PDB: 5515 件ウェブページステータス検索Chemie searchBIRD

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3TDM	Computationally designed TIM-barrel protein, HalfFLR 分子名称: Computationally designed two-fold symmetric TIM-barrel protein, FLR (half molecule), PHOSPHATE ION 著者 Harp, J.M, Fortenberry, C, Bowman, E, Profitt, W, Dorr, B, Mizoue, L. 登録日 2011-08-11 公開日 2011-11-16 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Exploring symmetry as an avenue to the computational design of large protein domains. J.Am.Chem.Soc., 133, 2011
3UC8	Trp-cage cyclo-TC1 - tetragonal crystal form 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, cyclo-TC1 著者 Scian, M, Le Trong, I, Stenkamp, R.E, Andersen, N.H. 登録日 2011-10-26 公開日 2012-07-18 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.33 Å) 主引用文献 Crystal and NMR structures of a Trp-cage mini-protein benchmark for computational fold prediction. Proc.Natl.Acad.Sci.USA, 109, 2012
1GKA	The molecular basis of the coloration mechanism in lobster shell. beta-crustacyanin at 3.2 A resolution 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ASTAXANTHIN, ... 著者 Cianci, M, Rizkallah, P.J, Olczak, A, Raftery, J, Chayen, N.E, Zagalsky, P.F, Helliwell, J.R. 登録日 2001-08-10 公開日 2002-08-08 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (3.23 Å) 主引用文献 The Molecular Basis of the Coloration Mechanism in Lobster Shell: Beta -Crustacyanin at 3.2-A Resolution Proc.Natl.Acad.Sci.USA, 99, 2002
1HP0	CRYSTAL STRUCTURE OF AN INOSINE-ADENOSINE-GUANOSINE-PREFERRING NUCLEOSIDE HYDROLASE FROM TRYPANOSOMA VIVAX IN COMPLEX WITH THE SUBSTRATE ANALOGUE 3-DEAZA-ADENOSINE 分子名称: 3-DEAZA-ADENOSINE, CALCIUM ION, INOSINE-ADENOSINE-GUANOSINE-PREFERRING NUCLEOSIDE HYDROLASE 著者 Versees, W, Decanniere, K, Pelle, R, Depoorter, J, Parkin, D.W, Steyaert, J. 登録日 2000-12-12 公開日 2001-12-12 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structure and function of a novel purine specific nucleoside hydrolase from Trypanosoma vivax. J.Mol.Biol., 307, 2001
1NBU	7,8-Dihydroneopterin Aldolase Complexed with Product From Mycobacterium Tuberculosis 分子名称: 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE, Probable dihydroneopterin aldolase 著者 Goulding, C.W, Apostol, M.I, Sawaya, M.R, Phillips, M, Parseghian, A, Eisenberg, D, TB Structural Genomics Consortium (TBSGC) 登録日 2002-12-03 公開日 2004-01-13 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Regulation by oligomerization in a mycobacterial folate biosynthetic enzyme. J.Mol.Biol., 349, 2005
3TDN	Computationally designed two-fold symmetric Tim-barrel protein, FLR 分子名称: FLR SYMMETRIC ALPHA-BETA TIM BARREL 著者 Harp, J.M, Fortenberry, C, Bowman, E, Profitt, W, Dorr, B, Mizoue, L, Meiler, J. 登録日 2011-08-11 公開日 2011-11-16 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Exploring symmetry as an avenue to the computational design of large protein domains. J.Am.Chem.Soc., 133, 2011
6B3J	3.3 angstrom phase-plate cryo-EM structure of a biased agonist-bound human GLP-1 receptor-Gs complex 分子名称: Exendin-P5, Glucagon-like peptide 1 receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ... 著者 Liang, Y.L, Khoshouei, M, Glukhova, A, Furness, S.G.B, Koole, C, Zhao, P, Clydesdale, L, Thal, D.M, Radjainia, M, Danev, R, Baumeister, W, Wang, M.W, Miller, L.J, Christopoulos, A, Sexton, P.M, Wootten, D. 登録日 2017-09-22 公開日 2018-02-21 最終更新日 2020-01-15 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Phase-plate cryo-EM structure of a biased agonist-bound human GLP-1 receptor-Gs complex. Nature, 555, 2018
1HOZ	CRYSTAL STRUCTURE OF AN INOSINE-ADENOSINE-GUANOSINE-PREFERRING NUCLEOSIDE HYDROLASE FROM TRYPANOSOMA VIVAX 分子名称: CALCIUM ION, GLYCEROL, INOSINE-ADENOSINE-GUANOSINE-PREFERRING NUCLEOSIDE HYDROLASE 著者 Versees, W, Decanniere, K, Pelle, R, Depoorter, J, Parkin, D.W, Steyaert, J. 登録日 2000-12-12 公開日 2001-12-12 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structure and function of a novel purine specific nucleoside hydrolase from Trypanosoma vivax. J.Mol.Biol., 307, 2001
