP*CP*TP*GP*C)-3'), ... | 著者 | Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. | 登録日 | 2020-06-16 | 公開日 | 2021-07-14 | 最終更新日 | 2023-10-18 | 実験手法 | X-RAY DIFFRACTION (3.053 Å) | 主引用文献 | The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun, 13, 2022
|
|
6XO6
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 6xo6 by Molmil](/molmil-images/mine/6xo6) | Self-assembly of a 3D DNA crystal lattice (4x6 junction version) containing the J28 immobile Holliday junction | 分子名称: | CACODYLATE ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*AP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*TP*GP*TP*CP*TP*GP*C)-3'), ... | 著者 | Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. | 登録日 | 2020-07-06 | 公開日 | 2021-07-14 | 最終更新日 | 2023-10-18 | 実験手法 | X-RAY DIFFRACTION (3.108 Å) | 主引用文献 | The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun, 13, 2022
|
|
1MQ2
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1mq2 by Molmil](/molmil-images/mine/1mq2) | Human DNA Polymerase Beta Complexed With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine and dAMP | 分子名称: | 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, 5'-D(*CP*CP*GP*AP*CP*(8OG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(2DA))-3', ... | 著者 | Krahn, J.M, Beard, W.A, Miller, H, Grollman, A.P, Wilson, S.H. | 登録日 | 2002-09-13 | 公開日 | 2003-01-28 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | 主引用文献 | Structure of DNA Polymerase beta with the Mutagenic DNA Lesion 8-oxodeoxyguanine Reveals
Structural Insights into its Coding Potential Structure, 11, 2003
|
|
7AIB
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7aib by Molmil](/molmil-images/mine/7aib) | MutS-MutL in clamp state | 分子名称: | DNA (30-MER), DNA mismatch repair protein MutL, DNA mismatch repair protein MutS, ... | 著者 | Fernandez-Leiro, R, Bhairosing-Kok, D, Sixma, T.K, Lamers, M.H. | 登録日 | 2020-09-26 | 公開日 | 2021-03-31 | 最終更新日 | 2024-05-01 | 実験手法 | ELECTRON MICROSCOPY (4.7 Å) | 主引用文献 | The selection process of licensing a DNA mismatch for repair. Nat.Struct.Mol.Biol., 28, 2021
|
|
7AIC
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7aic by Molmil](/molmil-images/mine/7aic) | MutS-MutL in clamp state (kinked clamp domain) | 分子名称: | DNA (30-MER), DNA mismatch repair protein MutL, DNA mismatch repair protein MutS, ... | 著者 | Fernandez-Leiro, R, Bhairosing-Kok, D, Sixma, T.K, Lamers, M.H. | 登録日 | 2020-09-26 | 公開日 | 2021-03-31 | 最終更新日 | 2024-05-01 | 実験手法 | ELECTRON MICROSCOPY (5 Å) | 主引用文献 | The selection process of licensing a DNA mismatch for repair. Nat.Struct.Mol.Biol., 28, 2021
|
|
5USB
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 5usb by Molmil](/molmil-images/mine/5usb) | |
5USN
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 5usn by Molmil](/molmil-images/mine/5usn) | |
8SH0
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 8sh0 by Molmil](/molmil-images/mine/8sh0) | |
5USO
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 5uso by Molmil](/molmil-images/mine/5uso) | |
6OZH
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 6ozh by Molmil](/molmil-images/mine/6ozh) | |
7XHN
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7xhn by Molmil](/molmil-images/mine/7xhn) | Structure of human inner kinetochore CCAN-DNA complex | 分子名称: | CENP-W, Centromere protein C, Centromere protein H, ... | 著者 | Sun, L.F, Tian, T, Wang, C.L, Yang, Z.S, Zang, J.Y. | 登録日 | 2022-04-09 | 公開日 | 2023-01-25 | 最終更新日 | 2024-07-03 | 実験手法 | ELECTRON MICROSCOPY (3.71 Å) | 主引用文献 | Structural insights into human CCAN complex assembled onto DNA. Cell Discov, 8, 2022
