PDB: 47120 件ウェブページステータス検索Chemie searchBIRD

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5M24	RARg mutant-S371E 分子名称: (9cis)-retinoic acid, CHLORIDE ION, DODECYL-ALPHA-D-MALTOSIDE, ... 著者 Rochel, N, Sirigu, S. 登録日 2016-10-11 公開日 2017-09-20 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.69 Å) 主引用文献 Allosteric Regulation in the Ligand Binding Domain of Retinoic Acid Receptor gamma. PLoS ONE, 12, 2017
7USP	Crystal Structure of Caspase-3 with Peptide Inhibitor AcITV(Orn)D-CHO 分子名称: Caspase-3 subunit p12, Caspase-3 subunit p17, Peptide Inhibitor AcITV(Orn)D-CHO 著者 Fuller, J.L, Finzel, B.C. 登録日 2022-04-25 公開日 2022-06-01 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Characterization of caspase-2 inhibitors based on specific sites of caspase-2-mediated proteolysis. Arch Pharm, 355, 2022
7LR9	Crystal structure of KPC-2 S70G/T215P mutant with hydrolyzed imipenem 分子名称: (2R)-2-[(2S,3R)-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-(2-methanimidamidoethylsulfanyl)-2,3-dihydro-1H-pyrrole -5-carboxylic acid, Carbapenem-hydrolyzing beta-lactamase KPC 著者 Furey, I, Palzkill, T, Hu, L, Prasad, B.V.V. 登録日 2021-02-16 公開日 2022-08-10 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.47 Å) 主引用文献 Crystal structure of KPC-2 T215P mutant To Be Published
7BB0	Crystal structure of the cAMP-dependent protein kinase A cocrystallized with NAT22-366511 and PKI (5-24) 分子名称: (R)-3,3-dimethyl-5-oxo-5-(6-(3-(pyridin-4-yl)-1,2,4-oxadiazol-5-yl)-1,4,6,7-tetrahydro-5H-imidazo[4,5-c]pyridin-5-yl)pentanoic acid, cAMP-dependent protein kinase catalytic subunit alpha, cAMP-dependent protein kinase inhibitor alpha 著者 Oebbeke, M, Mueller, J, Glinca, S, Heine, A, Klebe, G. 登録日 2020-12-16 公開日 2022-01-12 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Crystal structure of the cAMP-dependent protein kinase A cocrystallized with NAT22-366511 and PKI (5-24) To Be Published
5M4F	Complex structure of human protein kinase CK2 catalytic subunit with the inhibitor 4'-carboxy-6,8-chloro-flavonol (FLC21) crystallized under low-salt conditions 分子名称: 4-[6,8-bis(chloranyl)-3-oxidanyl-4-oxidanylidene-chromen-2-yl]benzoic acid, CHLORIDE ION, Casein kinase II subunit alpha, ... 著者 Niefind, K, Bischoff, N, Yarmoluk, S.M, Bdzhola, V.G, Golub, A.G, Balanda, A.O, Prykhod'ko, A.O. 登録日 2016-10-18 公開日 2017-01-18 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.519 Å) 主引用文献 Structural Hypervariability of the Two Human Protein Kinase CK2 Catalytic Subunit Paralogs Revealed by Complex Structures with a Flavonol- and a Thieno[2,3-d]pyrimidine-Based Inhibitor. Pharmaceuticals, 10, 2017
7UBU	Crystal structure of ZMET2 in complex with hemimethylated CAG DNA and a histone H3Kc9me2 peptide 分子名称: 5MC SSDNA, C49 SSDNA, DNA (cytosine-5)-methyltransferase 1, ... 著者 Fang, J, Song, J. 登録日 2022-03-15 公開日 2022-06-08 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.39 Å) 主引用文献 Mechanistic basis for maintenance of CHG DNA methylation in plants. Nat Commun, 13, 2022
2NS8	How an in vitro selected peptide mimics the antibiotic tetracycline to induce TET repressor 分子名称: 16 residue peptide Tip (Transcription inducing peptide), Tetracycline repressor protein 著者 Luckner, S.R, Klotzsche, M, Berens, C, Hillen, W, Muller, Y.A. 登録日 2006-11-03 公開日 2007-07-24 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 How an agonist peptide mimics the antibiotic tetracycline to induce Tet-repressor J.Mol.Biol., 368, 2007
7UGG	Cryo-EM structure of TRPV3 in complex with the anesthetic dyclonine 分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, Dyclonine, SODIUM ION, ... 著者 Neuberger, A, Nadezhdin, K.D, Sobolevsky, A.I. 登録日 2022-03-24 公開日 2022-06-08 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (3.16 Å) 主引用文献 Structural mechanism of TRPV3 channel inhibition by the anesthetic dyclonine. Nat Commun, 13, 2022
