PDB: 1486 件ウェブページステータス検索Chemie searchBIRD

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1I97	CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE 分子名称: 16S RRNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Pioletti, M, Schluenzen, F, Harms, J, Zarivach, R, Gluehmann, M, Avila, H, Bartels, H, Jacobi, C, Hartsch, T, Yonath, A, Franceschi, F. 登録日 2001-03-18 公開日 2001-04-12 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (4.5 Å) 主引用文献 Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3. EMBO J., 20, 2001
1I96	CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN) 分子名称: 16S RRNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Pioletti, M, Schluenzen, F, Harms, J, Zarivach, R, Gluehmann, M, Avila, H, Bartels, H, Jacobi, C, Hartsch, T, Yonath, A, Franceschi, F. 登録日 2001-03-18 公開日 2001-04-12 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (4.2 Å) 主引用文献 Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3. EMBO J., 20, 2001
6I7V	Ribosomal protein paralogs bL31 and bL36 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 1,4-DIAMINOBUTANE, ... 著者 Pulk, A, Cate, J.H.D, Remme, J, Lilleorg, S, Reier, K, Peil, L, Liiv, A, Tammsalu, T. 登録日 2018-11-19 公開日 2018-12-05 最終更新日 2024-04-24 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Bacterial ribosome heterogeneity: Changes in ribosomal protein composition during transition into stationary growth phase. Biochimie, 156, 2018
5FDV	Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Seefeldt, A.C, Graf, M, Perebaskine, N, Nguyen, F, Arenz, S, Mardirossian, M, Scocchi, M, Wilson, D.N, Innis, C.A. 登録日 2015-12-16 公開日 2016-01-27 最終更新日 2024-04-24 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure of the mammalian antimicrobial peptide Bac7(1-16) bound within the exit tunnel of a bacterial ribosome. Nucleic Acids Res., 44, 2016
5HCR	Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Gagnon, M.G, Roy, R.N, Lomakin, I.B, Florin, T, Mankin, A.S, Steitz, T.A. 登録日 2016-01-04 公開日 2016-04-06 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structures of proline-rich peptides bound to the ribosome reveal a common mechanism of protein synthesis inhibition. Nucleic Acids Res., 44, 2016
6HA1	Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Crowe-McAuliffe, C, Graf, M, Huter, P, Abdelshahid, M, Novacek, J, Wilson, D.N. 登録日 2018-08-07 公開日 2018-08-29 最終更新日 2021-01-27 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural basis for antibiotic resistance mediated by theBacillus subtilisABCF ATPase VmlR. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5HCQ	Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Gagnon, M.G, Roy, R.N, Lomakin, I.B, Florin, T, Mankin, A.S, Steitz, T.A. 登録日 2016-01-04 公開日 2016-04-06 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.801 Å) 主引用文献 Structures of proline-rich peptides bound to the ribosome reveal a common mechanism of protein synthesis inhibition. Nucleic Acids Res., 44, 2016
5IB7	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G. 登録日 2016-02-22 公開日 2016-05-25 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.99 Å) 主引用文献 The ribosome prohibits the GU wobble geometry at the first position of the codon-anticodon helix. Nucleic Acids Res., 44, 2016
5IMQ	Structure of ribosome bound to cofactor at 3.8 angstrom resolution 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Kumar, V, Ero, R, Jian, G.K, Ahmed, T, Zhan, Y, Bhushan, S, Gao, Y.G. 登録日 2016-03-06 公開日 2016-05-18 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structure of the GTP Form of Elongation Factor 4 (EF4) Bound to the Ribosome J.Biol.Chem., 291, 2016
6IP6	Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii) 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... 著者 Yokoyama, T, Shigematsu, H, Shirouzu, M, Imataka, H, Ito, T. 登録日 2018-11-02 公開日 2019-05-29 最終更新日 2019-11-06 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 HCV IRES Captures an Actively Translating 80S Ribosome. Mol.Cell, 74, 2019
5HD1	Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Gagnon, M.G, Roy, R.N, Lomakin, I.B, Florin, T, Mankin, A.S, Steitz, T.A. 登録日 2016-01-04 公開日 2016-04-06 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structures of proline-rich peptides bound to the ribosome reveal a common mechanism of protein synthesis inhibition. Nucleic Acids Res., 44, 2016
1I94	CRYSTAL STRUCTURES OF THE SMALL RIBOSOMAL SUBUNIT WITH TETRACYCLINE, EDEINE AND IF3 分子名称: 16S RRNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Pioletti, M, Schluenzen, F, Harms, J, Zarivach, R, Gluehmann, M, Avila, H, Bartels, H, Jacobi, C, Hartsch, T, Yonath, A, Franceschi, F. 登録日 2001-03-18 公開日 2001-04-12 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3. EMBO J., 20, 2001
6HB5	Crystal structure of E. coli tyrRS in complex with 5'-O-(N-L-tyrosyl)sulfamoyl-cytidine 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Tyrosine--tRNA ligase, ... 著者 De Graef, S, Pang, L, Strelkov, S.V, Weeks, S.D. 登録日 2018-08-09 公開日 2019-04-17 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 Comparative analysis of pyrimidine substituted aminoacyl-sulfamoyl nucleosides as potential inhibitors targeting class I aminoacyl-tRNA synthetases. Eur.J.Med.Chem., 173, 2019
