PDB: 5605 件ウェブページステータス検索Chemie searchBIRD

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7BQC	Solution NMR structure of NF4; de novo designed protein with a novel fold 分子名称: NF4 著者 Kobayashi, N, Nagashima, T, Minami, S, Koga, R, Chikenji, T, Koga, N. 登録日 2020-03-24 公開日 2021-03-24 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Exploration of novel alpha-beta-protein folds through de novo design Nat.Struct.Mol.Biol., 2023
1QP6	SOLUTION STRUCTURE OF ALPHA2D 分子名称: PROTEIN (ALPHA2D) 著者 Hill, R.B, DeGrado, W.F. 登録日 1999-06-01 公開日 1999-06-09 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution Structure of Alpha2D, A Nativelike De Novo Designed Protein J.Am.Chem.Soc., 120, 1998
7BQE	Solution NMR structure of NF3; de novo designed protein with a novel fold 分子名称: NF3 著者 Kobayashi, N, Sugiki, T, Fujiwara, T, Minami, S, Koga, R, Chikenji, G, Koga, N. 登録日 2020-03-24 公開日 2021-03-24 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Exploration of novel alpha-beta-protein folds through de novo design Nat.Struct.Mol.Biol., 2023
8UGC	FD15: Flat repeat helix-turn-helix-turn protein 分子名称: FD15 著者 Davila-Hernandez, F, Bera, A.K, Kang, A, Baker, D. 登録日 2023-10-05 公開日 2023-12-27 実験手法 X-RAY DIFFRACTION (4 Å) 主引用文献 Directing polymorph specific calcium carbonate formation with de novo protein templates. Nat Commun, 14, 2023
7BPL	Solution NMR structure of NF1; de novo designed protein with a novel fold 分子名称: NF1 著者 Kobayashi, N, Sugiki, T, Fujiwara, T, Minami, S, Koga, R, Chikenji, G, Koga, N. 登録日 2020-03-23 公開日 2021-03-24 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Exploration of novel alpha-beta-protein folds through de novo design Nat.Struct.Mol.Biol., 2023
2K6R	Protein folding on a highly rugged landscape: Experimental observation of glassy dynamics and structural frustration 分子名称: Full Sequence Design 1 Synthetic Superstable 著者 Sadqi, M, de Alba, E, Perez-Jimenez, R, Sanchez-Ruiz, J.M, Munoz, V. 登録日 2008-07-18 公開日 2009-06-16 最終更新日 2016-06-08 実験手法 SOLUTION NMR 主引用文献 A designed protein as experimental model of primordial folding Proc.Natl.Acad.Sci.USA, 106, 2009
3Q9N	In silico and in vitro co-evolution of a high affinity complementary protein-protein interface 分子名称: CARBAMOYL SARCOSINE, COENZYME A, CoA binding protein, ... 著者 Karanicolas, J, Corn, J.E, Chen, I, Joachimiak, L.A, Dym, O, Chung, S, Albeck, S, Unger, T, Hu, W, Liu, G, Delbecq, S, Montelione, G.T, Spiegel, C, Liu, D, Baker, D, Israel Structural Proteomics Center (ISPC) 登録日 2011-01-09 公開日 2011-04-27 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 A de novo protein binding pair by computational design and directed evolution. Mol.Cell, 42, 2011
3Q9U	In silico and in vitro co-evolution of a high affinity complementary protein-protein interface 分子名称: COENZYME A, CoA binding protein, consensus ankyrin repeat 著者 Karanicolas, J, Corn, J.E, Chen, I, Joachimiak, L.A, Dym, O, Chung, S, Albeck, S, Unger, T, Hu, W, Liu, G, Delbecq, S, Montelione, G.T, Spiegel, C, Liu, D, Baker, D, Israel Structural Proteomics Center (ISPC) 登録日 2011-01-10 公開日 2011-04-20 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 A de novo protein binding pair by computational design and directed evolution. Mol.Cell, 42, 2011
3QA9	Crystal Structure of Prb (PH1109 protein redesigned for binding) 分子名称: CoA binding domain protein 著者 Spiegel, P.C. 登録日 2011-01-10 公開日 2011-04-20 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 A de novo protein binding pair by computational design and directed evolution. Mol.Cell, 42, 2011
