PDB: 47120 件ウェブページステータス検索Chemie searchBIRD

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7MJM	Cryo-EM structure of the SARS-CoV-2 N501Y mutant spike protein ectodomain bound to human ACE2 ectodomain 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... 著者 Zhu, X, Mannar, D, Srivastava, S.S, Berezuk, A.M, Demers, J.P, Saville, J.W, Leopold, K, Li, W, Dimitrov, D.S, Tuttle, K.S, Zhou, S, Chittori, S, Subramaniam, S. 登録日 2021-04-20 公開日 2021-05-12 実験手法 ELECTRON MICROSCOPY (2.83 Å) 主引用文献 Cryo-electron microscopy structures of the N501Y SARS-CoV-2 spike protein in complex with ACE2 and 2 potent neutralizing antibodies. Plos Biol., 19, 2021
2NYE	Crystal structure of the Bateman2 domain of yeast Snf4 分子名称: Nuclear protein SNF4 著者 Rudolph, M.J, Amodeo, G.A, Iram, S, Hong, S, Pirino, G, Carlson, M, Tong, L. 登録日 2006-11-20 公開日 2006-12-12 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of the Bateman2 domain of yeast Snf4: dimeric association and relevance for AMP binding. Structure, 15, 2007
3B18	Rv0098 of Mycobacterium tuberculosis with ordered loop between beta-4 and beta-5 分子名称: LAURIC ACID, Uncharacterized protein Rv0098/MT0107 著者 Maity, K, Suguna, K. 登録日 2011-06-26 公開日 2012-06-06 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Insights into the substrate specificity of a thioesterase Rv0098 of mycobacterium tuberculosis through X-ray crystallographic and molecular dynamics studies. J.Biomol.Struct.Dyn., 29, 2012
2NYM	Crystal Structure of Protein Phosphatase 2A (PP2A) with C-terminus truncated catalytic subunit 分子名称: MANGANESE (II) ION, Protein phosphatase 2, Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform, ... 著者 Chen, Y, Xing, Y, Xu, Y, Chao, Y, Lin, Z, Jeffrey, P.D, Shi, Y. 登録日 2006-11-21 公開日 2006-12-12 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structure of the Protein Phosphatase 2A Holoenzyme. Cell(Cambridge,Mass.), 127, 2006
5L9C	Crystal structure of an endoglucanase from Penicillium verruculosum in complex with cellobiose 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, ... 著者 Nemashkalov, V, Vakhrusheva, A, Tishchenko, S, Gabdulkhakov, A, Kravchenko, O, Gusakov, A, Sinisyn, A. 登録日 2016-06-10 公開日 2017-06-28 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Crystal structure of an endoglucanase from Penicillium verruculosum in complex with cellobiose to be published
5L8G	Crystal structure of Rhodospirillum rubrum Rru_A0973 mutant H65A 分子名称: CALCIUM ION, Uncharacterized protein 著者 He, D, Hughes, S, Vanden-Hehir, S, Georgiev, A, Altenbach, K, Tarrant, E, Mackay, C.L, Waldron, K.J, Clarke, D.J, Marles-Wright, J. 登録日 2016-06-07 公開日 2016-08-31 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.974 Å) 主引用文献 Structural characterization of encapsulated ferritin provides insight into iron storage in bacterial nanocompartments. Elife, 5, 2016
5LB6	HIF prolyl hydroxylase 2 (PHD2/EGLN1) R371H variant in complex with Mn(II) and N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/UN9) 分子名称: Egl nine homolog 1, GLYCEROL, MANGANESE (II) ION, ... 著者 Chowdhury, R, Schofield, C.J. 登録日 2016-06-15 公開日 2016-08-31 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structural basis for oxygen degradation domain selectivity of the HIF prolyl hydroxylases. Nat Commun, 7, 2016
3KCX	Factor inhibiting HIF-1 alpha in complex with Clioquinol 分子名称: 5-chloro-7-iodoquinolin-8-ol, FE (II) ION, GLYCEROL, ... 著者 Moon, H, Han, S, Choe, J. 登録日 2009-10-22 公開日 2010-04-28 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structures of human FIH-1 in complex with quinol family inhibitors Mol.Cells, 29, 2010
