5EGG
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5XIS
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![BU of 5xis by Molmil](/molmil-images/mine/5xis) | Crystal structure of RNF168 UDM1 in complex with Lys63-linked diubiquitin, form I | 分子名称: | E3 ubiquitin-protein ligase RNF168, MAGNESIUM ION, Ubiquitin-40S ribosomal protein S27a, ... | 著者 | Takahashi, T.S, Sato, Y, Fukai, S. | 登録日 | 2017-04-27 | 公開日 | 2018-03-07 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.78 Å) | 主引用文献 | Structural insights into two distinct binding modules for Lys63-linked polyubiquitin chains in RNF168. Nat Commun, 9, 2018
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5XIU
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![BU of 5xiu by Molmil](/molmil-images/mine/5xiu) | Crystal structure of RNF168 UDM2 in complex with Lys63-linked diubiquitin | 分子名称: | 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase RNF168, Ubiquitin-40S ribosomal protein S27a | 著者 | Takahashi, T.S, Sato, Y, Fukai, S. | 登録日 | 2017-04-27 | 公開日 | 2018-03-07 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Structural insights into two distinct binding modules for Lys63-linked polyubiquitin chains in RNF168. Nat Commun, 9, 2018
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1X23
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![BU of 1x23 by Molmil](/molmil-images/mine/1x23) | Crystal structure of ubch5c | 分子名称: | Ubiquitin-conjugating enzyme E2 D3 | 著者 | Nakanishi, M, Teshima, N, Mizushima, T, Murata, S, Tanaka, K, Yamane, T. | 登録日 | 2005-04-19 | 公開日 | 2005-05-03 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Crystal structure of ubch5c To be Published
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7VZ4
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![BU of 7vz4 by Molmil](/molmil-images/mine/7vz4) | Cryo-EM structure of human nucleosome core particle composed of the Widom 601L DNA sequence | 分子名称: | DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... | 著者 | Takizawa, Y, Ho, C.-H, Sato, S, Danev, R, Kurumizaka, H. | 登録日 | 2021-11-15 | 公開日 | 2023-05-17 | 最終更新日 | 2024-06-26 | 実験手法 | ELECTRON MICROSCOPY (1.89 Å) | 主引用文献 | Methods for High Resolution Cryo-EM Analyses of Nucleosomes To Be Published
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6ACL
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![BU of 6acl by Molmil](/molmil-images/mine/6acl) | |
8I17
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![BU of 8i17 by Molmil](/molmil-images/mine/8i17) | |
5B0Z
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![BU of 5b0z by Molmil](/molmil-images/mine/5b0z) | The crystal structure of the nucleosome containing H3.2, at 1.98 A resolution | 分子名称: | CHLORIDE ION, DNA (146-MER), Histone H2A type 1-B/E, ... | 著者 | Suzuki, Y, Horikoshi, N, Kato, D, Kurumizaka, H. | 登録日 | 2015-11-14 | 公開日 | 2016-01-27 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.987 Å) | 主引用文献 | Crystal structure of the nucleosome containing histone H3 with crotonylated lysine 122 Biochem.Biophys.Res.Commun., 469, 2016
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5Y0D
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![BU of 5y0d by Molmil](/molmil-images/mine/5y0d) | Crystal Structure of the human nucleosome containing the H2B E76K mutant | 分子名称: | CHLORIDE ION, DNA (146-MER), Histone H2A type 1-B/E, ... | 著者 | Kurumizaka, H, Arimura, Y, Fujita, R, Noda, M. | 登録日 | 2017-07-16 | 公開日 | 2018-07-18 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.99 Å) | 主引用文献 | Cancer-associated mutations of histones H2B, H3.1 and H2A.Z.1 affect the structure and stability of the nucleosome. Nucleic Acids Res., 46, 2018
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6IPU
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4S3O
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![BU of 4s3o by Molmil](/molmil-images/mine/4s3o) | PCGF5-RING1B-UbcH5c complex | 分子名称: | E3 ubiquitin-protein ligase RING2, Polycomb group RING finger protein 5, Ubiquitin-conjugating enzyme E2 D3, ... | 著者 | Taherbhoy, A.M, Cochran, A.G. | 登録日 | 2015-03-23 | 公開日 | 2015-07-15 | 最終更新日 | 2023-09-20 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | BMI1-RING1B is an autoinhibited RING E3 ubiquitin ligase. Nat Commun, 6, 2015