7R5Z	Monocot chimeric jacalin JAC1 from Oryza sativa: dirigent domain (crystal form 1) 分子名称: CALCIUM ION, CHLORIDE ION, Dirigent protein 著者 Huwa, N, Classen, T, Weiergraeber, O.H. 登録日 2022-02-12 公開日 2022-05-04 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 The Crystal Structure of the Defense Conferring Rice Protein Os JAC1 Reveals a Carbohydrate Binding Site on the Dirigent-like Domain. Biomolecules, 12, 2022
5M1W	Structure of a stable G-hairpin 分子名称: DNA (5'-D(*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*G)-3') 著者 Gajarsky, M, Zivkovic, M.L, Stadlbauer, P, Pagano, B, Fiala, R, Amato, J, Tomaska, L, Sponer, J, Plavec, J, Trantirek, L. 登録日 2016-10-11 公開日 2017-03-01 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structure of a Stable G-Hairpin. J. Am. Chem. Soc., 139, 2017
3HSO	Ternary structure of neuronal nitric oxide synthase with NHA and NO bound(1) 分子名称: 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, N-OMEGA-HYDROXY-L-ARGININE, ... 著者 Doukov, T, Li, H, Soltis, M, Poulos, T.L. 登録日 2009-06-10 公開日 2009-10-20 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.02 Å) 主引用文献 Single crystal structural and absorption spectral characterizations of nitric oxide synthase complexed with N(omega)-hydroxy-L-arginine and diatomic ligands. Biochemistry, 48, 2009
7UE9	Structure of anti-C3d Fab(3d8b) in complex with C3d 分子名称: Complement C3dg fragment, Fab heavy chain, Fab light chain, ... 著者 Olland, A.M, White, A, Suto, R.K. 登録日 2022-03-21 公開日 2022-06-08 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Development and Optimization of Bifunctional Fusion Proteins to Locally Modulate Complement Activation in Diseased Tissue. Front Immunol, 13, 2022
7D6R	Crystal structure of the Stx2a complexed with MMA betaAla peptide 分子名称: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, MMA betaAla peptide, Shiga toxin 2 B subunit, ... 著者 Takahashi, M, Tamada, M, Hibino, M, Senda, M, Okuda, A, Miyazawa, A, Senda, T, Nishikawa, K. 登録日 2020-10-01 公開日 2021-04-14 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Identification of a peptide motif that potently inhibits two functionally distinct subunits of Shiga toxin. Commun Biol, 4, 2021
7BE8	Escherichia coli YtfE (Mn) 分子名称: GLYCEROL, Iron-sulfur cluster repair protein YtfE, MANGANESE (II) ION, ... 著者 Silva, L.S.O, Matias, P.M, Romao, C.V, Saraiva, L.M. 登録日 2020-12-22 公開日 2022-01-12 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.02 Å) 主引用文献 Repair of Iron Center Proteins-A Different Class of Hemerythrin-like Proteins. Molecules, 27, 2022
3APR	BINDING OF A REDUCED PEPTIDE INHIBITOR TO THE ASPARTIC PROTEINASE FROM RHIZOPUS CHINENSIS. IMPLICATIONS FOR A MECHANISM OF ACTION 分子名称: REDUCED PEPTIDE INHIBITOR, RHIZOPUSPEPSIN 著者 Suguna, K, Davies, D.R. 登録日 1987-06-22 公開日 1988-01-16 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Binding of a reduced peptide inhibitor to the aspartic proteinase from Rhizopus chinensis: implications for a mechanism of action. Proc.Natl.Acad.Sci.USA, 84, 1987
3HTA	Crystal structure of multidrug binding protein EbrR complexed with imidazole 分子名称: EbrA repressor, IMIDAZOLE 著者 Dong, J, Ni, L, Schumacher, M, Brennan, R. 登録日 2009-06-11 公開日 2010-07-14 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural plasticity is key to multiple ligand binding by the multidrug binding regulator EbrR To be Published
5M47	Crystal structure of DapF from Corynebacterium glutamicum in complex with D,L-diaminopimelate 分子名称: 2,6-DIAMINOPIMELIC ACID, Diaminopimelate epimerase 著者 Sagong, H.-Y, Kim, K.-J. 登録日 2016-10-18 公開日 2016-11-02 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.59 Å) 主引用文献 Structural basis for redox sensitivity in Corynebacterium glutamicum diaminopimelate epimerase: an enzyme involved in l-lysine biosynthesis. Sci Rep, 7, 2017
