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PDB: 334 件
1TTY
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BU of 1tty by Molmil
Solution structure of sigma A region 4 from Thermotoga maritima
分子名称: RNA polymerase sigma factor rpoD
著者Lambert, L.J, Wei, Y, Schirf, V, Demeler, B, Werner, M.H.
登録日2004-06-23
公開日2004-11-23
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献T4 AsiA blocks DNA recognition by remodeling sigma(70) region 4
Embo J., 23, 2004
6IDO
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BU of 6ido by Molmil
Crystal structure of Klebsiella pneumoniae sigma4 of sigmaS fusing with the RNA polymerase beta-flap-tip-helix in complex with -35 element DNA
分子名称: DNA (5'-D(P*CP*CP*AP*CP*TP*TP*GP*AP*CP*AP*AP*AP*TP*CP*G)-3'), DNA (5'-D(P*GP*AP*TP*TP*TP*GP*TP*CP*AP*AP*GP*TP*GP*GP*C)-3'), RNA polymerase sigma factor RpoS,RNA polymerase beta-flap-tip-helix
著者Lou, Y.C, Chien, C.Y, Chen, C, Hsu, C.H.
登録日2018-09-10
公開日2019-09-11
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.748 Å)
主引用文献Structural basis for -35 element recognition by sigma4chimera proteins and their interactions with PmrA response regulator.
Proteins, 88, 2020
1KU7
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BU of 1ku7 by Molmil
Crystal Structure of Thermus aquatics RNA Polymerase SigmaA Subunit Region 4 Bound to-35 Element DNA
分子名称: 5'-D(*CP*CP*TP*TP*GP*AP*CP*AP*AP*AP*G)-3', 5'-D(*CP*CP*TP*TP*TP*GP*TP*CP*AP*AP*G)-3', sigma factor sigA
著者Campbell, E.A, Muzzin, O, Chlenov, M, Sun, J.L, Olson, C.A, Weinman, O, Trester-Zedlitz, M.L, Darst, S.A.
登録日2002-01-21
公開日2002-03-29
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of the bacterial RNA polymerase promoter specificity sigma subunit.
Mol.Cell, 9, 2002
1KU3
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BU of 1ku3 by Molmil
Crystal Structure of Thermus aquaticus RNA Polymerase Sigma Subunit Fragment, Region 4
分子名称: sigma factor sigA
著者Campbell, E.A, Muzzin, O, Chlenov, M, Sun, J.L, Olson, C.A, Weinman, O, Trester-Zedlitz, M.L, Darst, S.A.
登録日2002-01-21
公開日2002-04-03
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of the bacterial RNA polymerase promoter specificity sigma subunit.
Mol.Cell, 9, 2002
6FI7
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BU of 6fi7 by Molmil
E.coli Sigma factor S (RpoS) Region 4
分子名称: RNA polymerase sigma factor RpoS
著者Liu, B, Matthews, S.J.
登録日2018-01-17
公開日2018-06-06
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献T7 phage factor required for managing RpoS inEscherichia coli.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
3HUG
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BU of 3hug by Molmil
Crystal structure of Mycobacterium tuberculosis anti-sigma factor RslA in complex with -35 promoter binding domain of sigL
分子名称: PROBABLE CONSERVED MEMBRANE PROTEIN, RNA polymerase sigma factor, SULFATE ION, ...
著者Thakur, K.G, Gopal, B.
登録日2009-06-14
公開日2010-03-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structural and biochemical bases for the redox sensitivity of Mycobacterium tuberculosis RslA
J.Mol.Biol., 397, 2010
1TLH
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BU of 1tlh by Molmil
T4 AsiA bound to sigma70 region 4
分子名称: 10 kDa anti-sigma factor, RNA polymerase sigma factor rpoD
著者Lambert, L.J, Wei, Y, Schirf, V, Demeler, B, Werner, M.H.
登録日2004-06-09
公開日2004-11-23
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献T4 AsiA blocks DNA recognition by remodeling sigma(70) region 4
Embo J., 23, 2004
1NR3
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BU of 1nr3 by Molmil
SOLUTION STRUCTURE OF THE PROTEIN MTH0916: THE NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TT212
分子名称: DNA-binding protein tfx
著者Shen, Y, Liu, G, Bhaskaran, R, Yee, A, Arrowsmith, C, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
登録日2003-01-23
公開日2003-06-10
最終更新日2024-05-08
実験手法SOLUTION NMR
主引用文献SOLUTION STRUCTURE OF THE PROTEIN MTH0916: THE NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TT212
To be Published
8HNP
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BU of 8hnp by Molmil
Archaeal transcription factor Mutant
分子名称: Archaeal transcription regulator
著者Bae, D.W, Cha, S.S.
