Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5N6U
DownloadVisualize
BU of 5n6u by Molmil
Crystal structure of Beta-D-Mannosidase from Dictyoglomus thermophilum.
分子名称: Beta-mannosidase, beta-D-mannopyranose
著者Richet, N, Lafite, P.
登録日2017-02-16
公開日2017-04-12
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.08 Å)
主引用文献Is the acid/base catalytic residue mutation in beta-d-mannosidase DtMan from Dictyoglomus thermophilum sufficient enough to provide thioglycoligase activity?
Biochimie, 137, 2017
5H2K
DownloadVisualize
BU of 5h2k by Molmil
A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 2 us after photoexcitation
分子名称: 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, DECANE, ...
著者Royant, A, Nango, E, Nakane, T, Tanaka, T, Arima, T, Neutze, R, Iwata, S.
登録日2016-10-15
公開日2016-12-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献A three-dimensional movie of structural changes in bacteriorhodopsin
Science, 354, 2016
7BWL
DownloadVisualize
BU of 7bwl by Molmil
Structure of antibiotic sequester from Pseudomonas aerurinosa
分子名称: UPF0312 protein PA0423, Ubiquinone-8
著者Hong, M.
登録日2020-04-14
公開日2020-12-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Crystal structure of the Pseudomonas aeruginosa PA0423 protein and its functional implication in antibiotic sequestration.
Biochem.Biophys.Res.Commun., 528, 2020
5NA0
DownloadVisualize
BU of 5na0 by Molmil
TTK kinase domain in complex with a PEG-linked pyrimido-indolizine
分子名称: Dual specificity protein kinase TTK, ~{N}-[3,5-diethyl-1-[2-[2-(2-methoxyethoxy)ethoxy]ethyl]pyrazol-4-yl]-2-[[2-methoxy-4-[4-(2-methoxyethanoyl)piperazin-1-yl]phenyl]amino]-5,6-dihydropyrimido[4,5-e]indolizine-7-carboxamide
著者Uitdehaag, J, Willemsen-Seegers, N, de Man, J, Buijsman, R.C, Zaman, G.J.R.
登録日2017-02-27
公開日2017-05-31
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Target Residence Time-Guided Optimization on TTK Kinase Results in Inhibitors with Potent Anti-Proliferative Activity.
J. Mol. Biol., 429, 2017
5H3S
DownloadVisualize
BU of 5h3s by Molmil
apo form of GEMIN5-WD
分子名称: GLYCEROL, Gem-associated protein 5
著者Bharath, S.R, Tang, X, Song, H.
登録日2016-10-27
公開日2016-12-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural basis for specific recognition of pre-snRNA by Gemin5
Cell Res., 26, 2016
6HQ2
DownloadVisualize
BU of 6hq2 by Molmil
Structure of EAL Enzyme Bd1971 - apo form
分子名称: EAL Enzyme Bd1971
著者Lovering, A.L, Cadby, I.T.
登録日2018-09-24
公開日2019-07-31
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Nucleotide signaling pathway convergence in a cAMP-sensing bacterial c-di-GMP phosphodiesterase.
Embo J., 38, 2019
5GT7
DownloadVisualize
BU of 5gt7 by Molmil
Crystal Structure of Arg-bound CASTOR1
分子名称: ARGININE, GATS-like protein 3, MALONATE ION
著者Guo, L, Deng, D.
登録日2016-08-18
公開日2017-08-23
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.048 Å)
主引用文献Crystal structures of arginine sensor CASTOR1 in arginine-bound and ligand free states
Biochem. Biophys. Res. Commun., 508, 2019
4YUB
DownloadVisualize
BU of 4yub by Molmil
Crystal structure of human Nicotinic Acid Phosphoribosyltransferase
分子名称: Nicotinate phosphoribosyltransferase
著者Garavaglia, S, Rizzi, M, Marletta, A.S.
登録日2015-03-18
公開日2015-05-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal structure of human nicotinic acid phosphoribosyltransferase.
Febs Open Bio, 5, 2015
4YV4
DownloadVisualize
BU of 4yv4 by Molmil
Structure of the C. elegans SAS-5 coiled coil domain
分子名称: PHOSPHATE ION, SULFATE ION, Spindle assembly abnormal protein 5
著者Rogala, K.B, Hatzopoulos, G.N, Vakonakis, I.
登録日2015-03-19
公開日2015-06-10
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The Caenorhabditis elegans protein SAS-5 forms large oligomeric assemblies critical for centriole formation.
