PDB: 45459 件ウェブページステータス検索Chemie searchBIRD

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6V8I	Composite atomic model of the Staphylococcus aureus phage 80alpha baseplate 分子名称: Distal Tail Protein, gp58, FE (III) ION, ... 著者 Kizziah, J.L, Dokland, T. 登録日 2019-12-11 公開日 2020-03-04 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structure of the host cell recognition and penetration machinery of a Staphylococcus aureus bacteriophage. Plos Pathog., 16, 2020
7ZHY	Leishmania donovani Glucose 6-Phosphate Dehydrogenase C138S mutant complexed with NADP(H) 分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Glucose-6-phosphate 1-dehydrogenase, ... 著者 Fritz-Wolf, K, Berneburg, I. 登録日 2022-04-07 公開日 2022-12-14 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 Crystal structure of Leishmania donovani glucose 6-phosphate dehydrogenase reveals a unique N-terminal domain. Commun Biol, 5, 2022
7SC5	Cytoplasmic tail deleted HIV Env trimer in nanodisc 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ... 著者 Yang, S, Walz, T. 登録日 2021-09-27 公開日 2022-11-09 最終更新日 2023-02-22 実験手法 ELECTRON MICROSCOPY (3.88 Å) 主引用文献 Dynamic HIV-1 spike motion creates vulnerability for its membrane-bound tripod to antibody attack. Nat Commun, 13, 2022
6VE7	The inner junction complex of Chlamydomonas reinhardtii doublet microtubule 分子名称: Cilia- and flagella-associated protein 20, FAP276, FAP52, ... 著者 Khalifa, A.A.Z, Ichikawa, M, Bui, K.H. 登録日 2019-12-30 公開日 2020-02-05 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 The inner junction complex of the cilia is an interaction hub that involves tubulin post-translational modifications. Elife, 9, 2020
7SD3	Cytoplasmic tail deleted HIV-1 Env bound with three 4E10 Fabs 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4E10 Fab heavy chain, ... 著者 Yang, S, Walz, T. 登録日 2021-09-29 公開日 2022-11-09 最終更新日 2023-02-22 実験手法 ELECTRON MICROSCOPY (3.67 Å) 主引用文献 Dynamic HIV-1 spike motion creates vulnerability for its membrane-bound tripod to antibody attack. Nat Commun, 13, 2022
6UOT	Cryo-EM structure of the PrgHK periplasmic ring from the Salmonella SPI-1 type III secretion needle complex solved at 3.3 angstrom resolution 分子名称: Lipoprotein PrgK, Protein PrgH 著者 Butan, C, Galan, J. 登録日 2019-10-15 公開日 2020-07-01 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 High-resolution view of the type III secretion export apparatus in situ reveals membrane remodeling and a secretion pathway. Proc.Natl.Acad.Sci.USA, 116, 2019
7ZHU	Leishmania donovani Glucose 6-Phosphate Dehydrogenase complexed with NADP(H) 分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Glucose-6-phosphate 1-dehydrogenase, ... 著者 Fritz-Wolf, K, Berneburg, I. 登録日 2022-04-07 公開日 2022-12-14 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal structure of Leishmania donovani glucose 6-phosphate dehydrogenase reveals a unique N-terminal domain. Commun Biol, 5, 2022
7RTF	SthK R120A Closed State 分子名称: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, SthK 著者 Gao, X, Nimigean, C. 登録日 2021-08-13 公開日 2022-11-23 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Gating intermediates reveal inhibitory role of the voltage sensor in a cyclic nucleotide-modulated ion channel. Nat Commun, 13, 2022
7RTJ	SthK Y26F Activated State 分子名称: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, SthK 著者 Gao, X, Nimigean, C. 登録日 2021-08-13 公開日 2022-11-23 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Gating intermediates reveal inhibitory role of the voltage sensor in a cyclic nucleotide-modulated ion channel. Nat Commun, 13, 2022
6UWT	Clostridium difficile binary toxin translocase CDTb tetradecamer in symmetric conformation 分子名称: ADP-ribosyltransferase binding component, CALCIUM ION 著者 Xu, X, Pozharski, E, des Georges, A. 登録日 2019-11-05 公開日 2020-01-22 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structure of the cell-binding component of theClostridium difficilebinary toxin reveals a di-heptamer macromolecular assembly. Proc.Natl.Acad.Sci.USA, 117, 2020
7ZZQ	BcsH-BcsD 'beads-on-a-string' filament, local refine 分子名称: BcsH fragment, Cellulose biosynthesis protein 著者 Krasteva, P.V, Abidi, W, Decossas, M. 登録日 2022-05-26 公開日 2022-12-28 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.6 Å) 主引用文献 Bacterial crystalline cellulose secretion via a supramolecular BcsHD scaffold. Sci Adv, 8, 2022
7ZYV	Cryo-EM structure of catalytically active Spinacia oleracea cytochrome b6f in complex with endogenous plastoquinones at 2.13 A resolution 分子名称: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE, BETA-CAROTENE, ... 著者 Sarewicz, M, Szwalec, M, Pintscher, S, Indyka, P, Rawski, M, Pietras, R, Mielecki, B, Koziej, L, Jaciuk, M, Glatt, S, Osyczka, A. 登録日 2022-05-25 公開日 2023-01-25 実験手法 ELECTRON MICROSCOPY (2.13 Å) 主引用文献 High-resolution cryo-EM structures of plant cytochrome b 6 f at work. Sci Adv, 9, 2023
7SKC	Solution structure of spider toxin Ssp1a 分子名称: Ssp1a toxin 著者 Wilson, D.T, Daly, N.L, Dongol, Y, Lewis, R.J. 登録日 2021-10-20 公開日 2022-02-02 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Voltage-Gated Sodium Channel Modulation by a New Spider Toxin Ssp1a Isolated From an Australian Theraphosid. Front Pharmacol, 12, 2021