5LBE	HIF prolyl hydroxylase 2 (PHD2/EGLN1) G294E variant in complex with Mn(II) and N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/FG2216) 分子名称: BICARBONATE ION, Egl nine homolog 1, MANGANESE (II) ION, ... 著者 Chowdhury, R, Schofield, C.J. 登録日 2016-06-15 公開日 2016-08-31 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.749 Å) 主引用文献 Structural basis for oxygen degradation domain selectivity of the HIF prolyl hydroxylases. Nat Commun, 7, 2016
5LBC	HIF prolyl hydroxylase 2 (PHD2/EGLN1) I280V/R281L/I292V variant in complex with Mn(II) and N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/FG2216) 分子名称: BICARBONATE ION, CHLORIDE ION, Egl nine homolog 1, ... 著者 Chowdhury, R, Schofield, C.J. 登録日 2016-06-15 公開日 2016-08-31 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.816 Å) 主引用文献 Structural basis for oxygen degradation domain selectivity of the HIF prolyl hydroxylases. Nat Commun, 7, 2016
3KD9	Crystal structure of pyridine nucleotide disulfide oxidoreductase from Pyrococcus horikoshii 分子名称: Coenzyme A disulfide reductase, GLYCEROL 著者 Agarwal, R, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC) 登録日 2009-10-22 公開日 2009-11-10 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Crystal structure of pyridine nucleotide disulfide oxidoreductase from Pyrococcus horikoshii To be Published
7L6B	The empty AAV12 capsid 分子名称: VP1 著者 Mietzsch, M, Agbandje-McKenna, M. 登録日 2020-12-23 公開日 2021-02-03 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (2.54 Å) 主引用文献 Completion of the AAV Structural Atlas: Serotype Capsid Structures Reveals Clade-Specific Features. Viruses, 13, 2021
2O9K	WDR5 in Complex with Dimethylated H3K4 Peptide 分子名称: H3 HISTONE, WD repeat protein 5 著者 Min, J.R, Schuetz, A, Allali-Hassani, A, Martin, F, Loppnau, P, Vedadi, M, Weigelt, J, Sundstrom, M, Edwards, A.M, Arrowsmith, C.H, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC) 登録日 2006-12-13 公開日 2006-12-19 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural Basis for Molecular Recognition and Presentation of Histone H3 by Wdr5. Embo J., 25, 2006
3B4R	Site-2 Protease from Methanocaldococcus jannaschii 分子名称: Putative zinc metalloprotease MJ0392, ZINC ION 著者 Jeffrey, P.D, Feng, L, Yan, H, Wu, Z, Yan, N, Wang, Z, Shi, Y. 登録日 2007-10-24 公開日 2008-01-15 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Structure of a site-2 protease family intramembrane metalloprotease. Science, 318, 2007
5KJ8	Structure of the Ca2+-bound synaptotagmin-1 SNARE complex (long unit cell form) - from synchrotron diffraction 分子名称: CALCIUM ION, Synaptosomal-associated protein 25, Synaptotagmin-1, ... 著者 Lyubimov, A.Y, Uervirojnangkoorn, M, Zhou, Q, Zhao, M, Sauter, N.K, Brewster, A.S, Weis, W.I, Brunger, A.T. 登録日 2016-06-17 公開日 2016-10-19 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (4.1 Å) 主引用文献 Advances in X-ray free electron laser (XFEL) diffraction data processing applied to the crystal structure of the synaptotagmin-1 / SNARE complex. Elife, 5, 2016
7DQC	Crystal structure of nucleotide-free mutant A(S23C)3B(N64C)3 complex from Enterococcus hirae V-ATPase 分子名称: GLYCEROL, V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B 著者 Maruyama, S, Suzuki, K, Mizutani, K, Imai, F.L, Ishizuka-Katsura, Y, Shirouzu, M, Murata, M. 登録日 2020-12-23 公開日 2021-12-29 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.706 Å) 主引用文献 The combination of high-speed AFM and X-ray crystallography reveals rotary catalytic mechanism of shaftless V1-ATPase To Be Published