Elife, 4, 2015
7BVZ
DownloadVisualize
BU of 7bvz by Molmil
Crystal structure of MreB5 of Spiroplasma citri bound to ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, Cell shape determining protein MreB, MAGNESIUM ION, ...
著者Pande, V, Bagde, S.R, Gayathri, P.
登録日2020-04-12
公開日2020-10-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献MreB5 Is a Determinant of Rod-to-Helical Transition in the Cell-Wall-less Bacterium Spiroplasma.
Curr.Biol., 30, 2020
6HVN
DownloadVisualize
BU of 6hvn by Molmil
CdaA-APO Y187A Mutant
分子名称: CHLORIDE ION, Diadenylate cyclase, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
著者Heidemann, J.L, Neumann, P, Ficner, R.
登録日2018-10-11
公開日2019-06-05
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.234 Å)
主引用文献Crystal structures of the c-di-AMP-synthesizing enzyme CdaA.
J.Biol.Chem., 294, 2019
4YWR
DownloadVisualize
BU of 4ywr by Molmil
Structure of a putative phosphomethylpyrimidine kinase from Acinetobacter baumannii in non-covalent complex with pyridoxal phosphate
分子名称: PYRIDOXAL-5'-PHOSPHATE, Putative hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
著者Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2015-03-20
公開日2016-03-02
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Characterization of an Acinetobacter baumannii Monofunctional Phosphomethylpyrimidine Kinase That Is Inhibited by Pyridoxal Phosphate.
Biochemistry, 2024
4YMW
DownloadVisualize
BU of 4ymw by Molmil
Crystal structure of an amino acid ABC transporter with histidines
分子名称: ABC-type amino acid transport system, permease component, ABC-type polar amino acid transport system, ...
著者Ge, J, Yu, J, Yang, M.
登録日2015-03-07
公開日2015-04-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.804 Å)
主引用文献Structural basis for substrate specificity of an amino acid ABC transporter
Proc.Natl.Acad.Sci.USA, 112, 2015
7BR3
DownloadVisualize
BU of 7br3 by Molmil
Crystal structure of the protein 1
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2R)-2,3-dihydroxypropyl dodecanoate, 4-[[(1R)-2-[5-(2-fluoranyl-3-methoxy-phenyl)-3-[[2-fluoranyl-6-(trifluoromethyl)phenyl]methyl]-4-methyl-2,6-bis(oxidanylidene)pyrimidin-1-yl]-1-phenyl-ethyl]amino]butanoic acid, ...
著者Cheng, L, Shao, Z.
登録日2020-03-26
公開日2020-10-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献Structure of the human gonadotropin-releasing hormone receptor GnRH1R reveals an unusual ligand binding mode.
Nat Commun, 11, 2020
6I01
DownloadVisualize
BU of 6i01 by Molmil
Structure of human D-glucuronyl C5 epimerase in complex with substrate
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Debarnot, C, Monneau, Y.R, Roig-Zamboni, V, Le Narvor, C, Goulet, A, Fadel, F, Vives, R.R, Bonnaffe, D, Lortat-Jacob, H, Bourne, Y.
登録日2018-10-24
公開日2019-04-03
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Substrate binding mode and catalytic mechanism of human heparan sulfate d-glucuronyl C5 epimerase.
Proc.Natl.Acad.Sci.USA, 116, 2019
6TBB
DownloadVisualize
BU of 6tbb by Molmil
Crystal structure of S. aureus FabI in complex with NADPH and kalimantacin A (batumin)
分子名称: Enoyl-[acyl-carrier-protein] reductase [NADPH], Kalimantacin, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Fage, C.D, Masschelein, J.
登録日2019-11-01
公開日2020-04-01
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献The Kalimantacin Polyketide Antibiotics Inhibit Fatty Acid Biosynthesis in Staphylococcus aureus by Targeting the Enoyl-Acyl Carrier Protein Binding Site of FabI.
Angew.Chem.Int.Ed.Engl., 59, 2020
5H13
DownloadVisualize
BU of 5h13 by Molmil
EED in complex with PRC2 allosteric inhibitor EED396
分子名称: 4-azanylidene-2-(3-methoxy-4-propan-2-yloxy-phenyl)-6,7-dihydro-[1,3]benzodioxolo[6,5-a]quinolizine-3-carbonitrile, GLYCEROL, PRASEODYMIUM ION, ...
著者Zhao, K, Zhao, M, Luo, X, Zhang, H.
登録日2016-10-08
公開日2017-01-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Discovery and Molecular Basis of a Diverse Set of Polycomb Repressive Complex 2 Inhibitors Recognition by EED
PLoS ONE, 12, 2017
4YD9
DownloadVisualize
BU of 4yd9 by Molmil
Crystal structure of squid hemocyanin
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CU2-O2 CLUSTER, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Matsuno, A, Gai, Z, Kato, K, Tanaka, Y, Yao, M.