3WWF	Crystal structure of the computationally designed Pizza2-SR protein 分子名称: pizza2sr-pb protein 著者 Voet, A.R.D, Noguchi, H, Addy, C, Simoncini, D, Terada, D, Unzai, S, Park, S.Y, Zhang, K.Y.J, Tame, J.R.H. 登録日 2014-06-17 公開日 2014-10-08 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.601 Å) 主引用文献 Computational design of a self-assembling symmetrical beta-propeller protein. Proc.Natl.Acad.Sci.USA, 111, 2014
3UC7	Trp-cage cyclo-TC1 - monoclinic crystal form 分子名称: CHLORIDE ION, Cyclo-TC1 著者 Scian, M, Le Trong, I, Stenkamp, R.E, Andersen, N.H. 登録日 2011-10-26 公開日 2012-07-18 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Crystal and NMR structures of a Trp-cage mini-protein benchmark for computational fold prediction. Proc.Natl.Acad.Sci.USA, 109, 2012
3WWB	Crystal structure of the computationally designed Pizza2-SR protein 分子名称: Pizza2-SR protein 著者 Voet, A.R.D, Noguchi, H, Addy, C, Simoncini, D, Terada, D, Unzai, S, Park, S.Y, Zhang, K.Y.J, Tame, J.R.H. 登録日 2014-06-17 公開日 2014-10-08 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Computational design of a self-assembling symmetrical beta-propeller protein. Proc.Natl.Acad.Sci.USA, 111, 2014
3WWA	Crystal structure of the computationally designed Pizza7 protein after heat treatment 分子名称: ISOPROPYL ALCOHOL, Pizza7H protein 著者 Voet, A.R.D, Noguchi, H, Addy, C, Simoncini, D, Terada, D, Unzai, S, Park, S.Y, Zhang, K.Y.J, Tame, J.R.H. 登録日 2014-06-17 公開日 2014-10-08 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.988 Å) 主引用文献 Computational design of a self-assembling symmetrical beta-propeller protein. Proc.Natl.Acad.Sci.USA, 111, 2014
3VB8	Crystal Structure of Engineered Protein, Northeast Structural Genomics Consortium Target OR43 分子名称: Engineered protein, SULFATE ION 著者 Seetharaman, J, Su, M, Procko, E, Baker, D, Ciccosanti, C, Sahdev, S, Xiao, R, Everett, J.K, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG) 登録日 2011-12-31 公開日 2012-06-06 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Computational design of a protein-based enzyme inhibitor. J.Mol.Biol., 425, 2013
3WW9	Crystal structure of the computationally designed Pizza6 protein 分子名称: GLYCEROL, SULFATE ION, pizza6 protein 著者 Voet, A.R.D, Noguchi, H, Addy, C, Simoncini, D, Terada, D, Unzai, S, Park, S.Y, Zhang, K.Y.J, Tame, J.R.H. 登録日 2014-06-17 公開日 2014-10-08 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.33 Å) 主引用文献 Computational design of a self-assembling symmetrical beta-propeller protein. Proc.Natl.Acad.Sci.USA, 111, 2014
3WW7	Crystal structure of the computationally designed Pizza2 protein 分子名称: GLYCEROL, Pizza2 protein 著者 Voet, A.R.D, Noguchi, H, Addy, C, Simoncini, D, Terada, D, Unzai, S, Park, S.Y, Zhang, K.Y.J, Tame, J.R.H. 登録日 2014-06-17 公開日 2014-10-08 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.697 Å) 主引用文献 Computational design of a self-assembling symmetrical beta-propeller protein. Proc.Natl.Acad.Sci.USA, 111, 2014
1O8V	The crystal structure of Echinococcus granulosus fatty-acid-binding protein 1 分子名称: FATTY ACID BINDING PROTEIN HOMOLOG, PALMITIC ACID 著者 Jakobsson, E, Alvite, G, Bergfors, T, Esteves, A, Kleywegt, G.J. 登録日 2002-12-04 公開日 2003-06-19 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 The Crystal Structure of Echinococcus Granulosus Fatty-Acid-Binding Protein 1 Biochim.Biophys.Acta, 1649, 2003
1Q0N	CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE FROM E. COLI WITH MGAMPCPP AND 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN AT 1.25 ANGSTROM RESOLUTION 分子名称: 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, ACETATE ION, ... 著者 Blaszczyk, J, Ji, X. 登録日 2003-07-16 公開日 2003-08-26 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Catalytic Center Assembly of Hppk as Revealed by the Crystal Structure of a Ternary Complex at 1.25 A Resolution Structure, 8, 2000