|
|
4O6A
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 4o6a by Molmil](/molmil-images/mine/4o6a) | Mouse cyclic GMP-AMP synthase (cGAS) in complex with DNA | 分子名称: | Cyclic GMP-AMP synthase, DNA1, DNA2, ... | 著者 | Zhang, X, Chen, Z, Zhang, X.W, Chen, Z.J. | 登録日 | 2013-12-20 | 公開日 | 2014-02-05 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (1.859 Å) | 主引用文献 | The Cytosolic DNA Sensor cGAS Forms an Oligomeric Complex with DNA and Undergoes Switch-like Conformational Changes in the Activation Loop. Cell Rep, 6, 2014
|
|
3V4I
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3v4i by Molmil](/molmil-images/mine/3v4i) | Crystal structure of HIV-1 reverse transcriptase (RT) with DNA and AZTTP | 分子名称: | 3'-AZIDO-3'-DEOXYTHYMIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*AP*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(ATM))-3'), DNA (5'-D(*AP*TP*GP*GP*AP*AP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3'), ... | 著者 | Das, K, Martinez, S.E, Arnold, E. | 登録日 | 2011-12-15 | 公開日 | 2012-01-18 | 最終更新日 | 2023-09-13 | 実験手法 | X-RAY DIFFRACTION (2.7983 Å) | 主引用文献 | HIV-1 reverse transcriptase complex with DNA and nevirapine reveals non-nucleoside inhibition mechanism. Nat.Struct.Mol.Biol., 19, 2012
|
|
5HR4
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 5hr4 by Molmil](/molmil-images/mine/5hr4) | Structure of Type IIL restriction-modification enzyme MmeI in complex with DNA has implications for engineering of new specificities | 分子名称: | CALCIUM ION, DNA (5'-D(P*GP*TP*TP*AP*TP*GP*TP*CP*GP*GP*AP*TP*A)-3'), DNA (5'-D(P*TP*AP*TP*CP*CP*GP*AP*CP*AP*TP*AP*AP*C)-3'), ... | 著者 | Callahan, S.J, Luyten, Y.A, Gupta, Y.K, Wilson, G.G, Roberts, R.J, Morgan, R.D, Aggarwal, A.K. | 登録日 | 2016-01-22 | 公開日 | 2016-04-27 | 最終更新日 | 2024-03-06 | 実験手法 | X-RAY DIFFRACTION (2.5964 Å) | 主引用文献 | Structure of Type IIL Restriction-Modification Enzyme MmeI in Complex with DNA Has Implications for Engineering New Specificities. Plos Biol., 14, 2016
|
|
4HIF
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 4hif by Molmil](/molmil-images/mine/4hif) | Ultrahigh-resolution crystal structure of Z-DNA in complex with Zn2+ ions | 分子名称: | CHLORIDE ION, DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), SPERMINE (FULLY PROTONATED FORM), ... | 著者 | Drozdzal, P, Gilski, M, Kierzek, R, Lomozik, L, Jaskolski, M. | 登録日 | 2012-10-11 | 公開日 | 2013-06-05 | 最終更新日 | 2023-09-20 | 実験手法 | X-RAY DIFFRACTION (0.85 Å) | 主引用文献 | Ultrahigh-resolution crystal structures of Z-DNA in complex with Mn(2+) and Zn(2+) ions. Acta Crystallogr.,Sect.D, 69, 2013
|
|
3RKQ
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3rkq by Molmil](/molmil-images/mine/3rkq) | NKX2.5 Homeodomain dimer bound to ANF-242 DNA | 分子名称: | ANF-242 DNA, Homeobox protein Nkx-2.5, MAGNESIUM ION | 著者 | Genis, C, Scone, P, Kasahara, H, Nam, H.-J. | 登録日 | 2011-04-18 | 公開日 | 2012-05-09 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Crystal structure of the human NKX2.5 homeodomain in complex with DNA target. Biochemistry, 51, 2012
|
|
3WDF
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3wdf by Molmil](/molmil-images/mine/3wdf) | Staphylococcus aureus UDG | 分子名称: | Uracil-DNA glycosylase | 著者 | Wang, H.C, Ko, T.P, Wang, A.H.J. | 登録日 | 2013-06-18 | 公開日 | 2014-02-05 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.48 Å) | 主引用文献 | Staphylococcus aureus protein SAUGI acts as a uracil-DNA glycosylase inhibitor. Nucleic Acids Res., 42, 2013