7ZRV	cryo-EM structure of omicron spike in complex with de novo designed binder, full map 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Envelope glycoprotein, ... 著者 Pablo, G, Sarah, W, Alexandra, V.H, Anthony, M, Andreas, S, Zander, H, Dongchun, N, Shuguang, T, Freyr, S, Casper, G, Priscilla, T, Alexandra, T, Stephane, R, Sandrine, G, Jane, M, Aaron, P, Zepeng, X, Yan, C, Pu, H, George, G, Elisa, O, Beat, F, Didier, T, Henning, S, Michael, B, Bruno, E.C. 登録日 2022-05-05 公開日 2023-03-08 最終更新日 2023-05-24 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 De novo design of protein interactions with learned surface fingerprints. Nature, 617, 2023
7SOB	SARS-CoV-2 S B.1.617.1 kappa variant + S309 + S2L20 Global Refinement 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, S2L20 Fab heavy chain, S2L20 Fab light chain, ... 著者 McCallum, M, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2021-10-29 公開日 2021-11-17 最終更新日 2022-01-05 実験手法 ELECTRON MICROSCOPY (2.4 Å) 主引用文献 Molecular basis of immune evasion by the Delta and Kappa SARS-CoV-2 variants. Science, 374, 2021
7SO9	SARS-CoV-2 S B.1.617.2 delta variant + S2M11 + S2L20 Global Refinement 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, S2L20 Fab heavy chain, S2L20 Fab light chain, ... 著者 McCallum, M, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2021-10-29 公開日 2021-11-17 最終更新日 2022-01-05 実験手法 ELECTRON MICROSCOPY (2.4 Å) 主引用文献 Molecular basis of immune evasion by the Delta and Kappa SARS-CoV-2 variants. Science, 374, 2021
6V91	Crystal structure of Stringent starvation protein A (BTH_I2974) from Burkholderia thailandensis 分子名称: 1,2-ETHANEDIOL, ACETATE ION, FORMIC ACID, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2019-12-12 公開日 2020-01-15 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of Stringent starvation protein A (BTH_I2974) from Burkholderia thailandensis to be published
7SOE	SARS-CoV-2 S B.1.617.1 kappa variant + S2X303 Global Refinement 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, S2X303 Fab heavy chain, ... 著者 McCallum, M, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2021-10-29 公開日 2021-11-17 最終更新日 2022-06-08 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Molecular basis of immune evasion by the Delta and Kappa SARS-CoV-2 variants. Science, 374, 2021
7STW	Structure of DPSL (DNA Protection in Starved Cells - Like) from Pyrococcus furiosus 分子名称: DNA protection during starvation protein, FE (III) ION, ZINC ION 著者 Gauvin, C.C, Waghwani, H.K, Douglas, T, Lawrence, C.M. 登録日 2021-11-15 公開日 2021-12-01 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.37 Å) 主引用文献 Structure of DPSL (DNA Protection in Starved Cells - Like) from Pyrococcus furiosus To be published
6VFT	Crystal structure of human delta protocadherin 17 EC1-EC4 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Harrison, O.J, Brasch, J, Shapiro, L. 登録日 2020-01-06 公開日 2020-03-11 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.71 Å) 主引用文献 Family-wide Structural and Biophysical Analysis of Binding Interactions among Non-clustered delta-Protocadherins. Cell Rep, 30, 2020
7SN3	Structure of human SARS-CoV-2 spike glycoprotein trimer bound by neutralizing antibody C1C-A3 Fab (variable region) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Pan, J, Abraham, J, Shankar, S. 登録日 2021-10-27 公開日 2021-12-08 最終更新日 2022-02-02 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural basis for continued antibody evasion by the SARS-CoV-2 receptor binding domain. Science, 375, 2022
6UP6	Endophilin B1 helical scaffold 分子名称: Endophilin-B1 著者 Bhatt, V.S, Sundborger-Lunna, A.C. 登録日 2019-10-16 公開日 2020-06-24 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (9 Å) 主引用文献 Amphipathic Motifs Regulate N-BAR Protein Endophilin B1 Auto-inhibition and Drive Membrane Remodeling. Structure, 29, 2021
6US9	Influenza A M2 proton channel wild type TM domain bound to R-rimantadine 分子名称: CHLORIDE ION, Matrix protein 2, RIMANTADINE 著者 Thomaston, J.L, DeGrado, W.F. 登録日 2019-10-25 公開日 2020-10-28 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Rimantadine Binds to and Inhibits the Influenza A M2 Proton Channel without Enantiomeric Specificity. Biochemistry, 2021
7ZNJ	Structure of an ALYREF-exon junction complex hexamer 分子名称: Eukaryotic initiation factor 4A-III, N-terminally processed, MAGNESIUM ION, ... 著者 Pacheco-Fiallos, F.B, Vorlaender, M.K, Plaschka, C. 登録日 2022-04-21 公開日 2023-04-12 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.4 Å) 主引用文献 mRNA recognition and packaging by the human transcription-export complex. Nature, 616, 2023
7SY7	Cryo-EM structure of the SARS-CoV-2 D614G,N501Y,E484K,K417T mutant spike protein ectodomain bound to human ACE2 ectodomain (global refinement) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... 著者 Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. 登録日 2021-11-24 公開日 2021-12-29 実験手法 ELECTRON MICROSCOPY (2.81 Å) 主引用文献 Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021

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