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PDB: 296 件
6Q00
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BU of 6q00 by Molmil
TDP2 UBA Domain Bound to Ubiquitin at 0.85 Angstroms Resolution, Crystal Form 1
分子名称: POTASSIUM ION, Tyrosyl-DNA phosphodiesterase 2, Ubiquitin
著者Schellenberg, M.J, Krahn, J.M, Williams, R.S.
登録日2019-08-01
公開日2020-04-29
最終更新日2020-06-24
実験手法X-RAY DIFFRACTION (0.85 Å)
主引用文献Ubiquitin stimulated reversal of topoisomerase 2 DNA-protein crosslinks by TDP2.
Nucleic Acids Res., 48, 2020
3NHE
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BU of 3nhe by Molmil
High Resolution Structure (1.26A) of USP2a in Complex with Ubiquitin
分子名称: Ubiquitin, Ubiquitin carboxyl-terminal hydrolase 2, ZINC ION
著者Schormann, N, DeLucas, L.J, Powell McCombs, D.
登録日2010-06-14
公開日2010-06-30
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.26 Å)
主引用文献High resolution structure of USP2a in complex with ubiquitin
To be Published
5NL4
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BU of 5nl4 by Molmil
Crystal structure of Zn1.3-E16V human ubiquitin (hUb) mutant adduct, from a solution 35 mM zinc acetate/1.3 mM E16V hUb
分子名称: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ...
著者Fermani, S, Falini, G.
登録日2017-04-04
公開日2017-04-26
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.32 Å)
主引用文献Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium.
Chemistry, 24, 2018
1OGW
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BU of 1ogw by Molmil
Synthetic Ubiquitin with fluoro-Leu at 50 and 67
分子名称: UBIQUITIN
著者Alexeev, D, Ramage, R, Young, D.W, Sawyer, L.
登録日2003-05-13
公開日2003-05-30
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.32 Å)
主引用文献Synthesis, Structural and Biological Studies of Ubiquitin Mutants Containing (2S, 4S)-5-Fluoroleucine Residues Strategically Placed in the Hydrophobic Core
Chembiochem, 4, 2003
2GBJ
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BU of 2gbj by Molmil
Crystal Structure of the 9-10 8 Glycine Insertion Mutant of Ubiquitin.
分子名称: Ubiquitin
著者Ferraro, D.M, Ferraro, D.J, Ramaswamy, S, Robertson, A.D.
登録日2006-03-10
公開日2006-05-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Structures of Ubiquitin Insertion Mutants Support Site-specific Reflex Response to Insertions Hypothesis.
J.Mol.Biol., 359, 2006
4HK2
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BU of 4hk2 by Molmil
U7Ub25.2540
分子名称: SULFATE ION, Ubiquitin
著者Murray, J.M, Rouge, L.
登録日2012-10-14
公開日2012-11-21
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Potent and selective inhibitors of USP7/HAUSP activity by protein conformational stabilization
to be published
8ST7
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BU of 8st7 by Molmil
Structure of E3 ligase VsHECT bound to ubiquitin
分子名称: E3 ubiquitin-protein ligase SopA-like catalytic domain-containing protein, Ubiquitin, prop-2-en-1-amine
著者Franklin, T.G, Pruneda, J.N.
登録日2023-05-09
公開日2023-07-12
最終更新日2024-01-03
実験手法X-RAY DIFFRACTION (1.44 Å)
主引用文献Bacterial ligases reveal fundamental principles of polyubiquitin specificity.
Mol.Cell, 83, 2023
7UV5
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BU of 7uv5 by Molmil
The crystal structure of Papain-Like Protease of SARS CoV-2, C111S/D286N mutant, in complex with a Lys48-linked di-ubiquitin
分子名称: 1,2-ETHANEDIOL, Papain-like protease nsp3, Ubiquitin, ...
著者Osipiuk, J, Tesar, C, Endres, M, Lanham, B.T, Wydorski, P, Fushman, D, Joachimiak, L, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2022-04-29
公開日2022-05-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin.
Nat Commun, 14, 2023
1XD3
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BU of 1xd3 by Molmil
Crystal structure of UCHL3-UbVME complex
分子名称: MAGNESIUM ION, METHYL 4-AMINOBUTANOATE, UBC protein, ...