6HTQ	Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome 分子名称: 16S rRNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Wilson, D.N, Abdelshahid, M. 登録日 2018-10-04 公開日 2019-10-23 最終更新日 2020-09-30 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 Structural Basis for Regulation of the Opposing (p)ppGpp Synthetase and Hydrolase within the Stringent Response Orchestrator Rel. Cell Rep, 32, 2020
5IT9	Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES. 分子名称: 18S ribosomal RNA, Cricket paralysis virus IRES RNA, MAGNESIUM ION, ... 著者 Murray, J, Savva, C.G, Shin, B.S, Dever, T.E, Ramakrishnan, V, Fernandez, I.S. 登録日 2016-03-16 公開日 2016-05-18 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structural characterization of ribosome recruitment and translocation by type IV IRES. Elife, 5, 2016
5IT7	Structure of the Kluyveromyces lactis 80S ribosome in complex with the cricket paralysis virus IRES and eEF2 分子名称: (2S)-1-amino-N,N,N-trimethyl-1-oxobutan-2-aminium, 18S ribosomal RNA, 25S ribosomal RNA, ... 著者 Murray, J, Savva, C.G, Shin, B.S, Dever, T.E, Ramakrishnan, V, Fernandez, I.S. 登録日 2016-03-16 公開日 2016-05-18 最終更新日 2018-11-21 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structural characterization of ribosome recruitment and translocation by type IV IRES. Elife, 5, 2016
5IB8	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G. 登録日 2016-02-22 公開日 2016-05-25 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.13 Å) 主引用文献 The ribosome prohibits the GU wobble geometry at the first position of the codon-anticodon helix. Nucleic Acids Res., 44, 2016
5IT8	High-resolution structure of the Escherichia coli ribosome 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 1,4-DIAMINOBUTANE, ... 著者 Cocozaki, A, Ferguson, A. 登録日 2016-03-16 公開日 2016-07-27 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.12 Å) 主引用文献 Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors. Proc.Natl.Acad.Sci.USA, 113, 2016
1JGQ	The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY 分子名称: 30S 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Yusupova, G.Z, Yusupov, M.M, Cate, J.H.D, Noller, H.F. 登録日 2001-06-26 公開日 2001-07-20 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (5 Å) 主引用文献 The path of messenger RNA through the ribosome. Cell(Cambridge,Mass.), 106, 2001
6IP5	Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii) 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... 著者 Yokoyama, T, Shigematsu, H, Shirouzu, M, Imataka, H, Ito, T. 登録日 2018-11-02 公開日 2019-05-29 最終更新日 2019-11-06 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 HCV IRES Captures an Actively Translating 80S Ribosome. Mol.Cell, 74, 2019
1JGP	The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY 分子名称: 30S 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Yusupova, G.Z, Yusupov, M.M, Cate, J.H.D, Noller, H.F. 登録日 2001-06-26 公開日 2001-07-20 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (7 Å) 主引用文献 The path of messenger RNA through the ribosome. Cell(Cambridge,Mass.), 106, 2001
1JIL	Crystal structure of S. aureus TyrRS in complex with SB284485 分子名称: [2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID, tyrosyl-tRNA synthetase 著者 Qiu, X, Janson, C.A, Smith, W.W, Jarvest, R.L. 登録日 2001-07-02 公開日 2001-10-26 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of Staphylococcus aureus tyrosyl-tRNA synthetase in complex with a class of potent and specific inhibitors. Protein Sci., 10, 2001
5J88	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 1,4-DIAMINOBUTANE, ... 著者 Cocozaki, A, Ferguson, A. 登録日 2016-04-07 公開日 2016-07-06 最終更新日 2016-12-07 実験手法 X-RAY DIFFRACTION (3.32 Å) 主引用文献 Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors. Proc.Natl.Acad.Sci.USA, 113, 2016
5IWA	Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with the GE81112 peptide antibiotic 分子名称: (2S,3S)-2-{[(2S)-3-(2-amino-1H-imidazol-5-yl)-2-{[(2S,4S)-5-(carbamoyloxy)-4-hydroxy-2-({[(2S,3S)-3-hydroxypiperidin-2-yl]carbonyl}amino)pentanoyl]amino}propanoyl]amino}-3-(2-chloro-1H-imidazol-5-yl)-3-hydroxypropanoic acid, 16S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Schedlbauer, A, Kaminishi, T, Ochoa-Lizarralde, B, Chieko, N, Masahito, K, Takemoto, C, Yokoyama, S, Connell, S.R, Fucini, P. 登録日 2016-03-22 公開日 2016-04-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Inhibition of translation initiation complex formation by GE81112 unravels a 16S rRNA structural switch involved in P-site decoding. Proc.Natl.Acad.Sci.USA, 113, 2016
5J30	Thermus thermophilus 70S termination complex containing E. coli RF1 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Dunham, C.M. 登録日 2016-03-30 公開日 2016-10-12 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Uniformity of Peptide Release Is Maintained by Methylation of Release Factors. Cell Rep, 17, 2016

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