登録日2022-12-08
公開日2023-09-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.39 Å)
主引用文献An archaeal transcription factor EnfR with a novel 'eighth note' fold controls hydrogen production of a hyperthermophilic archaeon Thermococcus onnurineus NA1.
Nucleic Acids Res., 51, 2023
8HNO
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BU of 8hno by Molmil
Archaeal transcription factor Wild type
分子名称: Archaeal transcription regulator
著者Bae, D.W, Cha, S.S.
登録日2022-12-08
公開日2023-09-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.84 Å)
主引用文献An archaeal transcription factor EnfR with a novel 'eighth note' fold controls hydrogen production of a hyperthermophilic archaeon Thermococcus onnurineus NA1.
Nucleic Acids Res., 51, 2023
4G8X
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BU of 4g8x by Molmil
G1 ORF67 / Staphyloccus aureus sigmaA domain 4 complex
分子名称: ORF067, RNA polymerase sigma factor rpoD
著者Darst, S.A, Osmundson, J.S, Montero-Diaz, C.M, Hochschild, A.
登録日2012-07-23
公開日2013-08-07
実験手法X-RAY DIFFRACTION (3.001 Å)
主引用文献Promoter-specific transcription inhibition in Staphylococcus aureus by a phage protein.
Cell(Cambridge,Mass.), 151, 2012
4G6D
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BU of 4g6d by Molmil
G1 ORF67 / Staphyloccus aureus sigmaA domain 4 complex
分子名称: ORF067, RNA polymerase sigma factor rpoD
著者Darst, S.A, Osmundson, J.S.
登録日2012-07-18
公開日2013-01-23
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.9971 Å)
主引用文献Promoter-specific transcription inhibition in Staphylococcus aureus by a phage protein.
Cell(Cambridge,Mass.), 151, 2012
4G94
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BU of 4g94 by Molmil
G1 ORF67 / Staphyloccus aureus sigmaA domain 4 complex
分子名称: ORF067, RNA polymerase sigma factor rpoD
著者Darst, S.A, Osmundson, J.S, Montero-Diaz, C.M, Hochschild, A.
登録日2012-07-23
公開日2013-01-23
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.9971 Å)
主引用文献Promoter-specific transcription inhibition in Staphylococcus aureus by a phage protein.
Cell(Cambridge,Mass.), 151, 2012
2Z2S
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BU of 2z2s by Molmil
Crystal Structure of Rhodobacter sphaeroides SigE in complex with the anti-sigma ChrR
分子名称: Anti-Sigma factor ChrR, transcriptional activator ChrR, RpoE, ...
著者Darst, S.A, Campbell, E.A.
登録日2007-05-26
公開日2008-02-05
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献A conserved structural module regulates transcriptional responses to diverse stress signals in bacteria.
Mol.Cell, 27, 2007
5E18
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BU of 5e18 by Molmil
T. thermophilus transcription initiation complex having a YYY discriminator sequence and a nontemplate-strand length corresponding to TSS selection at position 8 (RPo-CCC-8)
分子名称: DNA (28-MER), DNA (5'-D(*CP*CP*T*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*G)-3'), DNA-directed RNA polymerase subunit alpha, ...
著者Zhang, Y, Ebright, R.H.
登録日2015-09-29
公開日2016-03-09
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection.
Science, 351, 2016
1IW7
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BU of 1iw7 by Molmil
Crystal structure of the RNA polymerase holoenzyme from Thermus thermophilus at 2.6A resolution
分子名称: LEAD (II) ION, MAGNESIUM ION, RNA polymerase alpha subunit, ...
著者RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-04-22
公開日2002-06-26
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution
NATURE, 417, 2002
5IPN
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BU of 5ipn by Molmil
SigmaS-transcription initiation complex with 4-nt nascent RNA
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Liu, B, Zuo, Y, Steitz, T.A.
登録日2016-03-09
公開日2016-03-30
最終更新日2016-06-22
実験手法X-RAY DIFFRACTION (4.61 Å)
主引用文献Structures of E. coli sigma S-transcription initiation complexes provide new insights into polymerase mechanism.
