Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 45 results

4RQF
DownloadVisualize
BU of 4rqf by Molmil
human Seryl-tRNA synthetase dimer complexed with one molecule of tRNAsec
Descriptor: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, SERINE, Serine--tRNA ligase, ...
Authors:Xie, W, Wang, C, Guo, Y, Tian, Q, Jia, Q.
Deposit date:2014-11-03
Release date:2015-11-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.503 Å)
Cite:SerRS-tRNASec complex structures reveal mechanism of the first step in selenocysteine biosynthesis.
Nucleic Acids Res., 43, 2015
4RQE
DownloadVisualize
BU of 4rqe by Molmil
human Seryl-tRNA synthetase dimer complexed with two molecules of tRNAsec
Descriptor: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, SERINE, Serine--tRNA ligase, ...
Authors:Xie, W, Wang, C, Guo, Y, Tian, Q, Jia, Q.
Deposit date:2014-11-03
Release date:2015-11-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (4 Å)
Cite:SerRS-tRNASec complex structures reveal mechanism of the first step in selenocysteine biosynthesis.
Nucleic Acids Res., 43, 2015
5HJJ
DownloadVisualize
BU of 5hjj by Molmil
Crystal Structure of Pyrococcus abyssi Trm5a
Descriptor: tRNA (guanine(37)-N1)-methyltransferase Trm5a
Authors:Xie, W, Wang, C, Jia, Q.
Deposit date:2016-01-13
Release date:2016-10-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of the bifunctional tRNA methyltransferase Trm5a
Sci Rep, 6, 2016
5HJI
DownloadVisualize
BU of 5hji by Molmil
Crystal Structure of Pyrococcus abyssi Trm5a complexed with adenosine
Descriptor: ADENOSINE, tRNA (guanine(37)-N1)-methyltransferase Trm5a
Authors:Xie, W, Wang, C, Jia, Q.
Deposit date:2016-01-13
Release date:2016-10-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of the bifunctional tRNA methyltransferase Trm5a
Sci Rep, 6, 2016
5HJK
DownloadVisualize
BU of 5hjk by Molmil
Crystal Structure of Pyrococcus abyssi Trm5a complexed with SAH
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, tRNA (guanine(37)-N1)-methyltransferase Trm5a
Authors:Xie, W, Wang, C, Jia, Q.
Deposit date:2016-01-13
Release date:2016-10-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of the bifunctional tRNA methyltransferase Trm5a
Sci Rep, 6, 2016
5HJM
DownloadVisualize
BU of 5hjm by Molmil
Crystal Structure of Pyrococcus abyssi Trm5a complexed with MTA
Descriptor: 5'-DEOXY-5'-METHYLTHIOADENOSINE, ACETATE ION, HOMOSERINE LACTONE, ...
Authors:Xie, W, Wang, C, Jia, Q.
Deposit date:2016-01-13
Release date:2016-10-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.762 Å)
Cite:Crystal structures of the bifunctional tRNA methyltransferase Trm5a
Sci Rep, 6, 2016
1LZZ
DownloadVisualize
BU of 1lzz by Molmil
Rat neuronal NOS heme domain with N-isopropyl-N'-hydroxyguanidine bound
Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, N-ISOPROPYL-N'-HYDROXYGUANIDINE, ...
Authors:Li, H, Shimizu, H, Flinspach, M, Jamal, J, Yang, W, Xian, M, Cai, T, Wen, E.Z, Jia, Q, Wang, P.G, Poulos, T.L.
Deposit date:2002-06-11
Release date:2002-11-27
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The Novel Binding Mode of N-Alkyl-N'-Hydroxyguanidine to Neuronal Nitric Oxide Synthase Provides Mechanistic Insights into NO Biosynthesis
Biochemistry, 41, 2002
1LZX
DownloadVisualize
BU of 1lzx by Molmil
Rat neuronal NOS heme domain with NG-hydroxy-L-arginine bound
Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, N-OMEGA-HYDROXY-L-ARGININE, ...
Authors:Li, H, Shimizu, H, Flinspach, M, Jamal, J, Yang, W, Xian, M, Cai, T, Wen, E.Z, Jia, Q, Wang, P.G, Poulos, T.L.