3KCF	Crystal structure of TGFbRI complexed with a pyrazolone inhibitor 分子名称: 4-[3-(methoxymethyl)phenyl]-1,2-dimethyl-5-quinoxalin-6-yl-1,2-dihydro-3H-pyrazol-3-one, PHOSPHATE ION, TGF-beta receptor type-1 著者 Boriack-Sjodin, P.A. 登録日 2009-10-21 公開日 2009-12-22 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Pyrazolone based TGFbetaR1 kinase inhibitors. Bioorg.Med.Chem.Lett., 20, 2010
3B5D	EmrE multidrug transporter in complex with TPP, C2 crystal form 分子名称: Multidrug transporter emrE, TETRAPHENYLPHOSPHONIUM 著者 Chang, G, Chen, Y.J. 登録日 2007-10-25 公開日 2007-12-04 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (3.8 Å) 主引用文献 X-ray structure of EmrE supports dual topology model. Proc.Natl.Acad.Sci.Usa, 104, 2007
2O4L	Crystal Structure of HIV-1 Protease (Q7K, I50V) in Complex with Tipranavir 分子名称: CHLORIDE ION, GLYCEROL, N-(3-{(1R)-1-[(6R)-4-HYDROXY-2-OXO-6-PHENETHYL-6-PROPYL-5,6-DIHYDRO-2H-PYRAN-3-YL]PROPYL}PHENYL)-5-(TRIFLUOROMETHYL)-2-PYRIDINESULFONAMIDE, ... 著者 Armstrong, A.A, Muzammil, S, Jakalian, A, Bonneau, P.R, Schmelmer, V, Freire, E, Amzel, L.M. 登録日 2006-12-04 公開日 2006-12-12 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.33 Å) 主引用文献 Unique thermodynamic response of tipranavir to human immunodeficiency virus type 1 protease drug resistance mutations. J.Virol., 81, 2007
7KJ3	SARS-CoV-2 Spike Glycoprotein with two ACE2 Bound 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ... 著者 Zhang, J, Xiao, T.S, Cai, Y.F, Chen, B. 登録日 2020-10-25 公開日 2020-11-11 最終更新日 2021-02-24 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 A trimeric human angiotensin-converting enzyme 2 as an anti-SARS-CoV-2 agent. Nat.Struct.Mol.Biol., 28, 2021
7KNH	Cryo-EM Structure of Double ACE2-Bound SARS-CoV-2 Trimer Spike at pH 5.5 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ... 著者 Gorman, J, Rapp, M, Kwong, P.D, Shapiro, L. 登録日 2020-11-04 公開日 2020-12-16 最終更新日 2021-12-15 実験手法 ELECTRON MICROSCOPY (3.74 Å) 主引用文献 Cryo-EM Structures of SARS-CoV-2 Spike without and with ACE2 Reveal a pH-Dependent Switch to Mediate Endosomal Positioning of Receptor-Binding Domains. Cell Host Microbe, 28, 2020
3KCY	Factor inhibiting HIF-1 alpha in complex with 8-hydroxyquinoline 分子名称: FE (II) ION, Hypoxia-inducible factor 1-alpha inhibitor, SULFATE ION, ... 著者 Moon, H, Han, S, Choe, J. 登録日 2009-10-22 公開日 2010-04-28 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.59 Å) 主引用文献 Crystal structures of human FIH-1 in complex with quinol family inhibitors Mol.Cells, 29, 2010
7DH1	The structure of the Arabidopsis thaliana guanosine deaminase in reaction with N2-Methylguanosine 分子名称: 2,3-dihydroxanthosine, Guanosine deaminase, ZINC ION 著者 Xie, W, Jia, Q, Zeng, H. 登録日 2020-11-12 公開日 2022-02-02 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Substrate Specificity of GSDA Revealed by Cocrystal Structures and Binding Studies. Int J Mol Sci, 23, 2022
2JU2	Minimized mean solution structure of the acyl carrier protein domain from module 2 of 6-deoxyerythronolide B synthase (DEBS) 分子名称: Erythronolide synthase 著者 Alekseyev, V.Y, Liu, C.W, Puglisi, J.D, Khosla, C. 登録日 2007-08-12 公開日 2007-10-02 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure and proposed domain domain recognition interface of an acyl carrier protein domain from a modular polyketide synthase. Protein Sci., 16, 2007
7D66	Crystal structure of retroviral protease-like domain of Ddi1 from Toxoplasma gondii 分子名称: GLYCEROL, Ubiquitin family protein 著者 Biswas, I.B, Killivalavan, A.K, Suguna, K.S. 登録日 2020-09-29 公開日 2022-02-09 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.126 Å) 主引用文献 Structural and functional insights into the DNA damage-inducible protein 1 (Ddi1) from protozoa. Curr Res Struct Biol, 4, 2022

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