Proc.Natl.Acad.Sci.USA, 113, 2016
1SMY
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BU of 1smy by Molmil
Structural basis for transcription regulation by alarmone ppGpp
分子名称: DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ...
著者Artsimovitch, I, Patlan, V, Sekine, S, Vassylyeva, M.N, Hosaka, T, Ochi, K, Yokoyama, S, Vassylyev, D.G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-03-10
公開日2004-05-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural basis for transcription regulation by alarmone ppGpp
Cell(Cambridge,Mass.), 117, 2004
7P5X
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BU of 7p5x by Molmil
Mycobacterial RNAP with transcriptional activator PafBC
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Mueller, A.U, Kummer, E, Schilling, C.M, Ban, N, Weber-Ban, E.
登録日2021-07-15
公開日2021-12-22
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Transcriptional control of mycobacterial DNA damage response by sigma adaptation.
Sci Adv, 7, 2021
8FTD
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BU of 8ftd by Molmil
Structure of Escherichia coli CedA in complex with transcription initiation complex
分子名称: CHAPSO, Cell division activator CedA, DNA-directed RNA polymerase subunit alpha, ...
著者Liu, M, Vassyliev, N, Nudler, E.
登録日2023-01-11
公開日2024-01-10
最終更新日2024-01-31
実験手法ELECTRON MICROSCOPY (2.76 Å)
主引用文献General transcription factor from Escherichia coli with a distinct mechanism of action.
Nat.Struct.Mol.Biol., 31, 2024
2W48
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BU of 2w48 by Molmil
Crystal structure of the Full-length Sorbitol Operon Regulator SorC from Klebsiella pneumoniae
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, ...
著者de Sanctis, D, McVey, C.E, Enguita, F.J, Carrondo, M.A.
登録日2008-11-21
公開日2009-05-05
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal Structure of the Full-Length Sorbitol Operon Regulator Sorc from Klebsiella Pneumoniae: Structural Evidence for a Novel Transcriptional Regulation Mechanism.
J.Mol.Biol., 387, 2009
3T72
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BU of 3t72 by Molmil
PhoB(E)-Sigma70(4)-(RNAP-Betha-flap-tip-helix)-DNA Transcription Activation Sub-Complex
分子名称: PHO BOX DNA (STRAND 1), PHO BOX DNA (STRAND 2), Phosphate regulon transcriptional regulatory protein phoB, ...
著者Blanco, A.G, Canals, A, Bernues, J, Sola, M, Coll, M.
登録日2011-07-29
公開日2011-09-21
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (4.33 Å)
主引用文献The structure of a transcription activation subcomplex reveals how sigma (70) is recruited to PhoB promoters.
Embo J., 30, 2011
2CW0
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BU of 2cw0 by Molmil
Crystal structure of Thermus thermophilus RNA polymerase holoenzyme at 3.3 angstroms resolution
分子名称: DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ...
著者Tuske, S, Sarafianos, S.G, Wang, X, Hudson, B, Sineva, E, Mukhopadhyay, J, Birktoft, J.J, Leroy, O, Ismail, S, Clark Jr, A.D, Dharia, C, Napoli, A, Laptenko, O, Lee, J, Borukhov, S, Ebright, R.H, Arnold, E.
登録日2005-06-15
公開日2005-09-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Inhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation
Cell(Cambridge,Mass.), 122, 2005
3N97
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BU of 3n97 by Molmil
RNA polymerase alpha C-terminal domain (E. coli) and sigma region 4 (T. aq. mutant) bound to (UP,-35 element) DNA
分子名称: ACETATE ION, DNA (5'-D(*CP*CP*AP*TP*GP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*TP*TP*TP*TP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*AP*AP*AP*AP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*CP*AP*TP*GP*G)-3'), ...
著者Lara-Gonzalez, S, Birktoft, J.J, Lawson, C.L.
登録日2010-05-28
公開日2011-06-08
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3.252 Å)
主引用文献The RNA Polymerase alpha Subunit Recognizes the DNA Shape of the Upstream Promoter Element.
Biochemistry, 59, 2020
3WOD
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BU of 3wod by Molmil
RNA polymerase-gp39 complex
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Tagami, S, Sekine, S, Minakhin, L, Esyunina, D, Akasaka, R, Shirouzu, M, Kulbachinskiy, A, Severinov, K, Yokoyama, S.
登録日2013-12-26
公開日2014-03-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structural basis for promoter specificity switching of RNA polymerase by a phage factor.
Genes Dev., 28, 2014

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