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8UQA
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![BU of 8uqa by Molmil](/molmil-images/mine/8uqa) | Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 12-residue linker | 分子名称: | CHLORIDE ION, E3 ubiquitin-protein ligase RNF168,Ubiquitin-conjugating enzyme E2 D3,Histone H2B type 2-E,Histone H2A type 1-B/E, SODIUM ION, ... | 著者 | Hu, Q, Botuyan, M.V, Mer, G. | 登録日 | 2023-10-23 | 公開日 | 2024-01-17 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.049 Å) | 主引用文献 | Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
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5Y0C
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![BU of 5y0c by Molmil](/molmil-images/mine/5y0c) | Crystal Structure of the human nucleosome at 2.09 angstrom resolution | 分子名称: | CHLORIDE ION, DNA (146-MER), Histone H2A type 1-B/E, ... | 著者 | Kurumizaka, H, Arimura, Y, Fujita, R, Noda, M. | 登録日 | 2017-07-16 | 公開日 | 2018-07-18 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.087 Å) | 主引用文献 | Cancer-associated mutations of histones H2B, H3.1 and H2A.Z.1 affect the structure and stability of the nucleosome. Nucleic Acids Res., 46, 2018
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3L11
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![BU of 3l11 by Molmil](/molmil-images/mine/3l11) | Crystal Structure of the Ring Domain of RNF168 | 分子名称: | E3 ubiquitin-protein ligase RNF168, MALONATE ION, ZINC ION | 著者 | Neculai, D, Yermekbayeva, L, Crombet, L, Weigelt, J, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC) | 登録日 | 2009-12-10 | 公開日 | 2010-01-19 | 最終更新日 | 2023-09-06 | 実験手法 | X-RAY DIFFRACTION (2.12 Å) | 主引用文献 | Molecular insights into the function of RING finger (RNF)-containing proteins hRNF8 and hRNF168 in Ubc13/Mms2-dependent ubiquitylation. J.Biol.Chem., 287, 2012
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8Q3E
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![BU of 8q3e by Molmil](/molmil-images/mine/8q3e) | High Resolution Structure of Nucleosome Core with Bound Foamy Virus GAG Peptide | 分子名称: | DNA (145-MER), GLY-GLY-TYR-ASN-LEU-ARG-PRO-ARG-THR-TYR-GLN-PRO-GLN-ARG-TYR-GLY-GLY-GLY, Histone H2A type 1-B/E, ... | 著者 | De Falco, L, Batchelor, L.K, Dyson, P.J, Davey, C.A. | 登録日 | 2023-08-04 | 公開日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (2.174 Å) | 主引用文献 | Viral peptide conjugates for metal-warhead delivery to chromatin. Rsc Adv, 14, 2024
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5X7X
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![BU of 5x7x by Molmil](/molmil-images/mine/5x7x) | The crystal structure of the nucleosome containing H3.3 at 2.18 angstrom resolution | 分子名称: | CHLORIDE ION, DNA (146-MER), Histone H2A type 1-B/E, ... | 著者 | Arimura, Y, Taguchi, H, Kurumizaka, H. | 登録日 | 2017-02-27 | 公開日 | 2017-04-19 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.184 Å) | 主引用文献 | Crystal Structure and Characterization of Novel Human Histone H3 Variants, H3.6, H3.7, and H3.8 Biochemistry, 56, 2017
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5IFR
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![BU of 5ifr by Molmil](/molmil-images/mine/5ifr) | Structure of the stable UBE2D3-UbDha conjugate | 分子名称: | GLYCEROL, Polyubiquitin-B, Ubiquitin-conjugating enzyme E2 D3 | 著者 | Pruneda, J.N, Mulder, M.P.C, Witting, K, Ovaa, H, Komander, D. | 登録日 | 2016-02-26 | 公開日 | 2016-05-11 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | A cascading activity-based probe sequentially targets E1-E2-E3 ubiquitin enzymes. Nat.Chem.Biol., 12, 2016
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5AV9