著者Misaghi, S, Galardy, P.J, Meester, W.J.N, Ovaa, H, Ploegh, H.L, Gaudet, R.
登録日2004-09-03
公開日2004-11-23
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Structure of the Ubiquitin Hydrolase UCH-L3 Complexed with a Suicide Substrate
J.Biol.Chem., 280, 2005
4IUM
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BU of 4ium by Molmil
Equine arteritis virus papain-like protease 2 (PLP2) covalently bound to ubiquitin
分子名称: GLYCEROL, Ubiquitin, ZINC ION, ...
著者Bailey-Elkin, B.A, James, T.W, Mark, B.L.
登録日2013-01-21
公開日2013-02-13
最終更新日2013-03-20
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Deubiquitinase function of arterivirus papain-like protease 2 suppresses the innate immune response in infected host cells.
Proc.Natl.Acad.Sci.USA, 110, 2013
5NLF
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BU of 5nlf by Molmil
Crystal structure of Zn2.7-E16V human ubiquitin (hUb) mutant adduct, from a solution 100 mM zinc acetate/1.3 mM E16V hUb
分子名称: ACETATE ION, Polyubiquitin-C, ZINC ION
著者Fermani, S, Falini, G.
登録日2017-04-04
公開日2017-05-03
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium.
Chemistry, 24, 2018
4UN2
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BU of 4un2 by Molmil
Crystal structure of the UBA domain of Dsk2 in complex with Ubiquitin
分子名称: UBIQUITIN, UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2
著者Michielssens, S, Peters, J.H, Ban, D, Pratihar, S, Seeliger, D, Sharma, M, Giller, K, Sabo, T.M, Becker, S, Lee, D, Griesinger, C, de Groot, B.L.
登録日2014-05-23
公開日2014-08-27
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献A Designed Conformational Shift to Control Protein Binding Specificity.
Angew.Chem.Int.Ed.Engl., 53, 2014
4V3L
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BU of 4v3l by Molmil
RNF38-UB-UbcH5B-Ub complex
分子名称: 1,2-ETHANEDIOL, E3 UBIQUITIN-PROTEIN LIGASE RNF38, POLYUBIQUITIN-C, ...
著者Buetow, L, Gabrielsen, M, Anthony, N.G, Dou, H, Patel, A, Aitkenhead, H, Sibbet, G.J, Smith, B.O, Huang, D.T.
登録日2014-10-20
公開日2015-04-08
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Activation of a Primed Ring E3-E2-Ubiquitin Complex by Non-Covalent Ubiquitin.
Mol.Cell, 58, 2015
5NLI
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BU of 5nli by Molmil
Crystal structure of Zn2-E16V human ubiquitin (hUb) mutant adduct, from a solution 35 mM zinc acetate/10% v/v TFE/1.3 mM E16V hUb
分子名称: 1,2-ETHANEDIOL, ACETATE ION, Polyubiquitin-C, ...
著者Fermani, S, Falini, G.
登録日2017-04-04
公開日2017-05-03
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium.
Chemistry, 24, 2018
2GBM
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BU of 2gbm by Molmil
Crystal Structure of the 35-36 8 Glycine Insertion Mutant of Ubiquitin
分子名称: ARSENIC, Ubiquitin
著者Ferraro, D.M, Ferraro, D.J, Ramaswamy, S, Robertson, A.D.
登録日2006-03-10
公開日2006-05-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structures of Ubiquitin Insertion Mutants Support Site-specific Reflex Response to Insertions Hypothesis.
J.Mol.Biol., 359, 2006
3BY4
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BU of 3by4 by Molmil
Structure of Ovarian Tumor (OTU) domain in complex with Ubiquitin
分子名称: 3-AMINOPROPANE, Ubiquitin, Ubiquitin thioesterase OTU1
著者Messick, T.E, Marmorstein, R.
登録日2008-01-15
公開日2008-02-19
最終更新日2017-10-25
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structural basis for ubiquitin recognition by the Otu1 ovarian tumor domain protein
J.Biol.Chem., 283, 2008
2ZCB
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BU of 2zcb by Molmil
Crystal Structure of ubiquitin P37A/P38A
分子名称: Ubiquitin, ZINC ION
著者Kitahara, R, Tanaka, T, Sakata, E, Yamaguchi, Y, Kato, K, Yokoyama, S.
