PDB: 47120 件ウェブページステータス検索Chemie searchBIRD

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6E2X	Mechanism of cellular recognition by PCV2 分子名称: 2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, Capsid protein of PCV2 著者 Khayat, R, Dhindwal, S. 登録日 2018-07-12 公開日 2018-12-26 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Porcine Circovirus 2 Uses a Multitude of Weak Binding Sites To Interact with Heparan Sulfate, and the Interactions Do Not Follow the Symmetry of the Capsid. J.Virol., 93, 2019
6ENW	X-ray structure of Auoxo4-encapsulated horse spleen apoferritin 分子名称: CADMIUM ION, CHLORIDE ION, Ferritin light chain, ... 著者 Ferraro, G, Merlino, A. 登録日 2017-10-06 公開日 2017-12-13 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Ferritin nanocages loaded with gold ions induce oxidative stress and apoptosis in MCF-7 human breast cancer cells. Dalton Trans, 46, 2017
6EO5	Physcomitrella patens BBE-like 1 variant D396N 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, PpBBE-like 1 D396N 著者 Toplak, M, Winkler, A, Macheroux, P. 登録日 2017-10-09 公開日 2018-04-18 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 The single berberine bridge enzyme homolog of Physcomitrella patens is a cellobiose oxidase. FEBS J., 285, 2018
4LQ3	Crystal structure of human norovirus RNA-dependent RNA-polymerase bound to the inhibitor PPNDS 分子名称: 3-[(E)-{4-formyl-5-hydroxy-6-methyl-3-[(phosphonooxy)methyl]pyridin-2-yl}diazenyl]-7-nitronaphthalene-1,5-disulfonic acid, 5'-R(P*GP*G)-3', MAGNESIUM ION, ... 著者 Milani, M, Tarantino, D, Mastrangelo, E, Croci, R. 登録日 2013-07-17 公開日 2014-02-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Naphthalene-sulfonate inhibitors of human norovirus RNA-dependent RNA-polymerase. Antiviral Res., 102, 2014
6EOR	DPP9 - 1G244 分子名称: (2~{S})-2-azanyl-4-[4-[bis(4-fluorophenyl)methyl]piperazin-1-yl]-1-(1,3-dihydroisoindol-2-yl)butane-1,4-dione, Dipeptidyl peptidase 9 著者 Ross, B.R, Huber, R. 登録日 2017-10-10 公開日 2018-02-07 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structures and mechanism of dipeptidyl peptidases 8 and 9, important players in cellular homeostasis and cancer. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
4LYW	Crystal Structure of BRD4(1) bound to inhibitor XD14 分子名称: 4-acetyl-N-[5-(diethylsulfamoyl)-2-hydroxyphenyl]-3-ethyl-5-methyl-1H-pyrrole-2-carboxamide, Bromodomain-containing protein 4 著者 Wohlwend, D, Gerhardt, S, Einsle, O. 登録日 2013-07-31 公開日 2014-01-15 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 4-Acyl pyrroles: mimicking acetylated lysines in histone code reading. Angew.Chem.Int.Ed.Engl., 52, 2013
6E8N	Crystal structure of glycosylated human EPDR1 分子名称: Mammalian ependymin-related protein 1, NONAETHYLENE GLYCOL 著者 Wei, Y, Prive, G.G. 登録日 2018-07-30 公開日 2019-01-23 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Crystal structures of human lysosomal EPDR1 reveal homology with the superfamily of bacterial lipoprotein transporters. Commun Biol, 2, 2019
8SJM	[3T12] Self-assembling left-handed tensegrity triangle with 12 interjunction base pairs and R3 symmetry 分子名称: DNA (5'-D(*CP*AP*GP*CP*AP*TP*CP*GP*CP*CP*TP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*TP*CP*GP*CP*AP*TP*GP*TP*GP*GP*CP*GP*AP*TP*GP*C)-3'), DNA (5'-D(P*CP*GP*TP*GP*GP*AP*CP*AP*TP*GP*CP*GP*AP*G)-3'), ... 著者 Janowski, J, Vecchioni, S, Sha, R, Ohayon, Y.P. 登録日 2023-04-18 公開日 2024-04-24 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (8.08 Å) 主引用文献 Engineering tertiary chirality in helical biopolymers. Proc.Natl.Acad.Sci.USA, 121, 2024
