Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 424 件

4DDI
DownloadVisualize
BU of 4ddi by Molmil
Crystal structure of human OTUB1/UbcH5b~Ub/Ub
分子名称: Polyubiquitin-C, Ubiquitin-conjugating enzyme E2 D2, Ubiquitin thioesterase OTUB1
著者Juang, Y.C, Sanches, M, Sicheri, F.
登録日2012-01-18
公開日2012-02-22
最終更新日2017-11-15
実験手法X-RAY DIFFRACTION (3.802 Å)
主引用文献OTUB1 Co-opts Lys48-Linked Ubiquitin Recognition to Suppress E2 Enzyme Function.
Mol.Cell, 45, 2012
5A31
DownloadVisualize
BU of 5a31 by Molmil
Structure of the human APC-Cdh1-Hsl1-UbcH10 complex.
分子名称: ANAPHASE-PROMOTING COMPLEX SUBUNIT 1, ANAPHASE-PROMOTING COMPLEX SUBUNIT 10, ANAPHASE-PROMOTING COMPLEX SUBUNIT 11, ...
著者Chang, L, Zhang, Z, Yang, J, Mclaughlin, S.H, Barford, D.
登録日2015-05-26
公開日2015-11-18
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Atomic Structure of the Apc/C and its Mechanism of Protein Ubiquitination.
Nature, 522, 2015
4BWF
DownloadVisualize
BU of 4bwf by Molmil
Pex4p-Pex22p disulphide bond mutant
分子名称: 1,2-ETHANEDIOL, PEROXISOME ASSEMBLY PROTEIN 22, UBIQUITIN-CONJUGATING ENZYME E2-21 KDA
著者Williams, C, van den Berg, M, Stanley, W.A, Wilmanns, M, Distel, B.
登録日2013-07-01
公開日2013-07-17
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.23 Å)
主引用文献A Disulphide Bond in the E2 Enzyme Pex4P Modulates Ubiquitin-Conjugating Activity
Sci.Rep., 3, 2013
4ORH
DownloadVisualize
BU of 4orh by Molmil
Crystal structure of RNF8 bound to the UBC13/MMS2 heterodimer
分子名称: E3 ubiquitin-protein ligase RNF8, Ubiquitin-conjugating enzyme E2 N, Ubiquitin-conjugating enzyme E2 variant 2, ...
著者Campbell, S.J, Edwards, R.A, Glover, J.N.M.
登録日2014-02-11
公開日2014-02-26
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (4.802 Å)
主引用文献Molecular insights into the function of RING finger (RNF)-containing proteins hRNF8 and hRNF168 in Ubc13/Mms2-dependent ubiquitylation.
J.Biol.Chem., 287, 2012
4DHZ
DownloadVisualize
BU of 4dhz by Molmil
The structure of h/ceOTUB1-ubiquitin aldehyde-UBC13~Ub
分子名称: Ubiquitin, Ubiquitin aldehyde, Ubiquitin thioesterase otubain-like, ...
著者Wiener, R, Zhang, X, Wang, T, Wolberger, C.
登録日2012-01-30
公開日2012-02-22
最終更新日2017-11-15
実験手法X-RAY DIFFRACTION (3.11 Å)
主引用文献The mechanism of OTUB1-mediated inhibition of ubiquitination.
Nature, 483, 2012
5BNB
DownloadVisualize
BU of 5bnb by Molmil
Crystal structure of a Ube2S-ubiquitin conjugate
分子名称: Polyubiquitin-B, Ubiquitin-conjugating enzyme E2 S
著者Lorenz, S.G, Feiler, C.G, Kuriyan, J.
登録日2015-05-25
公開日2016-02-17
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Crystal Structure of a Ube2S-Ubiquitin Conjugate.
Plos One, 11, 2016
4TKP
DownloadVisualize
BU of 4tkp by Molmil
Complex of Ubc13 with the RING domain of the TRIM5alpha retroviral restriction factor
分子名称: SULFATE ION, Tripartite motif-containing protein 5, Ubiquitin-conjugating enzyme E2 N, ...
著者Johnson, R, Taylor, A.B, Hart, P.J, Ivanov, D.N.
登録日2014-05-27
公開日2015-07-22
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献RING Dimerization Links Higher-Order Assembly of TRIM5 alpha to Synthesis of K63-Linked Polyubiquitin.
Cell Rep, 12, 2015
4DDG
DownloadVisualize
BU of 4ddg by Molmil
Crystal structure of human OTUB1/UbcH5b~Ub/Ub
分子名称: Polyubiquitin-C, Ubiquitin-conjugating enzyme E2 D2, Ubiquitin thioesterase OTUB1
著者Juang, Y.C, Sanches, M, Sicheri, F.