|
|
3WPI
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3wpi by Molmil](/molmil-images/mine/3wpi) | |
3WPC
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3wpc by Molmil](/molmil-images/mine/3wpc) | Crystal structure of horse TLR9 in complex with agonistic DNA1668_12mer | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DNA (5'-D(*CP*AP*TP*GP*AP*CP*GP*TP*TP*CP*CP*T)-3'), ... | 著者 | Ohto, U, Tanji, H, Shimizu, T. | 登録日 | 2014-01-11 | 公開日 | 2015-02-11 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9 Nature, 520, 2015
|
|
2D5V
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2d5v by Molmil](/molmil-images/mine/2d5v) | Crystal structure of HNF-6alpha DNA-binding domain in complex with the TTR promoter | 分子名称: | 5'-D(*AP*TP*TP*AP*TP*TP*GP*AP*CP*TP*TP*AP*GP*A)-3', 5'-D(*TP*CP*TP*AP*AP*GP*TP*CP*AP*AP*TP*AP*AP*T)-3', ACETATE ION, ... | 著者 | Iyaguchi, D, Yao, M, Watanabe, N, Nishihira, J, Tanaka, I. | 登録日 | 2005-11-07 | 公開日 | 2006-12-05 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | DNA recognition mechanism of the ONECUT homeodomain of transcription factor HNF-6 Structure, 15, 2007
|
|
4P0P
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 4p0p by Molmil](/molmil-images/mine/4p0p) | Crystal structure of Human Mus81-Eme1 in complex with 5'-flap DNA, and Mg2+ | 分子名称: | Crossover junction endonuclease EME1, Crossover junction endonuclease MUS81, DNA GAATGTGTGTCTCAATC, ... | 著者 | Gwon, G.H, Baek, K, Cho, Y. | 登録日 | 2014-02-22 | 公開日 | 2014-05-28 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Crystal structures of the structure-selective nuclease Mus81-Eme1 bound to flap DNA substrates. Embo J., 33, 2014
|
|
7F9H
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7f9h by Molmil](/molmil-images/mine/7f9h) | complex structure of EnrR-DNA | 分子名称: | EnrR repressor, target DNA | 著者 | Gan, J.H, Wang, Q.Y. | 登録日 | 2021-07-04 | 公開日 | 2022-05-11 | 最終更新日 | 2022-05-18 | 実験手法 | X-RAY DIFFRACTION (1.78 Å) | 主引用文献 | Xenogeneic nucleoid-associated EnrR thwarts H-NS silencing of bacterial virulence with unique DNA binding. Nucleic Acids Res., 50, 2022
|
|
2BPG
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2bpg by Molmil](/molmil-images/mine/2bpg) | STRUCTURES OF TERNARY COMPLEXES OF RAT DNA POLYMERASE BETA, A DNA TEMPLATE-PRIMER, AND DDCTP | 分子名称: | 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA (5'-D(*CP*GP*GP*CP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*G)-3'), ... | 著者 | Pelletier, H, Sawaya, M.R, Kumar, A, Wilson, S.H, Kraut, J. | 登録日 | 1994-05-19 | 公開日 | 1994-08-31 | 最終更新日 | 2024-02-14 | 実験手法 | X-RAY DIFFRACTION (3.6 Å) | 主引用文献 | Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP. Science, 264, 1994
|
|
1C8C
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1c8c by Molmil](/molmil-images/mine/1c8c) | CRYSTAL STRUCTURES OF THE CHROMOSOMAL PROTEINS SSO7D/SAC7D BOUND TO DNA CONTAINING T-G MISMATCHED BASE PAIRS | 分子名称: | 5'-D(*GP*TP*GP*AP*TP*CP*GP*C)-3', DNA-BINDING PROTEIN 7A | 著者 | Su, S, Gao, Y.-G, Robinson, H, Liaw, Y.-C, Edmondson, S.P, Shriver, J.W, Wang, A.H.-J. | 登録日 | 2000-05-04 | 公開日 | 2001-05-04 | 最終更新日 | 2023-08-09 | 実験手法 | X-RAY DIFFRACTION (1.45 Å) | 主引用文献 | Crystal structures of the chromosomal proteins Sso7d/Sac7d bound to DNA containing T-G mismatched base-pairs. J.Mol.Biol., 303, 2000
|
|
4LEZ
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 4lez by Molmil](/molmil-images/mine/4lez) | |