PDB: 45853 件ウェブページステータス検索Chemie searchBIRD

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6DHR	NMR Solution structure of Rivi3 分子名称: Rivi3 著者 Harvey, P.J, Craik, D.J. 登録日 2018-05-21 公開日 2019-04-17 最終更新日 2024-10-09 実験手法 SOLUTION NMR 主引用文献 Discovery and Characterization of Cyclotides from Rinorea Species. J. Nat. Prod., 81, 2018
4U4O	Crystal structure of Geneticin bound to the yeast 80S ribosome 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Garreau de Loubresse, N, Prokhorova, I, Yusupova, G, Yusupov, M. 登録日 2014-07-24 公開日 2014-10-22 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structural basis for the inhibition of the eukaryotic ribosome. Nature, 513, 2014
5IMR	Structure of ribosome bound to cofactor at 5.7 angstrom resolution 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Kumar, V, Ero, R, Jian, G.K, Ahmed, T, Zhan, Y, Bhushan, S, Gao, Y.G. 登録日 2016-03-06 公開日 2016-05-18 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (5.7 Å) 主引用文献 Structure of the GTP Form of Elongation Factor 4 (EF4) Bound to the Ribosome J.Biol.Chem., 291, 2016
4U25	Crystal structure of the E. coli ribosome bound to virginiamycin M1. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Noeske, J, Huang, J, Olivier, N.B, Giacobbe, R.A, Zambrowski, M, Cate, J.H.D. 登録日 2014-07-16 公開日 2014-07-30 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Synergy of streptogramin antibiotics occurs independently of their effects on translation. Antimicrob.Agents Chemother., 58, 2014
5EJ4	EcMenD-ThDP-Mn2+ complex soaked with 2-ketoglutarate for 15 min 分子名称: (4S)-4-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3lambda~5~-thiazol-2-yl}-4-hydroxybutanoic acid, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase, FORMIC ACID, ... 著者 Song, H.G, Dong, C, Chen, Y.Z, Sun, Y.R, Guo, Z.H. 登録日 2015-11-01 公開日 2016-06-01 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.773 Å) 主引用文献 A Thiamine-Dependent Enzyme Utilizes an Active Tetrahedral Intermediate in Vitamin K Biosynthesis J.Am.Chem.Soc., 138, 2016
5IF0	Crystal structure of VRC01c-HuGL2 Fab from an HIV-1 naive donor in complex with with a germline-targeting gp120 engineered outer domain eOD-GT8 at 2.44 A 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Germline-targeting HIV-1 gp120 engineered outer domain eOD-GT8, PHOSPHATE ION, ... 著者 Sarkar, A, Wilson, I.A. 登録日 2016-02-25 公開日 2016-04-06 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.44 Å) 主引用文献 HIV-1 broadly neutralizing antibody precursor B cells revealed by germline-targeting immunogen. Science, 351, 2016
4U4Q	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome 分子名称: (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine, 18S ribosomal RNA, 25S ribosomal RNA, ... 著者 Garreau de Loubresse, N, Prokhorova, I, Yusupova, G, Yusupov, M. 登録日 2014-07-24 公開日 2014-10-22 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural basis for the inhibition of the eukaryotic ribosome. Nature, 513, 2014
4U55	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome 分子名称: (14aR)-2,3,6-trimethoxy-11,12,13,14,14a,15-hexahydro-9H-dibenzo[f,h]pyrido[1,2-b]isoquinoline, 18S ribosomal RNA, 25S ribosomal RNA, ... 著者 Garreau de Loubresse, N, Prokhorova, I, Yusupova, G, Yusupov, M. 登録日 2014-07-24 公開日 2014-10-22 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural basis for the inhibition of the eukaryotic ribosome. Nature, 513, 2014
6DNY	Solution structure of the cyclic tetrapeptide, PYPV 分子名称: Cyclic tetrapeptide PYPV 著者 Shekhtman, A, Breindel, L, Zhang, Q, Chen, H. 登録日 2018-06-08 公開日 2019-06-12 最終更新日 2024-11-06 実験手法 SOLUTION NMR 主引用文献 Solution structure of the cyclic tetrapeptide, PYPV. To Be Published
6TRA	Cryo- EM structure of the Thermosynechococcus elongatus photosystem I in the presence of cytochrome c6 分子名称: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ... 著者 Koelsch, A, Radon, C, Baumert, A, Buerger, J, Miehlke, T, Lisdat, F, Zouni, A, Wendler, P. 登録日 2019-12-18 公開日 2020-09-16 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (2.85 Å) 主引用文献 Current limits of structural biology: The transient interaction between cytochrome c6 and photosystem I Curr.Opin.Struct.Biol., 2, 2020
6T9R	Aplysia californica AChBP in complex with a cytisine derivative 分子名称: (1~{R},9~{S})-5-(3-oxidanylpropyl)-7,11-diazatricyclo[7.3.1.0^{2,7}]trideca-2,4-dien-6-one, 2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholine binding protein, ... 著者 Davis, S, Hunter, W.N. 登録日 2019-10-28 公開日 2020-02-12 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.72 Å) 主引用文献 The thermodynamic profile and molecular interactions of a C(9)-cytisine derivative-binding acetylcholine-binding protein from Aplysia californica. Acta Crystallogr.,Sect.F, 76, 2020
5LZW	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, ... 著者 Shao, S, Murray, J, Brown, A, Taunton, J, Ramakrishnan, V, Hegde, R.S. 登録日 2016-10-02 公開日 2016-11-30 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (3.53 Å) 主引用文献 Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes. Cell, 167, 2016
