PDB: 536 件ウェブページステータス検索Chemie searchBIRD

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7POQ	Crystal structure of profragilysin-3 (proBFT-3) from Bacteroides fragilis in complex with foliosidine in P41212. 分子名称: 1,2-ETHANEDIOL, BFT-3, CHLORIDE ION, ... 著者 Eckhard, U, Guevara, T, Gomis-Ruth, F.X. 登録日 2021-09-09 公開日 2022-09-14 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Repositioning small molecule drugs as allosteric inhibitors of the BFT-3 toxin from enterotoxigenic Bacteroides fragilis. Protein Sci., 31, 2022
7PND	Crystal structure of profragilysin-3 (proBFT-3) from Bacteroides fragilis at 1.85 A resolution. 分子名称: BFT-3, DIMETHYL SULFOXIDE, FORMIC ACID, ... 著者 Eckhard, U, Guevara, T, Gomis-Ruth, F.X. 登録日 2021-09-06 公開日 2022-09-14 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Repositioning small molecule drugs as allosteric inhibitors of the BFT-3 toxin from enterotoxigenic Bacteroides fragilis. Protein Sci., 31, 2022
7POL	Crystal structure of profragilysin-3 (proBFT-3) from Bacteroides fragilis in complex with flumequine 分子名称: (12~{R})-7-fluoranyl-12-methyl-4-oxidanylidene-1-azatricyclo[7.3.1.0^{5,13}]trideca-2,5(13),6,8-tetraene-3-carboxylic acid, BFT-3, CHLORIDE ION, ... 著者 Eckhard, U, Guevara, T, Gomis-Ruth, F.X. 登録日 2021-09-09 公開日 2022-09-14 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Repositioning small molecule drugs as allosteric inhibitors of the BFT-3 toxin from enterotoxigenic Bacteroides fragilis. Protein Sci., 31, 2022
7POU	Crystal structure of profragilysin-3 (proBFT-3) from Bacteroides fragilis in complex with hesperetin. 分子名称: (2S)-5,7-dihydroxy-2-(3-hydroxy-4-methoxyphenyl)-2,3-dihydro-4H-1-benzopyran-4-one, BFT-3, DIMETHYL SULFOXIDE, ... 著者 Eckhard, U, Guevara, T, Gomis-Ruth, F.X. 登録日 2021-09-09 公開日 2022-09-14 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.03 Å) 主引用文献 Repositioning small molecule drugs as allosteric inhibitors of the BFT-3 toxin from enterotoxigenic Bacteroides fragilis. Protein Sci., 31, 2022
7QNB	Cryo-EM structure of human full-length beta3gamma2 GABA(A)R in complex with GABA and nanobody Nb25 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GAMMA-AMINO-BUTANOIC ACID, ... 著者 Sente, A, Desai, R, Naydenova, K, Malinauskas, T, Jounaidi, Y, Miehling, J, Zhou, X, Masiulis, S, Hardwick, S.W, Chirgadze, D.Y, Miller, K.W, Aricescu, A.R. 登録日 2021-12-20 公開日 2022-04-13 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Differential assembly diversifies GABA A receptor structures and signalling. Nature, 604, 2022
7QGG	Neuronal RNA granules are ribosome complexes stalled at the pre-translocation state 分子名称: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Pulk, A, Kipper, K, Mansour, A. 登録日 2021-12-08 公開日 2022-10-26 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.86 Å) 主引用文献 Neuronal RNA granules are ribosome complexes stalled at the pre-translocation state. J.Mol.Biol., 434, 2022
7QVP	Human collided disome (di-ribosome) stalled on XBP1 mRNA 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... 著者 Denk, T.G, Tesina, P, Beckmann, R. 登録日 2022-01-22 公開日 2022-10-12 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 A distinct mammalian disome collision interface harbors K63-linked polyubiquitination of uS10 to trigger hRQT-mediated subunit dissociation. Nat Commun, 13, 2022
8QPP	Bacillus subtilis MutS2-collided disome complex (stalled 70S) 分子名称: 16S rRNA (1533-MER), 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Park, E, Mackens-Kiani, T, Berhane, R, Esser, H, Erdenebat, C, Burroughs, A.M, Berninghausen, O, Aravind, L, Beckmann, R, Green, R, Buskirk, A.R. 登録日 2023-10-02 公開日 2023-12-27 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 B. subtilis MutS2 splits stalled ribosomes into subunits without mRNA cleavage. Embo J., 43, 2024
3GJO	Crystal structure of human EB1 in complex with microtubule Tip localization signal peptide of MACF 分子名称: Dystonin, Microtubule-associated protein RP/EB family member 1 著者 Honnappa, S, Steinmetz, M.O. 登録日 2009-03-09 公開日 2009-08-04 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 An EB1-binding motif acts as a microtubule tip localization signal Cell(Cambridge,Mass.), 138, 2009
4YEX	HUaa-19bp 分子名称: DNA-binding protein HU-alpha, synthetic DNA strand 著者 Hammel, M, Reyes, F.E, Parpana, R, Tainer, J.A, Adhya, S, Amlanjyoti, D. 登録日 2015-02-24 公開日 2016-06-29 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 HU multimerization shift controls nucleoid compaction. Sci Adv, 2, 2016
4YEY	HUaa-20bp 分子名称: DNA-binding protein HU-alpha, synthetic DNA strand 著者 Hammel, M, Reyes, F.E, Parpana, R, Tainer, J.A, Adhya, S, Amlanjyoti, D. 登録日 2015-02-24 公開日 2016-06-29 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.354 Å) 主引用文献 HU multimerization shift controls nucleoid compaction. Sci Adv, 2, 2016
4YFH	HU38-20bp 分子名称: DNA-binding protein HU-alpha, synthetic DNA strand 著者 Hammel, M, Reyes, F.E, Parpana, R, Tainer, J.A, Adhya, S, Amlanjyoti, D. 登録日 2015-02-25 公開日 2016-06-29 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.49 Å) 主引用文献 HU multimerization shift controls nucleoid compaction. Sci Adv, 2, 2016
4YF0	HU38-19bp 分子名称: DNA-binding protein HU-alpha, synthetic DNA strand 著者 Hammel, M, Reyes, F.E, Parpana, R, Tainer, J.A, Adhya, S, Amlanjyoti, D. 登録日 2015-02-24 公開日 2016-06-29 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.79 Å) 主引用文献 HU multimerization shift controls nucleoid compaction. Sci Adv, 2, 2016
1HNR	H-NS (DNA-BINDING DOMAIN) 分子名称: H-NS 著者 Shindo, H, Iwaki, T, Ieda, R, Kurumizaka, H, Ueguchi, C, Mizuno, T, Morikawa, S, Nakamura, H, Kuboniwa, H. 登録日 1995-04-06 公開日 1995-07-10 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from Escherichia coli. FEBS Lett., 360, 1995
2MW2	Hha-H-NS46 charge zipper complex 分子名称: DNA-binding protein H-NS, Hemolysin expression-modulating protein Hha 著者 Cordeiro, T.N, Garcia, J, Bernado, P, Millet, O, Pons, M. 登録日 2014-10-24 公開日 2015-07-29 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 A Three-protein Charge Zipper Stabilizes a Complex Modulating Bacterial Gene Silencing. J. Biol. Chem., 290, 2015
1HNS	H-NS (DNA-BINDING DOMAIN) 分子名称: H-NS 著者 Shindo, H, Iwaki, T, Ieda, R, Kurumizaka, H, Ueguchi, C, Mizuno, T, Morikawa, S, Nakamura, H, Kuboniwa, H. 登録日 1995-04-06 公開日 1995-07-10 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from Escherichia coli. FEBS Lett., 360, 1995
4P3V	Crystal structure of the E. coli HU beta2 protein 分子名称: DNA-binding protein HU-beta, LITHIUM ION 著者 Le Meur, R, Coste, F, Castaing, B. 登録日 2014-03-10 公開日 2015-04-15 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Crystal structure of the E. coli HU beta2 protein To Be Published
