5BOP

Crystal structure of the artificial nanobody octarellinV.1 complex

Summary for 5BOP

DescriptorNanobody, Octarellin V.1 (3 entities in total)
Functional Keywordssynthetic gene, artificial protein, rossmann-like, de novo protein
Biological sourceLama glama (llama)
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Total number of polymer chains4
Total molecular weight79460.52
Authors
Figueroa, M.,Sleutel, M.,Pardon, E.,Steyaert, J.,Martial, J.A.,van de Weerdt, C. (deposition date: 2015-05-27, release date: 2016-05-25, Last modification date: 2016-06-08)
Primary citation
Figueroa, M.,Sleutel, M.,Vandevenne, M.,Parvizi, G.,Attout, S.,Jacquin, O.,Vandenameele, J.,Fischer, A.W.,Damblon, C.,Goormaghtigh, E.,Valerio-Lepiniec, M.,Urvoas, A.,Durand, D.,Pardon, E.,Steyaert, J.,Minard, P.,Maes, D.,Meiler, J.,Matagne, A.,Martial, J.A.,Van de Weerdt, C.
The unexpected structure of the designed protein Octarellin V.1 forms a challenge for protein structure prediction tools.
J.Struct.Biol., 195:19-30, 2016
PubMed: 27181418 (PDB entries with the same primary citation)
DOI: 10.1016/j.jsb.2016.05.004
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.95 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.229301.6%1.9%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5bop
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Molmil generated image of 5bop
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Molmil generated image of 5bop
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 5bop
no rotation
Molmil generated image of 5bop
rotated about x axis by 90°
Molmil generated image of 5bop
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (5bop.pdb2.gz [99.96 KB])
Coordinate files for Biological unit (5bop.pdb1.gz [101.66 KB])