6BY1	E. coli pH03H9 complex 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Amiri, H, Noller, H.F. 登録日 2017-12-19 公開日 2019-02-27 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (3.94 Å) 主引用文献 Structural evidence for product stabilization by the ribosomal mRNA helicase. Rna, 25, 2019
6C1V	MBD2 in complex with double-stranded DNA 分子名称: 12-mer DNA, Methyl-CpG-binding domain protein 2, UNKNOWN ATOM OR ION 著者 Lei, M, Tempel, W, Arrowsmith, C.H, Bountra, C, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC) 登録日 2018-01-05 公開日 2018-02-14 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural basis for the ability of MBD domains to bind methyl-CG and TG sites in DNA. J. Biol. Chem., 293, 2018
5M2B	Yeast 20S proteasome with human beta5i (1-138) and human beta6 (97-111; 118-133) in complex with thiazole based inhibitor Ro19 分子名称: (2~{S})-2-cyclohexyl-4-oxidanylidene-4-[[7-(4-phenyl-1,3-thiazol-2-yl)quinolin-2-yl]amino]butanoic acid, CHLORIDE ION, MAGNESIUM ION, ... 著者 Groll, M. 登録日 2016-10-12 公開日 2017-01-25 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural Elucidation of a Nonpeptidic Inhibitor Specific for the Human Immunoproteasome. Chembiochem, 18, 2017
4TUA	Crystal structure of ASL-Thr bound to Codon ACC-A on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Fagan, C.E, Dunham, C.M. 登録日 2014-06-24 公開日 2015-05-13 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structural insights into translational recoding by frameshift suppressor tRNASufJ. Rna, 20, 2014
5H7X	Crystal structure of the complex of Phosphopantetheine adenylyltransferase from Acinetobacter baumannii with 2-hydroxy-1,2,3-propane tricarboxylate at 1.76 A resolution 分子名称: CITRIC ACID, Phosphopantetheine adenylyltransferase 著者 Singh, P.K, Gupta, A, Kaur, P, Sharma, S, Singh, T.P. 登録日 2016-11-21 公開日 2016-12-07 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 Structural and binding studies of phosphopantetheine adenylyl transferase from Acinetobacter baumannii. Biochim Biophys Acta Proteins Proteom, 1867, 2019
4ZX9	X-ray crystal structure of PfA-M17 in complex with hydroxamic acid-based inhibitor 10b 分子名称: CARBONATE ION, DIMETHYL SULFOXIDE, GLYCEROL, ... 著者 Drinkwater, N, McGowan, S. 登録日 2015-05-20 公開日 2016-03-30 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Potent dual inhibitors of Plasmodium falciparum M1 and M17 aminopeptidases through optimization of S1 pocket interactions. Eur.J.Med.Chem., 110, 2016
5H8K	Crystal structure of Medicago truncatula N-carbamoylputrescine amidohydrolase (MtCPA) C158S mutant 分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... 著者 Sekula, B, Ruszkowski, M, Malinska, M, Dauter, Z. 登録日 2015-12-23 公開日 2016-04-20 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.39 Å) 主引用文献 Structural Investigations of N-carbamoylputrescine Amidohydrolase from Medicago truncatula: Insights into the Ultimate Step of Putrescine Biosynthesis in Plants. Front Plant Sci, 7, 2016
5LO3	Engineering protein stability with atomic precision in a monomeric miniprotein 分子名称: PPaOMe 著者 Baker, E.G, Hudson, K.L, Williams, C, Bartlett, G.G, Heal, J.W, Sessions, R.B, Crump, M.P, Woolfson, D.N. 登録日 2016-08-08 公開日 2017-05-17 最終更新日 2024-11-06 実験手法 SOLUTION NMR 主引用文献 Engineering protein stability with atomic precision in a monomeric miniprotein. Nat. Chem. Biol., 13, 2017
6C4H	Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region) 分子名称: 23S rRNA, 50S ribosomal protein L16, 50S ribosomal protein L2, ... 著者 Zeng, F, Jin, H. 登録日 2018-01-12 公開日 2018-02-21 最終更新日 2020-01-08 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Conformation of methylated GGQ in the Peptidyl Transferase Center during Translation Termination. Sci Rep, 8, 2018
4TUC	Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Fagan, C.E, Dunham, C.M. 登録日 2014-06-24 公開日 2015-05-13 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structural insights into translational recoding by frameshift suppressor tRNASufJ. Rna, 20, 2014
4ZSN	70S-wild-type HigB toxin complex bound to a AAA lysine codon 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Schureck, M.A, Dunham, C.M. 登録日 2015-05-13 公開日 2016-09-07 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Mechanism of endonuclease cleavage by the HigB toxin. Nucleic Acids Res., 44, 2016
5AJ4	Structure of the 55S mammalian mitoribosome. 分子名称: 28S RIBOSOMAL PROTEIN S18B, MITOCHONDRIAL, GUANOSINE-5'-DIPHOSPHATE, ... 著者 Greber, B.J, Bieri, P, Leibundgut, M, Leitner, A, Aebersold, R, Boehringer, D, Ban, N. 登録日 2015-02-20 公開日 2015-04-22 最終更新日 2024-10-23 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 The complete structure of the 55S mammalian mitochondrial ribosome. Science, 348, 2015
4RO0	Crystal structure of MthK gating ring in a ligand-free form 分子名称: Calcium-gated potassium channel MthK 著者 Dong, W, Guo, R, Chai, H, Chen, Z, Cui, H, Ren, Z, Li, Y, Ye, S. 登録日 2014-10-27 公開日 2015-10-28 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.18 Å) 主引用文献 The principle of cooperative gating in a calcium-gated K+ channel To be Published

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