7A4Y	Crystal structure of the P5P6 coiled-coil in complex with nanobody Nb34. 分子名称: 1,2-ETHANEDIOL, Coiled-coil P5 peptide, Coiled-coil P6 peptide, ... 著者 Hadzi, S. 登録日 2020-08-20 公開日 2021-05-05 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.157 Å) 主引用文献 A nanobody toolbox targeting dimeric coiled-coil modules for functionalization of designed protein origami structures. Proc.Natl.Acad.Sci.USA, 118, 2021
7A4T	Crystal structure of the GCN coiled-coil in complex with nanobody Nb39 分子名称: 1,2-ETHANEDIOL, ACETYL GROUP, GCN4 isoform 1, ... 著者 Hadzi, S. 登録日 2020-08-20 公開日 2021-05-05 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.124 Å) 主引用文献 A nanobody toolbox targeting dimeric coiled-coil modules for functionalization of designed protein origami structures. Proc.Natl.Acad.Sci.USA, 118, 2021
7A4D	Crystal structure of the APH coiled-coil in complex with nanobodies Nb28 and Nb30 分子名称: 1,2-ETHANEDIOL, ACETATE ION, APH coiled-coil, ... 著者 Hadzi, S. 登録日 2020-08-19 公開日 2021-05-05 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.694 Å) 主引用文献 A nanobody toolbox targeting dimeric coiled-coil modules for functionalization of designed protein origami structures. Proc.Natl.Acad.Sci.USA, 118, 2021
7A50	Crystal structure of the APH coiled-coil in complex with nanobody Nb26 分子名称: 1,2-ETHANEDIOL, Coiled-coil APH, Nanobody Nb26 著者 Hadzi, S. 登録日 2020-08-20 公開日 2021-05-05 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.999 Å) 主引用文献 A nanobody toolbox targeting dimeric coiled-coil modules for functionalization of designed protein origami structures. Proc.Natl.Acad.Sci.USA, 118, 2021
7A48	Crystal structure of the APH coiled-coil in complex with Nb49 分子名称: APH colied-coil, Nanobody 49 著者 Hadzi, S. 登録日 2020-08-19 公開日 2021-05-05 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.547 Å) 主引用文献 A nanobody toolbox targeting dimeric coiled-coil modules for functionalization of designed protein origami structures. Proc.Natl.Acad.Sci.USA, 118, 2021
4ZV6	Crystal structure of the artificial alpharep-7 octarellinV.1 complex 分子名称: AlphaRep-7, Octarellin V.1 著者 Figueroa, M, Sleutel, M, Urvoas, A, Valerio-Lepiniec, M, Minard, P, Martial, J.A, van de Weerdt, C. 登録日 2015-05-18 公開日 2016-05-25 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.22 Å) 主引用文献 The unexpected structure of the designed protein Octarellin V.1 forms a challenge for protein structure prediction tools. J.Struct.Biol., 195, 2016
5BOP	Crystal structure of the artificial nanobody octarellinV.1 complex 分子名称: Nanobody, Octarellin V.1 著者 Figueroa, M, Sleutel, M, Pardon, E, Steyaert, J, Martial, J.A, van de Weerdt, C. 登録日 2015-05-27 公開日 2016-05-25 最終更新日 2016-06-08 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 The unexpected structure of the designed protein Octarellin V.1 forms a challenge for protein structure prediction tools. J.Struct.Biol., 195, 2016
4QKS	Crystal Structure of 6xTrp/PV2: de novo designed beta-trefoil architecture with symmetric primary structure (L22W/L44W/L64W/L85W/L108W/L132W his Primitive Version 2) 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DE NOVO PROTEIN 6XTRP/PV2, SULFATE ION 著者 Longo, L.M, Tenorio, C.A, Blaber, M. 登録日 2014-06-09 公開日 2015-01-14 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 A single aromatic core mutation converts a designed "primitive" protein from halophile to mesophile folding. Protein Sci., 24, 2015
4DRT	Three dimensional structure of de novo designed serine hydrolase OSH26, Northeast Structural Genomics Consortium (NESG) target OR89 分子名称: CHLORIDE ION, SODIUM ION, de novo designed serine hydrolase, ... 著者 Kuzin, A, Su, M, Rajagopalan, S, Seetharaman, J, Sahdev, S, Xiao, R, Ciccosanti, C, Baker, D, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG) 登録日 2012-02-17 公開日 2012-04-18 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.002 Å) 主引用文献 Design of activated serine-containing catalytic triads with atomic-level accuracy. Nat.Chem.Biol., 10, 2014