Deposit date:2002-06-11
Release date:2002-11-27
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Novel Binding Mode of N-Alkyl-N'-Hydroxyguanidine to Neuronal Nitric Oxide Synthase Provides Mechanistic Insights into NO Biosynthesis
Biochemistry, 41, 2002
1M00
DownloadVisualize
BU of 1m00 by Molmil
Rat neuronal NOS heme domain with N-butyl-N'-hydroxyguanidine bound
Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, N-BUTYL-N'-HYDROXYGUANIDINE, ...
Authors:Li, H, Shimizu, H, Flinspach, M, Jamal, J, Yang, W, Xian, M, Cai, T, Wen, E.Z, Jia, Q, Wang, P.G, Poulos, T.L.
Deposit date:2002-06-11
Release date:2002-11-27
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The Novel Binding Mode of N-Alkyl-N'-Hydroxyguanidine to Neuronal Nitric Oxide Synthase Provides Mechanistic Insights into NO Biosynthesis
Biochemistry, 41, 2002
8IXJ
DownloadVisualize
BU of 8ixj by Molmil
Middle segment of the bacteriophage M13 mini variant
Descriptor: Capsid protein G8P
Authors:Xiang, Y, Jia, Q.
Deposit date:2023-04-01
Release date:2023-08-16
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Cryo-EM structure of a bacteriophage M13 mini variant.
Nat Commun, 14, 2023
8IXL
DownloadVisualize
BU of 8ixl by Molmil
top segment of the bacteriophage M13 mini variant
Descriptor: Capsid protein G8P, Tail virion protein G7P, Tail virion protein G9P
Authors:Xiang, Y, Jia, Q.
Deposit date:2023-04-01
Release date:2023-09-13
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM structure of a bacteriophage M13 mini variant.
Nat Commun, 14, 2023
8IXK
DownloadVisualize
BU of 8ixk by Molmil
bottom segment of the bacteriophage M13 mini variant
Descriptor: Attachment protein G3P, Capsid protein G8P, Head virion protein G6P
Authors:Xiang, Y, Jia, Q.
Deposit date:2023-04-01
Release date:2023-09-13
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structure of a bacteriophage M13 mini variant.
Nat Commun, 14, 2023
8JWT
DownloadVisualize
BU of 8jwt by Molmil
Asymmetric middle segment of the bacteriophage M13 mini variant
Descriptor: Capsid protein G8P
Authors:Xiang, Y, Jia, Q.
Deposit date:2023-06-29
Release date:2023-08-16
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM structure of a bacteriophage M13 mini variant.
Nat Commun, 14, 2023
8JWX
DownloadVisualize
BU of 8jwx by Molmil
bottom segment of the bacteriophage M13 mini variant
Descriptor: Attachment protein G3P, Capsid protein G8P, Head virion protein G6P
Authors:Xiang, Y, Jia, Q.
Deposit date:2023-06-29
Release date:2024-01-03
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structure of a bacteriophage M13 mini variant
To Be Published
8JWW
DownloadVisualize
BU of 8jww by Molmil
top segment of the bacteriophage M13 mini variant
Descriptor: Capsid protein G8P, Tail virion protein G7P, Tail virion protein G9P
Authors:Xiang, Y, Jia, Q.
Deposit date:2023-06-29
Release date:2024-01-03
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM structure of a bacteriophage M13 mini variant
To Be Published
5WT3
DownloadVisualize
BU of 5wt3 by Molmil
Pyrococcus abyssi methyltransferase PaTrm5a bound by MTA and cognate tRNA
Descriptor: 5'-DEOXY-5'-METHYLTHIOADENOSINE, RNA (73-MER), tRNA (guanine(37)-N1)-methyltransferase Trm5a
Authors:Xie, W, Wang, C, Jia, Q.
Deposit date:2016-12-09
Release date:2017-12-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.204 Å)
Cite:Structural insight into the methyltransfer mechanism of the bifunctional Trm5.
Sci Adv, 3, 2017
5WT1
DownloadVisualize
BU of 5wt1 by Molmil
Pyrococcus abyssi methyltransferase PaTrm5a bound by SAH and cognate tRNA
Descriptor: RNA (76-MER), S-ADENOSYL-L-HOMOCYSTEINE, tRNA (guanine(37)-N1)-methyltransferase Trm5a
Authors:Xie, W, Wang, C, Jia, Q.