登録日2015-02-21
公開日2015-10-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal Structure of the 3.8-MDa Respiratory Supermolecule Hemocyanin at 3.0 angstrom Resolution
Structure, 23, 2015
7BY6
DownloadVisualize
BU of 7by6 by Molmil
Plasmodium vivax cytoplasmic Phenylalanyl-tRNA synthetase in complex with BRD1389
分子名称: (3S,4R,8R,9R,10S)-N-(4-cyclopropyloxyphenyl)-10-(methoxymethyl)-3,4-bis(oxidanyl)-9-[4-(2-phenylethynyl)phenyl]-1,6-diazabicyclo[6.2.0]decane-6-carboxamide, MAGNESIUM ION, Phenylalanyl-tRNA synthetase beta chain, ...
著者Malhotra, N, Manmohan, S, Harlos, K, Melillo, B, Schreiber, S.L, Manickam, Y, Sharma, S.
登録日2020-04-21
公開日2020-11-04
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.997 Å)
主引用文献Structural basis of malaria parasite phenylalanine tRNA-synthetase inhibition by bicyclic azetidines.
Nat Commun, 12, 2021
5NJE
DownloadVisualize
BU of 5nje by Molmil
The structure of the polo-box domain (PBD) of polo-like kinase 1 (Plk1) in complex with Alpha-Bromo-3-Iodotoluene.
分子名称: Alpha-Bromo-3-Iodotoluene, Serine/threonine-protein kinase PLK1
著者Kunciw, D.L, Rossmann, M, Stokes, J.E, De Fusco, C, Spring, D.R, Hyvonen, M.
登録日2017-03-28
公開日2018-05-16
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.978 Å)
主引用文献A cryptic hydrophobic pocket in the polo-box domain of the polo-like kinase PLK1 regulates substrate recognition and mitotic chromosome segregation.
Sci Rep, 9, 2019
7BYY
DownloadVisualize
BU of 7byy by Molmil
Crystal structure of bacterial toxin
分子名称: Acetyltransferase
著者Zhang, C, Yashiro, Y, Tomita, K.
登録日2020-04-25
公開日2020-06-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.799 Å)
主引用文献Substrate specificities of Escherichia coli ItaT that acetylates aminoacyl-tRNAs.
Nucleic Acids Res., 48, 2020
6TE6
DownloadVisualize
BU of 6te6 by Molmil
Crystal structure of Dot1L in complex with an inhibitor (compound 3).
分子名称: Histone-lysine N-methyltransferase, H3 lysine-79 specific, ~{N}1-[(~{S})-(3-chlorophenyl)-pyridin-2-yl-methyl]-4-methylsulfonyl-~{N}2-pyrimidin-2-yl-benzene-1,2-diamine
著者Scheufler, C, Stauffer, F, Be, C, Moebitz, H.
登録日2019-11-11
公開日2019-12-11
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献New Potent DOT1L Inhibitors forin VivoEvaluation in Mouse.
Acs Med.Chem.Lett., 10, 2019
5H2I
DownloadVisualize
BU of 5h2i by Molmil
A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 110 ns after photoexcitation
分子名称: 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, DECANE, ...
著者Royant, A, Nango, E, Nakane, T, Tanaka, T, Arima, T, Neutze, R, Iwata, S.
登録日2016-10-15
公開日2016-12-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献A three-dimensional movie of structural changes in bacteriorhodopsin
Science, 354, 2016
5H4B
DownloadVisualize
BU of 5h4b by Molmil
Crystal structure of Cbln4
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Cerebellin-4
著者Zhong, C, Shen, J, Zhang, H, Ding, J.
登録日2016-10-31
公開日2017-09-13
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Cbln1 and Cbln4 Are Structurally Similar but Differ in GluD2 Binding Interactions.
Cell Rep, 20, 2017
5N47
DownloadVisualize
BU of 5n47 by Molmil
Structure of Anticalin N7E in complex with the three-domain fragment Fn7B8 of human oncofetal fibronectin
分子名称: Fibronectin, Neutrophil gelatinase-associated lipocalin
著者Schiefner, A, Skerra, A.
登録日2017-02-10
公開日2018-02-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Anticalins Reveal High Plasticity in the Mode of Complex Formation with a Common Tumor Antigen.
Structure, 26, 2018

224201

件を2024-08-28に公開中

PDB statisticsPDBj update infoContact PDBjnumon