登録日2012-01-18
公開日2012-02-22
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.2987 Å)
主引用文献OTUB1 Co-opts Lys48-Linked Ubiquitin Recognition to Suppress E2 Enzyme Function.
Mol.Cell, 45, 2012
4S3O
DownloadVisualize
BU of 4s3o by Molmil
PCGF5-RING1B-UbcH5c complex
分子名称: E3 ubiquitin-protein ligase RING2, Polycomb group RING finger protein 5, Ubiquitin-conjugating enzyme E2 D3, ...
著者Taherbhoy, A.M, Cochran, A.G.
登録日2015-03-23
公開日2015-07-15
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献BMI1-RING1B is an autoinhibited RING E3 ubiquitin ligase.
Nat Commun, 6, 2015
5D1L
DownloadVisualize
BU of 5d1l by Molmil
Crystal Structure of UbcH5B in Complex with the RING-U5BR Fragment of AO7 (Y165A)
分子名称: DI(HYDROXYETHYL)ETHER, E3 ubiquitin-protein ligase RNF25, OXALATE ION, ...
著者Liang, Y.-H, Li, S, Weissman, A.M, Ji, X.
登録日2015-08-04
公開日2015-10-28
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.618 Å)
主引用文献Insights into Ubiquitination from the Unique Clamp-like Binding of the RING E3 AO7 to the E2 UbcH5B.
J.Biol.Chem., 290, 2015
5D1K
DownloadVisualize
BU of 5d1k by Molmil
Crystal Structure of UbcH5B in Complex with the RING-U5BR Fragment of AO7
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, E3 ubiquitin-protein ligase RNF25, ...
著者Liang, Y.-H, Li, S, Weissman, A.M, Ji, X.
登録日2015-08-04
公開日2015-10-28
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Insights into Ubiquitination from the Unique Clamp-like Binding of the RING E3 AO7 to the E2 UbcH5B.
J.Biol.Chem., 290, 2015
5D0K
DownloadVisualize
BU of 5d0k by Molmil
Structure of UbE2D2:RNF165:Ub complex
分子名称: Polyubiquitin-B, RING finger protein 165, Ubiquitin-conjugating enzyme E2 D2, ...
著者Wright, J.D, Day, C.L, Mace, P.D.
登録日2015-08-03
公開日2015-12-09
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Secondary ubiquitin-RING docking enhances Arkadia and Ark2C E3 ligase activity.
Nat.Struct.Mol.Biol., 23, 2016
5D0M
DownloadVisualize
BU of 5d0m by Molmil
Structure of UbE2D2:RNF165:Ub complex
分子名称: PHOSPHATE ION, Polyubiquitin-B, RING finger protein 165, ...
著者Wright, J.D, Day, C.L, Mace, P.D.
登録日2015-08-03
公開日2015-12-09
最終更新日2016-01-20
実験手法X-RAY DIFFRACTION (1.913 Å)
主引用文献Secondary ubiquitin-RING docking enhances Arkadia and Ark2C E3 ligase activity.
Nat.Struct.Mol.Biol., 23, 2016
4CCG
DownloadVisualize
BU of 4ccg by Molmil
Structure of an E2-E3 complex
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, AMMONIUM ION, CHLORIDE ION, ...
著者Hodson, C, Purkiss, A, Walden, H.
登録日2013-10-22
公開日2014-01-08
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of the Human Fancl Ring-Ube2T Complex Reveals Determinants of Cognate E3-E2 Selection.
Structure, 22, 2014
7ZJ3
DownloadVisualize
BU of 7zj3 by Molmil
Structure of TRIM2 RING domain in complex with UBE2D1~Ub conjugate
分子名称: Polyubiquitin-C, Tripartite motif-containing protein 2, Ubiquitin-conjugating enzyme E2 D1, ...
著者Esposito, D, Garza-Garcia, A, Dudley-Fraser, J, Rittinger, K.
登録日2022-04-08
公開日2022-11-30
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.53 Å)
主引用文献Divergent self-association properties of paralogous proteins TRIM2 and TRIM3 regulate their E3 ligase activity.
Nat Commun, 13, 2022
2GRR
DownloadVisualize
BU of 2grr by Molmil
Crystal Structure of human RanGAP1-Ubc9-D127S
分子名称: Ran GTPase-activating protein 1, Ubiquitin-conjugating enzyme E2 I
著者Yunus, A.A, Lima, C.D.
登録日2006-04-24
公開日2006-05-30
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.