8B14	T5 Receptor Binding Protein pb5 in complex with its E. coli receptor FhuA 分子名称: DECYLAMINE-N,N-DIMETHYL-N-OXIDE, FhuA iron-ferrichrome transporter, [(2R,3S,4R,5R,6R)-2-[[(2R,4R,5R,6R)-6-[(1R)-1,2-bis(oxidanyl)ethyl]-4-[(2R,4R,5R,6R)-6-[(1R)-1,2-bis(oxidanyl)ethyl]-2-carboxy-4,5-bis(oxidanyl)oxan-2-yl]oxy-2-carboxy-5-oxidanyl-oxan-2-yl]oxymethyl]-5-[[(3R)-3-dodecanoyloxytetradecanoyl]amino]-4-(3-nonanoyloxypropanoyloxy)-6-[[(2R,3S,4R,5R,6R)-3-oxidanyl-4-[(3S)-3-oxidanyltetradecanoyl]oxy-5-[[(3R)-3-oxidanyltridecanoyl]amino]-6-phosphonatooxy-oxan-2-yl]methoxy]oxan-3-yl] phosphate, ... 著者 Degroux, S, Effantin, G, Linares, R, Schoehn, G, Breyton, C. 登録日 2022-09-09 公開日 2023-02-08 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (2.6 Å) 主引用文献 Deciphering Bacteriophage T5 Host Recognition Mechanism and Infection Trigger. J.Virol., 97, 2023
7OZ3	S. agalactiae BusR in complex with its busA-promotor DNA 分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, GntR family transcriptional regulator, pBusA_for, ... 著者 Bandera, A.M, Witte, G. 登録日 2021-06-25 公開日 2021-08-11 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (4.46 Å) 主引用文献 BusR senses bipartite DNA binding motifs by a unique molecular ruler architecture. Nucleic Acids Res., 49, 2021
5VSU	Structure of yeast U6 snRNP with 2'-phosphate terminated U6 RNA 分子名称: Saccharomyces cerevisiae strain T8 chromosome XII sequence, U4/U6 snRNA-associated-splicing factor PRP24, U6 snRNA-associated Sm-like protein LSm2, ... 著者 Montemayor, E.J. 登録日 2017-05-12 公開日 2018-05-09 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Architecture of the U6 snRNP reveals specific recognition of 3'-end processed U6 snRNA. Nat Commun, 9, 2018
4WAD	Crystal Structure of TarM with UDP-GlcNAc 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Glycosyl transferase, ... 著者 Koc, C, Stehle, T, Xia, G, Peschel, A. 登録日 2014-08-29 公開日 2015-02-25 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural and Enzymatic Analysis of TarM Glycosyltransferase from Staphylococcus aureus Reveals an Oligomeric Protein Specific for the Glycosylation of Wall Teichoic Acid. J.Biol.Chem., 290, 2015
4V7E	Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome 分子名称: 18S ribosomal RNA, 40S ribosomal protein S10, 40S ribosomal protein S10E, ... 著者 Barrio-Garcia, C, Armache, J.-P, Jarasch, A, Anger, A.M, Villa, E, Becker, T, Bhushan, S, Jossinet, F, Habeck, M, Dindar, G, Franckenberg, S, Marquez, V, Mielke, T, Thomm, M, Berninghausen, O, Beatrix, B, Soeding, J, Westhof, E, Wilson, D.N, Beckmann, R. 登録日 2013-11-22 公開日 2014-07-09 最終更新日 2023-02-01 実験手法 ELECTRON MICROSCOPY (5.5 Å) 主引用文献 Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion. Nature, 506, 2014
5VKQ	Structure of a mechanotransduction ion channel Drosophila NOMPC in nanodisc 分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE, No mechanoreceptor potential C isoform L 著者 Jin, P, Bulkley, D, Guo, Y, Zhang, W, Guo, Z, Huynh, W, Wu, S, Meltzer, S, Chen, T, Jan, L.Y, Jan, Y.-N, Cheng, Y. 登録日 2017-04-22 公開日 2017-06-28 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.55 Å) 主引用文献 Electron cryo-microscopy structure of the mechanotransduction channel NOMPC. Nature, 547, 2017
4ZK6	Crystallographic Capture of Quinolinate Synthase (NadA) from Pyrococcus horikoshii in its Substrates and Product-Bound States 分子名称: ACETATE ION, CHLORIDE ION, IRON/SULFUR CLUSTER, ... 著者 Esakova, O.A, Grove, T.L, Saunders, A.H, Yennawar, N.H, Booker, S.J. 登録日 2015-04-29 公開日 2016-06-29 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.895 Å) 主引用文献 Structure of Quinolinate Synthase from Pyrococcus horikoshii in the Presence of Its Product, Quinolinic Acid. J.Am.Chem.Soc., 138, 2016
5WA4	Pyridine synthase, TbtD, from thiomuracin biosynthesis bound to an N-terminal leader peptide fragment 分子名称: Pyridine synthase TbtD, TbtA 16-mer peptide 著者 Cogan, D.P, Nair, S.K. 登録日 2017-06-24 公開日 2017-11-22 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.646 Å) 主引用文献 Structural insights into enzymatic [4+2] aza-cycloaddition in thiopeptide antibiotic biosynthesis. Proc. Natl. Acad. Sci. U.S.A., 114, 2017

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