6ERV	Crystal Structure of the Protein-Kinase A catalytic subunit from Criteculus Griseus in complex with compounds RKp013 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, cAMP-dependent protein kinase catalytic subunit alpha, cAMP-dependent protein kinase inhibitor 著者 Mueller, J.M, Heine, A, Klebe, G. 登録日 2017-10-19 公開日 2018-10-31 最終更新日 2019-05-15 実験手法 X-RAY DIFFRACTION (2.06 Å) 主引用文献 Conceptional Design of Self-Assembling Bisubstrate-like Inhibitors of Protein Kinase A Resulting in a Boronic Acid Glutamate Linkage Acs Omega, 2019
6E9D	Sub-2 Angstrom Ewald Curvature-Corrected Single-Particle Cryo-EM Reconstruction of AAV-2 L336C 分子名称: Capsid protein VP1 著者 Tan, Y.Z, Aiyer, S, Mietzsch, M, Hull, J.A, McKenna, R, Baker, T.S, Agbandje-McKenna, M, Lyumkis, D. 登録日 2018-07-31 公開日 2018-08-15 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (1.86 Å) 主引用文献 Sub-2 angstrom Ewald curvature corrected structure of an AAV2 capsid variant. Nat Commun, 9, 2018
4LZR	Crystal Structure of BRD4(1) bound to Colchicine 分子名称: Bromodomain-containing protein 4, N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide 著者 Wohlwend, D, Gerhardt, S, Einsle, O, Huegle, M. 登録日 2013-08-01 公開日 2014-01-15 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 4-Acyl pyrroles: mimicking acetylated lysines in histone code reading. Angew.Chem.Int.Ed.Engl., 52, 2013
8F6R	CryoEM structure of designed modular protein oligomer C6-79 分子名称: De novo designed oligomeric protein C6-79 著者 Redler, R.L, Edman, N.I, Baker, D, Ekiert, D, Bhabha, G. 登録日 2022-11-17 公開日 2023-11-29 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Modulation of FGF pathway signaling and vascular differentiation using designed oligomeric assemblies. Cell, 187, 2024
4LTQ	Bacterial sodium channel in low calcium, P42 space group 分子名称: Ion transport protein 著者 Shaya, D, Findeisen, F, Abderemane-Ali, F, Arrigoni, C, Wong, S, Reddy Nurva, S, Loussouarn, G, Minor, D.L. 登録日 2013-07-23 公開日 2013-10-23 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (5.5 Å) 主引用文献 Structure of a prokaryotic sodium channel pore reveals essential gating elements and an outer ion binding site common to eukaryotic channels. J.Mol.Biol., 426, 2014
8S3E	Structure of rabbit Slo1 in complex with gamma1/LRRC26 分子名称: (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE, CALCIUM ION, CHOLESTEROL, ... 著者 Redhardt, M, Raunser, S, Raisch, T. 登録日 2024-02-20 公開日 2024-04-10 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (2.39 Å) 主引用文献 Cryo-EM structure of the Slo1 potassium channel with the auxiliary gamma 1 subunit suggests a mechanism for depolarization-independent activation. Febs Lett., 598, 2024
8F7I	The condensation domain of surfactin A synthetase C variant 18b in space group P43212 分子名称: GLYCEROL, Surfactin synthetase 著者 Frota, N.F, Pistofidis, A, Folger, I.B, Hilvert, D, Schmeing, M. 登録日 2022-11-18 公開日 2023-11-22 最終更新日 2024-06-12 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 High-throughput reprogramming of an NRPS condensation domain. Nat.Chem.Biol., 20, 2024
8F7F	The condensation domain of surfactin A synthetase C in space group P43212 分子名称: GLYCEROL, Surfactin synthetase 著者 Frota, N, Pistofidis, A, Folger, I.B, Hilvert, D, Schmeing, T.M. 登録日 2022-11-18 公開日 2023-11-22 最終更新日 2024-06-12 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 High-throughput reprogramming of an NRPS condensation domain. Nat.Chem.Biol., 20, 2024
6EDH	Taurine:2OG dioxygenase (TauD) bound to the vanadyl ion, taurine, and succinate 分子名称: 2-AMINOETHANESULFONIC ACID, ACETATE ION, Alpha-ketoglutarate-dependent taurine dioxygenase, ... 著者 Davis, K.M, Altmyer, M, Boal, A.K. 登録日 2018-08-09 公開日 2019-08-21 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.73000407 Å) 主引用文献 Structure of a Ferryl Mimic in the Archetypal Iron(II)- and 2-(Oxo)-glutarate-Dependent Dioxygenase, TauD. Biochemistry, 58, 2019