3ASP	Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with A-antigen 分子名称: Capsid protein, SODIUM ION, alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose 著者 Kubota, T, Kumagai, A, Itoh, H, Furukawa, S, Narimatsu, H, Wakita, T, Ishii, K, Takeda, N, Someya, Y, Shirato, H. 登録日 2010-12-17 公開日 2012-01-25 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structural basis for the recognition of Lewis antigens by genogroup I norovirus J.Virol., 86, 2012
5M4I	Complex structure of human protein kinase CK2 catalytic subunit with the inhibitor 4'-carboxy-6,8-chloro-flavonol (FLC21) crystallized under high-salt conditions 分子名称: 4-[6,8-bis(chloranyl)-3-oxidanyl-4-oxidanylidene-chromen-2-yl]benzoic acid, CHLORIDE ION, Casein kinase II subunit alpha 著者 Niefind, K, Bischoff, N, Yarmoluk, S.M, Bdzhola, V.G, Golub, A.G, Balanda, A.O, Prykhod'ko, A.O. 登録日 2016-10-18 公開日 2017-01-18 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.218 Å) 主引用文献 Structural Hypervariability of the Two Human Protein Kinase CK2 Catalytic Subunit Paralogs Revealed by Complex Structures with a Flavonol- and a Thieno[2,3-d]pyrimidine-Based Inhibitor. Pharmaceuticals, 10, 2017
2JRO	Solution NMR Structure of SO0334 from Shewanella oneidensis. Northeast Structural Genomics Target SoR75 分子名称: Uncharacterized protein 著者 Tang, Y, Wang, D, Nwosu, C, Cunningham, K, Xiao, R, Liu, J, Baran, M.C, Swapna, G, Acton, T.B, Rost, B, Montelione, G.T, Northeast Structural Genomics Consortium (NESG) 登録日 2007-06-28 公開日 2007-08-21 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution Structure of SO0334 from Shewanella oneidensis. To be Published
3APZ	Apo form of Arabidopsis medium/long-chain length prenyl pyrophosphate synthase 分子名称: Geranyl diphosphate synthase 著者 Hsieh, F.-L, Chang, T.-H, Ko, T.-P, Wang, A.H.-J. 登録日 2010-10-24 公開日 2011-01-19 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structure and mechanism of an Arabidopsis medium/long-chain-length prenyl pyrophosphate synthase Plant Physiol., 155, 2011
2NUX	2-keto-3-deoxygluconate aldolase from Sulfolobus acidocaldarius, native structure in p6522 at 2.5 A resolution 分子名称: 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate aldolase, MAGNESIUM ION 著者 van Eerde, A, Dijkstra, B.W. 登録日 2006-11-10 公開日 2007-04-10 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Biochemical and structural exploration of the catalytic capacity of Sulfolobus KDG aldolases Biochem.J., 403, 2007
7DBI	Crystal structure of the peroxisomal acyl-CoA hydrolase MpaH 分子名称: acyl-CoA hydrolase MpaH' 著者 Li, S.Y, You, C. 登録日 2020-10-20 公開日 2021-04-28 最終更新日 2021-10-13 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 Structural basis for substrate specificity of the peroxisomal acyl-CoA hydrolase MpaH' involved in mycophenolic acid biosynthesis. Febs J., 288, 2021
2NVA	The X-ray crystal structure of the Paramecium bursaria Chlorella virus arginine decarboxylase bound to agmatine 分子名称: (4-{[(4-{[AMINO(IMINO)METHYL]AMINO}BUTYL)AMINO]METHYL}-5-HYDROXY-6-METHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE, arginine decarboxylase, A207R protein 著者 Shah, R.H, Akella, R, Goldsmith, E, Phillips, M.A. 登録日 2006-11-11 公開日 2007-03-20 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 X-ray Structure of Paramecium bursaria Chlorella Virus Arginine Decarboxylase: Insight into the Structural Basis for Substrate Specificity. Biochemistry, 46, 2007
7B9P	Structure of Ribonucleotide reductase from Rhodobacter sphaeroides 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, MAGNESIUM ION, Vitamin B12-dependent ribonucleotide reductase 著者 Wilk, P, Feiler, C, Loderer, C, Kabinger, F. 登録日 2020-12-14 公開日 2022-01-12 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.646 Å) 主引用文献 HUG Domain Is Responsible for Active Dimer Stabilization in an NrdJd Ribonucleotide Reductase. Biochemistry, 61, 2022

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