登録日2007-11-08
公開日2007-11-20
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure of ubiquitin P37A/P38A
To be published
2GBN
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BU of 2gbn by Molmil
Crystal Structure of the 35-36 8 Glycine Insertion Mutant of Ubiquitin
分子名称: Ubiquitin
著者Ferraro, D.M, Ferraro, D.J, Ramaswamy, S, Robertson, A.D.
登録日2006-03-10
公開日2006-05-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structures of Ubiquitin Insertion Mutants Support Site-specific Reflex Response to Insertions Hypothesis.
J.Mol.Biol., 359, 2006
5OXH
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BU of 5oxh by Molmil
C-terminally retracted ubiquitin T66V/L67N mutant
分子名称: SULFATE ION, Ubiquitin T66V/L67N mutant
著者Gladkova, C, Schubert, A.F, Wagstaff, J.L, Pruneda, J.P, Freund, S.M.V, Komander, D.
登録日2017-09-06
公開日2017-11-22
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.601 Å)
主引用文献An invisible ubiquitin conformation is required for efficient phosphorylation by PINK1.
EMBO J., 36, 2017
5OXI
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BU of 5oxi by Molmil
C-terminally retracted ubiquitin L67S mutant
分子名称: SULFATE ION, Ubiquitin L67S mutant
著者Gladkova, C.G, Schubert, A.F, Wagstaff, J.L, Pruneda, J.N, Freund, S.M.V, Komander, D.
登録日2017-09-06
公開日2017-11-22
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献An invisible ubiquitin conformation is required for efficient phosphorylation by PINK1.
EMBO J., 36, 2017
4K1R
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BU of 4k1r by Molmil
Crystal structure of Schizosaccharomyces pombe sst2 catalytic domain and Ubiquitin
分子名称: 1,2-ETHANEDIOL, AMSH-like protease sst2, CHLORIDE ION, ...
著者Shrestha, R.K, Das, C.
登録日2013-04-05
公開日2014-04-23
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.632 Å)
主引用文献Insights into the Mechanism of Deubiquitination by JAMM Deubiquitinases from Cocrystal Structures of the Enzyme with the Substrate and Product.
Biochemistry, 53, 2014
5AF5
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BU of 5af5 by Molmil
Structure of Lys33-linked triUb S.G. P 212121
分子名称: POLYUBIQUITIN-C
著者Michel, M.A, Elliott, P.R, Swatek, K.N, Simicek, M, Pruneda, J.N, Wagstaff, J.L, Freund, S.M.V, Komander, D.
登録日2015-01-19
公開日2015-03-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Assembly and Specific Recognition of K29- and K33-Linked Polyubiquitin.
Mol.Cell, 58, 2015
3VUX
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BU of 3vux by Molmil
Crystal structure of A20 ZF7 in complex with linear ubiquitin, form II
分子名称: 1,2-ETHANEDIOL, POTASSIUM ION, Polyubiquitin-C, ...
著者Nishimasu, H, Ishitani, R, Nureki, O.
登録日2012-07-09
公開日2013-02-13
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.699 Å)
主引用文献Specific recognition of linear polyubiquitin by A20 zinc finger 7 is involved in NF-kappaB regulation
Embo J., 31, 2012
6B7M
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BU of 6b7m by Molmil
Crystal structure of Legionella effector sdeD (lpg2509) in complex with Ubiquitin
分子名称: Polyubiquitin-C, SdeD (lpg2509)
著者Mao, Y, Akturk, A, Wasilko, J.
登録日2017-10-04
公開日2018-04-18
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Mechanism of phosphoribosyl-ubiquitination mediated by a single Legionella effector.
Nature, 557, 2018
5NMC
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BU of 5nmc by Molmil
Crystal structure of Zn3-hUb(human ubiquitin) adduct from a solution 70 mM zinc acetate/20% v/v TFE/1.3 mM hUb
分子名称: ACETATE ION, Polyubiquitin-C, ZINC ION
著者Fermani, S, Falini, G.
登録日2017-04-05
公開日2017-05-03
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium.
Chemistry, 24, 2018

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