3APZ
Apo form of Arabidopsis medium/long-chain length prenyl pyrophosphate synthase
Summary for 3APZ
| Entry DOI | 10.2210/pdb3apz/pdb |
| Related | 3AQ0 |
| Descriptor | Geranyl diphosphate synthase (2 entities in total) |
| Functional Keywords | prenyltransferase, all alpha-helices fold, chroloplast, transferase, isoprenoid biosynthetic process |
| Biological source | Arabidopsis thaliana (thale-cress) |
| Total number of polymer chains | 2 |
| Total formula weight | 76151.07 |
| Authors | Hsieh, F.-L.,Chang, T.-H.,Ko, T.-P.,Wang, A.H.-J. (deposition date: 2010-10-24, release date: 2011-01-19, Last modification date: 2023-11-01) |
| Primary citation | Hsieh, F.-L.,Chang, T.-H.,Ko, T.-P.,Wang, A.H.-J. Structure and mechanism of an Arabidopsis medium/long-chain-length prenyl pyrophosphate synthase Plant Physiol., 155:1079-1090, 2011 Cited by PubMed Abstract: Prenyltransferases (PTSs) are involved in the biosynthesis of terpenes with diverse functions. Here, a novel PTS from Arabidopsis (Arabidopsis thaliana) is identified as a trans-type polyprenyl pyrophosphate synthase (AtPPPS), which forms a trans-double bond during each homoallylic substrate condensation, rather than a homomeric C10-geranyl pyrophosphate synthase as originally proposed. Biochemical and genetic complementation analyses indicate that AtPPPS synthesizes C25 to C45 medium/long-chain products. Its close relationship to other long-chain PTSs is also uncovered by phylogenetic analysis. A mutant of contiguous surface polar residues was produced by replacing four charged surface amino acids with alanines to facilitate the crystallization of the enzyme. The crystal structures of AtPPPS determined here in apo and ligand-bound forms further reveal an active-site cavity sufficient to accommodate the medium/long-chain products. The two monomers in each dimer adopt different conformations at the entrance of the active site depending on the binding of substrates. Taken together, these results suggest that AtPPPS is endowed with a unique functionality among the known PTSs. PubMed: 21220764DOI: 10.1104/pp.110.168799 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (2.6 Å) |
Structure validation
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