4M2Y	Structure of human DNA polymerase beta complexed with 8-BrG as the template base in a 1-nucleotide gapped DNA 分子名称: DNA polymerase beta, SODIUM ION, down-primer, ... 著者 Koag, M.C, Min, K, Monzingo, A.F, Lee, S. 登録日 2013-08-05 公開日 2014-01-22 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.27 Å) 主引用文献 Structural basis for promutagenicity of 8-halogenated Guanine. J.Biol.Chem., 289, 2014
8F6Q	CryoEM structure of designed modular protein oligomer C8-71 分子名称: C8-71 著者 Redler, R.L, Edman, N.I, Baker, D, Ekiert, D, Bhabha, G. 登録日 2022-11-17 公開日 2023-11-29 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Modulation of FGF pathway signaling and vascular differentiation using designed oligomeric assemblies. Biorxiv, 2023
6EEP	Crystal Structure of Ribose-5-phosphate Isomerase from Legionella pneumophila 分子名称: Ribose-5-phosphate isomerase A, SODIUM ION 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2018-08-15 公開日 2018-08-29 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Crystal Structure of Ribose-5-phosphate Isomerase from Legionella pneumophila to be published
6ERT	Crystal Structure of the Protein-Kinase A catalytic subunit from Criteculus Griseus in complex with compounds RKp193 and RKp117 分子名称: [2-[(4-isoquinolin-5-ylsulfonyl-1,4-diazepan-1-yl)methyl]phenyl]-tris(oxidanyl)boranuide, cAMP-dependent protein kinase catalytic subunit alpha, cAMP-dependent protein kinase inhibitor 著者 Mueller, J.M, Heine, A, Klebe, G. 登録日 2017-10-19 公開日 2018-10-31 最終更新日 2019-10-30 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Conceptional Design of Self-Assembling Bisubstrate-like Inhibitors of Protein Kinase A Resulting in a Boronic Acid Glutamate Linkage Acs Omega, 2019
4LWC	Fragment-Based Discovery of a Potent Inhibitor of Replication Protein A Protein-Protein Interactions 分子名称: 5-[3-chloro-4-({4-[1-(3,4-dichlorophenyl)-1H-pyrazol-5-yl]benzyl}carbamothioyl)phenyl]furan-2-carboxylic acid, Replication protein A 70 kDa DNA-binding subunit 著者 Feldkamp, M.D, Frank, A.O, Kennedy, J.P, Waterson, A.G, Olejnczak, E.O, Pelz, N.F, Patrone, J.D, Vangamudi, B, Camper, D.V, Rossanese, O.W, Fesik, S.W, Chazin, W.J. 登録日 2013-07-26 公開日 2013-12-11 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.61 Å) 主引用文献 Discovery of a potent inhibitor of replication protein a protein-protein interactions using a fragment-linking approach. J.Med.Chem., 56, 2013
7N8P	CLC-ec1 at pH 4.5 100mM Cl Swap 分子名称: H(+)/Cl(-) exchange transporter ClcA 著者 Fortea, E, Boudker, O, Accardi, A. 登録日 2021-06-15 公開日 2022-11-16 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.42 Å) 主引用文献 Structural basis of common gate activation in CLC transporters To Be Published
7N9W	CLC-ec1 pH 4.5 100mM Cl Twist1 分子名称: H(+)/Cl(-) exchange transporter ClcA 著者 Fortea, E, Boudker, O, Accardi, A. 登録日 2021-06-18 公開日 2022-11-16 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (4.16 Å) 主引用文献 Structural basis of common gate activation in CLC transporters To Be Published
6E2Z	Mechanism of cellular recognition by PCV2 分子名称: 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, Capsid protein of PCV2 著者 Khayat, R, Dhindwal, S. 登録日 2018-07-12 公開日 2018-12-26 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Porcine Circovirus 2 Uses a Multitude of Weak Binding Sites To Interact with Heparan Sulfate, and the Interactions Do Not Follow the Symmetry of the Capsid. J.Virol., 93, 2019

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