Deposit date:2016-12-09
Release date:2017-12-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.598 Å)
Cite:Structural insight into the methyltransfer mechanism of the bifunctional Trm5.
Sci Adv, 3, 2017
5Y9O
DownloadVisualize
BU of 5y9o by Molmil
The apo structure of Legionella pneumophila WipA
Descriptor: IODIDE ION, WipA
Authors:Xie, W, Jia, Q.
Deposit date:2017-08-26
Release date:2018-05-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.554 Å)
Cite:Legionella pneumophila effector WipA, a bacterial PPP protein phosphatase with PTP activity
Acta Biochim. Biophys. Sin. (Shanghai), 50, 2018
6AYF
DownloadVisualize
BU of 6ayf by Molmil
TRPML3/ML-SA1 complex at pH 7.4
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Mucolipin-3
Authors:Zhou, X, Li, M, Su, D, Jia, Q, Li, H, Li, X, Yang, J.
Deposit date:2017-09-08
Release date:2017-11-08
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.62 Å)
Cite:Cryo-EM structures of the human endolysosomal TRPML3 channel in three distinct states.
Nat. Struct. Mol. Biol., 24, 2017
6AYG
DownloadVisualize
BU of 6ayg by Molmil
Human Apo-TRPML3 channel at pH 4.8
Descriptor: Mucolipin-3
Authors:Zhou, X, Li, M, Su, D, Jia, Q, Li, H, Li, X, Yang, J.
Deposit date:2017-09-08
Release date:2017-11-08
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.65 Å)
Cite:Cryo-EM structures of the human endolysosomal TRPML3 channel in three distinct states.
Nat. Struct. Mol. Biol., 24, 2017
6AYE
DownloadVisualize
BU of 6aye by Molmil
Human apo-TRPML3 channel at pH 7.4
Descriptor: Mucolipin-3
Authors:Zhou, X, Li, M, Su, D, Jia, Q, Li, H, Li, X, Yang, J.
Deposit date:2017-09-08
Release date:2017-11-08
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.06 Å)
Cite:Cryo-EM structures of the human endolysosomal TRPML3 channel in three distinct states.
Nat. Struct. Mol. Biol., 24, 2017
6IJP
DownloadVisualize
BU of 6ijp by Molmil
The structure of the ADAL-IMP complex
Descriptor: Adenosine/AMP deaminase family protein, INOSINIC ACID, ZINC ION
Authors:Xie, W, Jia, Q.
Deposit date:2018-10-11
Release date:2019-02-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Alternative conformation induced by substrate binding for Arabidopsis thalianaN6-methyl-AMP deaminase.
Nucleic Acids Res., 47, 2019
6IJN
DownloadVisualize
BU of 6ijn by Molmil
The D295N mutant of the N6-methyl-AMP deaminase from Arabidopsis thaliana complexed with N6m-AMP
Descriptor: Adenosine/AMP deaminase family protein, N6-METHYLADENOSINE-5'-MONOPHOSPHATE
Authors:Xie, W, Jia, Q.
Deposit date:2018-10-10
Release date:2019-02-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Alternative conformation induced by substrate binding for Arabidopsis thalianaN6-methyl-AMP deaminase.
Nucleic Acids Res., 47, 2019
6IJM
DownloadVisualize
BU of 6ijm by Molmil
Apo structure of the N6-methyl-AMP Deaminase from Arabidopsis thaliana
Descriptor: Adenosine/AMP deaminase family protein, ZINC ION
Authors:Xie, W, Jia, Q.
Deposit date:2018-10-10
Release date:2019-02-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.016 Å)
Cite:Alternative conformation induced by substrate binding for Arabidopsis thalianaN6-methyl-AMP deaminase.
Nucleic Acids Res., 47, 2019
7DCR
DownloadVisualize
BU of 7dcr by Molmil
cryo-EM structure of the DEAH-box helicase Prp2 in complex with its coactivator Spp2
Descriptor: PRP2 isoform 1, Pre-mRNA-splicing factor SPP2
Authors:Bai, R, Wan, R, Yan, C, Jia, Q, Zhang, P, Lei, J, Shi, Y.
Deposit date:2020-10-26
Release date:2021-01-06
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Mechanism of spliceosome remodeling by the ATPase/helicase Prp2 and its coactivator Spp2.
Science, 371, 2021

 

12>

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon