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PDB: 268 件

7CRR
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BU of 7crr by Molmil
Native NSD3 bound to 187-bp nucleosome
分子名称: DNA (168-MER), DNA(168-MER), Histone H2A, ...
著者Li, W, Tian, W, Yuan, G, Deng, P, Gozani, O, Patel, D, Wang, Z.
登録日2020-08-14
公開日2020-10-21
最終更新日2021-03-03
実験手法ELECTRON MICROSCOPY (3.48 Å)
主引用文献Molecular basis of nucleosomal H3K36 methylation by NSD methyltransferases.
Nature, 590, 2021
6UH5
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BU of 6uh5 by Molmil
Structural basis of COMPASS eCM recognition of the H2Bub nucleosome
分子名称: Bre2, DNA (146-MER), H3 N-terminus, ...
著者Hsu, P.L, Shi, H, Zheng, N.
登録日2019-09-26
公開日2019-11-20
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural Basis of H2B Ubiquitination-Dependent H3K4 Methylation by COMPASS.
Mol.Cell, 76, 2019
6O96
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BU of 6o96 by Molmil
Dot1L bound to the H2BK120 Ubiquitinated nucleosome
分子名称: DNA (146-MER), Histone H2A, Histone H2B 1.1, ...
著者Valencia-Sanchez, M.I, De Ioannes, P.E, Miao, W, Vasilyev, N, Chen, R, Nudler, E, Armache, J.-P, Armache, K.-J.
登録日2019-03-13
公開日2019-04-24
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural Basis of Dot1L Stimulation by Histone H2B Lysine 120 Ubiquitination.
Mol.Cell, 74, 2019
6WKR
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BU of 6wkr by Molmil
PRC2-AEBP2-JARID2 bound to H2AK119ub1 nucleosome
分子名称: DNA (314-MER), Histone H2A type 1, Histone H2B 1.1, ...
著者Kasinath, V, Nogales, E, Beck, C, Sauer, P, Poepsel, S, Kosmatka, J, Faini, M, Toso, D, Aebersold, R.
登録日2020-04-16
公開日2021-02-03
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献JARID2 and AEBP2 regulate PRC2 in the presence of H2AK119ub1 and other histone modifications.
Science, 371, 2021
3KWQ
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BU of 3kwq by Molmil
Structural characterization of H3K56Q nucleosomes and nucleosomal arrays
分子名称: DNA (146-MER), Histone H2A, Histone H2B 1.1, ...
著者Lilyestrom, W.G, Clark, N.
登録日2009-12-01
公開日2010-05-12
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Structural characterization of H3K56Q nucleosomes and nucleosomal arrays.
Biochim.Biophys.Acta, 1799
7KBE
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BU of 7kbe by Molmil
Nucleosome isolated from metaphase chromosome formed in Xenopus egg extract (oligo fraction)
分子名称: DNA (157-MER), Histone H2A, Histone H2B 1.1, ...
著者Arimura, Y, Funabiki, H.
登録日2020-10-02
公開日2021-09-15
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural features of nucleosomes in interphase and metaphase chromosomes.
Mol.Cell, 81, 2021
6NQA
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BU of 6nqa by Molmil
Active state Dot1L bound to the H2B-Ubiquitinated nucleosome, 1-to-1 complex
分子名称: 601 DNA Strand 1, 601 DNA Strand 2, Histone H2A type 1, ...
著者Worden, E.J, Hoffmann, N.A, Wolberger, C.
登録日2019-01-19
公開日2019-02-20
最終更新日2020-01-08
実験手法ELECTRON MICROSCOPY (3.54 Å)
主引用文献Mechanism of Cross-talk between H2B Ubiquitination and H3 Methylation by Dot1L.
Cell, 176, 2019
8DU4
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BU of 8du4 by Molmil
Complex between RbBP5-WDR5 and an H2B-ubiquitinated nucleosome
分子名称: 601 DNA (146-MER), Histone H2A, Histone H2B 1.1, ...
著者Niklas, H.A, Rahman, S, Worden, E.J, Wolberger, C.
登録日2022-07-26
公開日2022-09-21
最終更新日2022-10-05
実験手法ELECTRON MICROSCOPY (3.55 Å)
主引用文献Multistate structures of the MLL1-WRAD complex bound to H2B-ubiquitinated nucleosome.
Proc.Natl.Acad.Sci.USA, 119, 2022
8IHM
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BU of 8ihm by Molmil
Eaf3 CHD domain bound to the nucleosome
分子名称: Chromatin modification-related protein EAF3, DNA (164-MER), DNA (165-MER), ...
著者Zhang, Y, Gang, C.
登録日2023-02-23
公開日2024-03-20
実験手法ELECTRON MICROSCOPY (3.58 Å)
主引用文献Structural basis for nucleosome binding and catalysis by the yeast Rpd3S/HDAC holoenzyme.
Cell Res., 33, 2023
6T9L
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BU of 6t9l by Molmil
SAGA DUB module bound to a ubiqitinated nucleosome
分子名称: Histone H2A, Histone H2B, Histone H2B 1.1, ...
著者Wang, H, Cramer, P.
登録日2019-10-28
公開日2020-01-29
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structure of the transcription coactivator SAGA.
Nature, 577, 2020
8CEO
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BU of 8ceo by Molmil
Yeast RNA polymerase II transcription pre-initiation complex with core Mediator and the +1 nucleosome
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Wang, H, Cramer, P.
登録日2023-02-02
公開日2023-03-08
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Yeast PIC-Mediator structure with RNA polymerase II C-terminal domain.
Proc.Natl.Acad.Sci.USA, 120, 2023
5Z3O
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BU of 5z3o by Molmil
Structure of Snf2-nucleosome complex in ADP state
分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (167-MER), Histone H2A, ...
著者Li, M, Xia, X, Liu, X, Li, X, Chen, Z.
登録日2018-01-08
公開日2019-04-03
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.62 Å)
主引用文献Mechanism of DNA translocation underlying chromatin remodelling by Snf2.
Nature, 567, 2019
6IY3
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BU of 6iy3 by Molmil
Structure of Snf2-MMTV-A nucleosome complex at shl-2 in ADP state
分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (147-MER), Histone H2A, ...
著者Li, M, Xia, X, Liu, X, Li, X, Chen, Z.
登録日2018-12-12
公開日2019-04-03
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.67 Å)
主引用文献Mechanism of DNA translocation underlying chromatin remodelling by Snf2.
Nature, 567, 2019
7M1X
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BU of 7m1x by Molmil
Cryo-EM Structure of Nucleosome containing mouse histone variant H2A.Z
分子名称: DNA (136-MER), Histone H2A.Z, Histone H2B 1.1, ...
著者Tan, D, Lewis, T.
登録日2021-03-15
公開日2021-09-29
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural basis of chromatin regulation by histone variant H2A.Z.
Nucleic Acids Res., 49, 2021
6UGM
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BU of 6ugm by Molmil
Structural basis of COMPASS eCM recognition of an unmodified nucleosome
分子名称: Bre2, DNA (146-MER), H3 N-terminus, ...
著者Hsu, P.L, Shi, H, Zheng, N.
登録日2019-09-26
公開日2019-11-20
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural Basis of H2B Ubiquitination-Dependent H3K4 Methylation by COMPASS.
Mol.Cell, 76, 2019
6LTJ
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BU of 6ltj by Molmil
Structure of nucleosome-bound human BAF complex
分子名称: AT-rich interactive domain-containing protein 1A, Actin, cytoplasmic 1, ...
著者He, S, Wu, Z, Tian, Y, Yu, Z, Yu, J, Wang, X, Li, J, Liu, B, Xu, Y.
登録日2020-01-22
公開日2020-02-12
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structure of nucleosome-bound human BAF complex.
Science, 367, 2020
6ESF
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BU of 6esf by Molmil
Nucleosome : Class 1
分子名称: DNA (147-MER), Histone H2A, Histone H2B 1.1, ...
著者Bilokapic, S, Halic, M.