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![BU of 5av9 by Molmil](/molmil-images/mine/5av9) | human nucleosome core particle | 分子名称: | DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... | 著者 | Wakamori, M, Fujii, Y, Umehara, T, Yokoyama, S. | 登録日 | 2015-06-12 | 公開日 | 2015-12-23 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Intra- and inter-nucleosomal interactions of the histone H4 tail revealed with a human nucleosome core particle with genetically-incorporated H4 tetra-acetylation Sci Rep, 5, 2015
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5AV8
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![BU of 5av8 by Molmil](/molmil-images/mine/5av8) | human nucleosome core particle | 分子名称: | DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... | 著者 | Wakamori, M, Fujii, Y, Umehara, T, Yokoyama, S. | 登録日 | 2015-06-12 | 公開日 | 2015-12-23 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Intra- and inter-nucleosomal interactions of the histone H4 tail revealed with a human nucleosome core particle with genetically-incorporated H4 tetra-acetylation Sci Rep, 5, 2015
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5AV6
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![BU of 5av6 by Molmil](/molmil-images/mine/5av6) | human nucleosome core particle | 分子名称: | DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... | 著者 | Wakamori, M, Fujii, Y, Umehara, T, Yokoyama, S. | 登録日 | 2015-06-12 | 公開日 | 2015-12-23 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Intra- and inter-nucleosomal interactions of the histone H4 tail revealed with a human nucleosome core particle with genetically-incorporated H4 tetra-acetylation Sci Rep, 5, 2015
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5B31
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![BU of 5b31 by Molmil](/molmil-images/mine/5b31) | The crystal structure of the heterotypic H2AZ/H2A nucleosome with H3.1. | 分子名称: | CHLORIDE ION, DNA (146-MER), Histone H2A type 1-B/E, ... | 著者 | Horikoshi, N, Taguchi, H, Arimura, Y, Kurumizaka, H. | 登録日 | 2016-02-08 | 公開日 | 2016-08-03 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Crystal structures of heterotypic nucleosomes containing histones H2A.Z and H2A. Open Biology, 6, 2016
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6KE9
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![BU of 6ke9 by Molmil](/molmil-images/mine/6ke9) | The Human Telomeric Nucleosome Displays Distinct Structural and Dynamic Properties | 分子名称: | Histone H2A type 1-B/E, Histone H2B type 1-K, Histone H3.1, ... | 著者 | Soman, A, Liew, C.W, Teo, H.L, Berezhnoy, N, Korolev, N, Rhodes, D, Nordenskiold, L. | 登録日 | 2019-07-04 | 公開日 | 2020-04-22 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.22 Å) | 主引用文献 | The human telomeric nucleosome displays distinct structural and dynamic properties. Nucleic Acids Res., 48, 2020
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5XIT
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![BU of 5xit by Molmil](/molmil-images/mine/5xit) | Crystal structure of RNF168 UDM1 in complex with Lys63-linked diubiquitin, form II | 分子名称: | E3 ubiquitin-protein ligase RNF168, GLYCEROL, PRASEODYMIUM ION, ... | 著者 | Takahashi, T.S, Sato, Y, Fukai, S. | 登録日 | 2017-04-27 | 公開日 | 2018-03-07 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.25 Å) | 主引用文献 | Structural insights into two distinct binding modules for Lys63-linked polyubiquitin chains in RNF168. Nat Commun, 9, 2018
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6JXD
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![BU of 6jxd by Molmil](/molmil-images/mine/6jxd) | |
6IQ4
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![BU of 6iq4 by Molmil](/molmil-images/mine/6iq4) | Nucleosome core particle cross-linked with a hetero-binuclear molecule possessing RAPTA and gold(I) 4-(diphenylphosphino)benzoic acid groups. | 分子名称: | 4-diphenylphosphanylbenzoic acid, DNA (145-MER), GOLD ION, ... | 著者 | DeFalco, L, Batchelor, L.K, Adhireksan, Z, Dyson, P.J, Davey, C.A. | 登録日 | 2018-11-06 | 公開日 | 2019-10-30 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (2.25 Å) | 主引用文献 | Crosslinking Allosteric Sites on the Nucleosome. Angew.Chem.Int.Ed.Engl., 58, 2019
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