2L69	Solution NMR Structure of de novo designed protein, P-loop NTPase fold, Northeast Structural Genomics Consortium Target OR28 分子名称: Rossmann 2x3 fold protein 著者 Liu, G, Koga, N, Koga, R, Xiao, R, Mao, A, Mao, B, Patel, D, Ciccosanti, C, Hamilton, K, Acton, T.B, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG) 登録日 2010-11-17 公開日 2011-01-12 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution NMR structure of de novo designed rossmann 2x3 fold protein, Northeast Structural Genomics Consortium Target OR28 To be Published
2MN4	NMR solution structure of a computational designed protein based on structure template 1cy5 分子名称: Computational designed protein based on structure template 1cy5 著者 Xiong, P, Wang, M, Zhang, J, Chen, Q, Liu, H. 登録日 2014-03-28 公開日 2014-10-29 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Protein design with a comprehensive statistical energy function and boosted by experimental selection for foldability Nat Commun, 5, 2014
2N41	Solution NMR Structure of DE NOVO DESIGNED PROTEIN Top7NNSTYCC, Northeast Structural Genomics Consortium (NESG) Target OR34 分子名称: OR34 著者 Liu, G, Chan, K, Basanta, B, Xiao, R, Janjua, H, Kogan, S, Maglaqui, M, Ciccosanti, C, Acton, T.B, Kornhaber, G, Everett, J.K, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG) 登録日 2015-06-16 公開日 2016-03-02 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution NMR Structure of DE NOVO DESIGNED PROTEIN Top7NNSTYCC, Northeast Structural Genomics Consortium (NESG) Target OR34 To be Published
2N4E	Solution NMR Structure of DE NOVO DESIGNED PROTEIN Top7NNSTYCC, Northeast Structural Genomics Consortium (NESG) Target OR34 分子名称: OR34 著者 Liu, G, Chan, K, Basanta, B, Xiao, R, Janjua, H, Kogan, S, Maglaqui, M, Ciccosanti, C, Acton, T.B, Kornhaber, G, Everett, J.K, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG) 登録日 2015-06-17 公開日 2015-12-09 実験手法 SOLUTION NMR 主引用文献 Solution NMR Structure of DE NOVO DESIGNED PROTEIN Top7NNSTYCC, Northeast Structural Genomics Consortium (NESG) Target OR34 To be Published
2N3Z	Solution NMR Structure of de novo designed protein, Rossmann2x2 Fold, Northeast Structural Genomics Consortium (NESG) Target OR446 分子名称: OR446 著者 Liu, G, Lin, Y, Koga, N, Koga, R, Xiao, R, Janjua, H, Pederson, K, Acton, T.B, Kornhaber, G, Everett, J.K, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG) 登録日 2015-06-15 公開日 2015-09-16 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution NMR Structure of DE NOVO DESIGNED PROTEIN, Rossmann2x2 Fold, Northeast Structural Genomics Consortium (NESG) Target OR446 To be Published
2LR0	Solution NMR structure of de novo designed protein, p-loop ntpase fold, northeast structural genomics consortium target or136 分子名称: P-loop ntpase fold 著者 Liu, G, Koga, N, Koga, R, Xiao, R, Lee, H, Janjua, H, Kohan, E, Acton, T.B, Everett, J.K, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG) 登録日 2012-03-19 公開日 2012-07-04 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution NMR structure of de novo designed protein, p-loop ntpase fold, northeast structural genomics consortium target or136 To be Published
4ZN8	Using molecular dynamics simulations to predict domain swapping of computationally designed protein variants 分子名称: POTASSIUM ION, computationally modified engrailed homeodomain 著者 Huang, P.-S, Thomas, L.M, Mayo, S.L. 登録日 2015-05-04 公開日 2015-05-27 最終更新日 2019-11-27 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Using Molecular Dynamics Simulations as an Aid in the Prediction of Domain Swapping of Computationally Designed Protein Variants. J.Mol.Biol., 427, 2015

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