登録日2017-10-20
公開日2017-12-20
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Histone octamer rearranges to adapt to DNA unwrapping.
Nat. Struct. Mol. Biol., 25, 2018
8IHT
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BU of 8iht by Molmil
Rpd3S bound to the nucleosome
分子名称: CALCIUM ION, Chromatin modification-related protein EAF3, DNA (164-MER), ...
著者Zhang, Y, Gang, C.
登録日2023-02-23
公開日2024-03-20
実験手法ELECTRON MICROSCOPY (3.72 Å)
主引用文献Structural basis for nucleosome binding and catalysis by the yeast Rpd3S/HDAC holoenzyme.
Cell Res., 33, 2023
7CRO
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BU of 7cro by Molmil
NSD2 bearing E1099K/T1150A dual mutation in complex with 187-bp NCP
分子名称: DNA (168-MER), Histone H2A, Histone H2B, ...
著者Li, W, Tian, W, Yuan, G, Deng, P, Gozani, O, Patel, D, Wang, Z.
登録日2020-08-14
公開日2020-10-21
最終更新日2021-03-03
実験手法ELECTRON MICROSCOPY (3.75 Å)
主引用文献Molecular basis of nucleosomal H3K36 methylation by NSD methyltransferases.
Nature, 590, 2021
8BZ1
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BU of 8bz1 by Molmil
RNA polymerase II core pre-initiation complex with the proximal +1 nucleosome (cPIC-Nuc10W)
分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB11-a, ...
著者Abril-Garrido, J, Dienemann, C, Grabbe, F, Velychko, T, Lidschreiber, M, Wang, H, Cramer, P.
登録日2022-12-14
公開日2023-05-03
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structural basis of transcription reduction by a promoter-proximal +1 nucleosome.
Mol.Cell, 83, 2023
6FQ5
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BU of 6fq5 by Molmil
Class 1 : canonical nucleosome
分子名称: DNA (147-MER), Histone H2A, Histone H2B, ...
著者Bilokapic, S, Halic, M.
登録日2018-02-13
公開日2018-04-18
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structural rearrangements of the histone octamer translocate DNA.
Nat Commun, 9, 2018
6NZO
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BU of 6nzo by Molmil
Set2 bound to nucleosome
分子名称: DNA (149-MER), Histone H2B 1.1, Histone H3, ...
著者Halic, M, Bilokapic, S.
登録日2019-02-14
公開日2019-08-28
最終更新日2019-09-04
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Nucleosome and ubiquitin position Set2 to methylate H3K36.
Nat Commun, 10, 2019
4ZUX
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BU of 4zux by Molmil
SAGA DUB module Ubp8/Sgf11/Sus1/Sgf73 bound to ubiqitinated nucleosome
分子名称: DNA (145-MER), Histone H2A type 1, Histone H2B 1.1, ...
著者Morgan, M, Wolberger, C.
登録日2015-05-17
公開日2016-02-24
最終更新日2016-03-09
実験手法X-RAY DIFFRACTION (3.82 Å)
主引用文献Structural basis for histone H2B deubiquitination by the SAGA DUB module.
Science, 351, 2016
6K1P
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BU of 6k1p by Molmil
The complex of ISWI-nucleosome in the ADP.BeF-bound state
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA (167-MER), ...
著者Yan, L.J, Wu, H, Li, X.M, Gao, N, Chen, Z.C.
登録日2019-05-10
公開日2019-05-29
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.87 Å)
主引用文献Structures of the ISWI-nucleosome complex reveal a conserved mechanism of chromatin remodeling.
Nat.Struct.Mol.Biol., 26, 2019
6VZ4
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BU of 6vz4 by Molmil
Cryo-EM structure of Sth1-Arp7-Arp9-Rtt102 bound to the nucleosome in ADP Beryllium Fluoride state
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Actin-like protein ARP9, ...
著者Leschziner, A.E, Baker, R.W.
登録日2020-02-27
公開日2020-12-02
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Structural insights into assembly and function of the RSC chromatin remodeling complex.
Nat.Struct.Mol.Biol., 28, 2021

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件を2024-08-07に公開中

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