1LR1	Solution Structure of the Oligomerization Domain of the Bacterial Chromatin-Structuring Protein H-NS 分子名称: dna-binding protein h-ns 著者 Esposito, D, Petrovic, A, Harris, R, Ono, S, Eccleston, J, Mbabaali, A, Haq, I, Higgins, C.F, Hinton, J.C.D, Driscoll, P.C, Ladbury, J.E. 登録日 2002-05-14 公開日 2003-01-14 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 H-NS Oligomerization Domain Structure Reveals the Mechanism for High Order Self-association of the Intact Protein J.Mol.Biol., 324, 2002
2XYQ	Crystal structure of the nsp16 nsp10 SARS coronavirus complex 分子名称: CHLORIDE ION, MAGNESIUM ION, NON-STRUCTURAL PROTEIN 10, ... 著者 Decroly, E, Debarnot, C, Ferron, F, Bouvet, M, Coutard, B, Imbert, I, Gluais, L, Papageorgiou, N, Ortiz-Lombardia, M, Lescar, J, Canard, B. 登録日 2010-11-18 公開日 2011-10-19 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal Structure and Functional Analysis of the Sars-Coronavirus RNA CAP 2'-O-Methyltransferase Nsp10/Nsp16 Complex. Plos Pathog., 7, 2011
2XYV	Crystal structure of the nsp16 nsp10 SARS coronavirus complex 分子名称: CHLORIDE ION, MAGNESIUM ION, NON-STRUCTURAL PROTEIN 10, ... 著者 Decroly, E, Debarnot, C, Ferron, F, Bouvet, M, Coutard, B, Imbert, I, Gluais, L, Papageorgiou, N, Ortiz-Lombardia, M, Lescar, J, Canard, B. 登録日 2010-11-19 公開日 2011-10-26 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.06 Å) 主引用文献 Crystal Structure and Functional Analysis of the Sars-Coronavirus RNA CAP 2'-O-Methyltransferase Nsp10/Nsp16 Complex. Plos Pathog., 7, 2011
7YVB	Aplysia californica FaNaC in ligand bound state 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FMRFamide-gated Na+ channel, ... 著者 Chen, Q.F, Liu, F.L, Dang, Y, Feng, H, Zhang, Z, Ye, S. 登録日 2022-08-19 公開日 2023-08-09 最終更新日 2023-10-11 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structure and mechanism of a neuropeptide-activated channel in the ENaC/DEG superfamily. Nat.Chem.Biol., 19, 2023
7YVC	Aplysia californica FaNaC in apo state 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... 著者 Chen, Q.F, Liu, F.L, Dang, Y, Feng, H, Zhang, Z, Ye, S. 登録日 2022-08-19 公開日 2023-08-09 最終更新日 2023-10-11 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structure and mechanism of a neuropeptide-activated channel in the ENaC/DEG superfamily. Nat.Chem.Biol., 19, 2023
4V9Q	Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Svidritskiy, E, Ling, C, Ermolenko, D.N, Korostelev, A.A. 登録日 2013-06-12 公開日 2014-07-09 最終更新日 2019-07-17 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Blasticidin S inhibits translation by trapping deformed tRNA on the ribosome. Proc.Natl.Acad.Sci.USA, 110, 2013
6ND5	Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Svetlov, M.S, Plessa, E, Chen, C.-W, Bougas, A, Krokidis, M.G, Dinos, G.P, Polikanov, Y.S. 登録日 2018-12-13 公開日 2019-03-20 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 High-resolution crystal structures of ribosome-bound chloramphenicol and erythromycin provide the ultimate basis for their competition. RNA, 25, 2019
4V6F	Elongation complex of the 70S ribosome with three tRNAs and mRNA. 分子名称: 16S ribosomal RNA, 23S RIBOSOMAL RNA, 23S RRNA, ... 著者 Jenner, L.B, Yusupova, G, Yusupov, M. 登録日 2009-07-09 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural aspects of messenger RNA reading frame maintenance by the ribosome. Nat.Struct.Mol.Biol., 17, 2010

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