Nat.Struct.Mol.Biol., 13, 2006
8ATX
DownloadVisualize
BU of 8atx by Molmil
Cryo-EM structure of human BIRC6 - no substrate
分子名称: Baculoviral IAP repeat-containing protein 6, ZINC ION
著者Ehrmann, J.F, Grabarczyk, D.B, Clausen, T.
登録日2022-08-24
公開日2023-02-15
最終更新日2023-03-29
実験手法ELECTRON MICROSCOPY (7 Å)
主引用文献Structural basis for regulation of apoptosis and autophagy by the BIRC6/SMAC complex.
Science, 379, 2023
8ATU
DownloadVisualize
BU of 8atu by Molmil
Cryo-EM structure of human BIRC6
分子名称: Baculoviral IAP repeat-containing protein 6, ZINC ION
著者Ehrmann, J.F, Grabarczyk, D.B, Clausen, T.
登録日2022-08-24
公開日2023-02-15
最終更新日2023-03-29
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural basis for regulation of apoptosis and autophagy by the BIRC6/SMAC complex.
Science, 379, 2023
8AUW
DownloadVisualize
BU of 8auw by Molmil
Cryo-EM structure of human BIRC6 in complex with SMAC.
分子名称: Baculoviral IAP repeat-containing protein 6, Diablo IAP-binding mitochondrial protein, ZINC ION
著者Ehrmann, J.F, Grabarczyk, D.B, Clausen, T.
登録日2022-08-25
公開日2023-02-15
最終更新日2023-05-24
実験手法ELECTRON MICROSCOPY (7.2 Å)
主引用文献Structural basis for regulation of apoptosis and autophagy by the BIRC6/SMAC complex.
Science, 379, 2023
8AUK
DownloadVisualize
BU of 8auk by Molmil
Cryo-EM structure of human BIRC6 in complex with HTRA2.
分子名称: Baculoviral IAP repeat-containing protein 6, Serine protease HTRA2, mitochondrial, ...
著者Ehrmann, J.F, Grabarczyk, D.B, Clausen, T.
登録日2022-08-25
公開日2023-02-15
最終更新日2023-05-24
実験手法ELECTRON MICROSCOPY (6.2 Å)
主引用文献Structural basis for regulation of apoptosis and autophagy by the BIRC6/SMAC complex.
Science, 379, 2023
2KJH
DownloadVisualize
BU of 2kjh by Molmil
NMR based structural model of the UBCH8-UBIQUITIN complex
分子名称: Ubiquitin, Ubiquitin/ISG15-conjugating enzyme E2 L6
著者Serniwka, S.A, Shaw, G.S.
登録日2009-05-28
公開日2009-12-08
最終更新日2021-10-13
実験手法SOLUTION NMR
主引用文献The structure of the UbcH8-ubiquitin complex shows a unique ubiquitin interaction site.
Biochemistry, 48, 2009
8ATM
DownloadVisualize
BU of 8atm by Molmil
Structure of the giant inhibitor of apoptosis, BIRC6 (composite map)
分子名称: Baculoviral IAP repeat-containing protein 6
著者Dietz, L, Elliott, P.R.
登録日2022-08-23
公開日2023-03-08
最終更新日2023-03-29
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural basis for SMAC-mediated antagonism of caspase inhibition by the giant ubiquitin ligase BIRC6.
Science, 379, 2023
8ATO
DownloadVisualize
BU of 8ato by Molmil
Structure of the giant inhibitor of apoptosis, BIRC6 bound to the regulator SMAC
分子名称: Baculoviral IAP repeat-containing protein 6, Diablo IAP-binding mitochondrial protein
著者Dietz, L, Elliott, P.R.
登録日2022-08-23
公開日2023-03-08
最終更新日2023-03-29
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structural basis for SMAC-mediated antagonism of caspase inhibition by the giant ubiquitin ligase BIRC6.
Science, 379, 2023
8B3I
DownloadVisualize
BU of 8b3i by Molmil
CRL4CSA-E2-Ub (state 2)
分子名称: Cullin-4A, DNA damage-binding protein 1, DNA excision repair protein ERCC-8, ...
著者Kokic, G, Cramer, P.
登録日2022-09-16
公開日2023-09-27
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献C(N)RL4CSA-E2-Ub (state 2)
To Be Published
8AMS
DownloadVisualize
BU of 8ams by Molmil
Complex of human TRIM2 RING domain, UBCH5C, and Ubiquitin
分子名称: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, GLYCEROL, Polyubiquitin-C, ...
著者Perez-Borrajero, C, Kotova, I, Murciano, B, Hennig, J.
登録日2022-08-04
公開日2023-11-15
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural and biophysical studies of TRIM2 and TRIM3
To Be Published

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon