6KBE
| Structure of Deubiquitinase | 分子名称: | Polyubiquitin-C, Ubiquitin thioesterase | 著者 | Lu, L.N, Liu, L, Wang, F. | 登録日 | 2019-06-24 | 公開日 | 2020-06-24 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.339 Å) | 主引用文献 | Met1-specific motifs conserved in OTUB subfamily of green plants enable rice OTUB1 to hydrolyse Met1 ubiquitin chains Nat Commun, 13, 2022
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6DGF
| Ubiquitin Variant bound to USP2 | 分子名称: | Polyubiquitin-B, SULFATE ION, Ubiquitin carboxyl-terminal hydrolase 2, ... | 著者 | Manczyk, N, Sicheri, F. | 登録日 | 2018-05-17 | 公開日 | 2019-02-13 | 最終更新日 | 2023-10-11 | 実験手法 | X-RAY DIFFRACTION (2.34 Å) | 主引用文献 | Yeast Two-Hybrid Analysis for Ubiquitin Variant Inhibitors of Human Deubiquitinases. J. Mol. Biol., 431, 2019
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5OHK
| Crystal structure of USP30 in covalent complex with ubiquitin propargylamide (high resolution) | 分子名称: | Polyubiquitin-B, Ubiquitin carboxyl-terminal hydrolase 30,Ubiquitin carboxyl-terminal hydrolase 30,Ubiquitin carboxyl-terminal hydrolase 30, ZINC ION, ... | 著者 | Gersch, M, Komander, D. | 登録日 | 2017-07-17 | 公開日 | 2017-09-20 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.34 Å) | 主引用文献 | Mechanism and regulation of the Lys6-selective deubiquitinase USP30. Nat. Struct. Mol. Biol., 24, 2017
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6UMS
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4DHJ
| The structure of a ceOTUB1 ubiquitin aldehyde UBC13~Ub complex | 分子名称: | Ubiquitin, Ubiquitin aldehyde, Ubiquitin thioesterase otubain-like, ... | 著者 | Wiener, R, Zhang, X, Wang, T, Wolberger, C. | 登録日 | 2012-01-27 | 公開日 | 2012-02-22 | 最終更新日 | 2017-11-15 | 実験手法 | X-RAY DIFFRACTION (2.35 Å) | 主引用文献 | The mechanism of OTUB1-mediated inhibition of ubiquitination. Nature, 483, 2012
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7JXV
| ANTH domain of CALM (clathrin-assembly lymphoid myeloid leukemia protein) bound to ubiquitin | 分子名称: | Phosphatidylinositol-binding clathrin assembly protein, Ubiquitin | 著者 | Pashkova, N, Gakhar, L, Schnicker, N.J, Piper, R.C. | 登録日 | 2020-08-28 | 公開日 | 2021-08-04 | 最終更新日 | 2023-10-18 | 実験手法 | X-RAY DIFFRACTION (2.35 Å) | 主引用文献 | ANTH domains within CALM, HIP1R, and Sla2 recognize ubiquitin internalization signals. Elife, 10, 2021
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3OFI
| Crystal structure of human insulin-degrading enzyme in complex with ubiquitin | 分子名称: | 1,4-DIETHYLENE DIOXIDE, Insulin-degrading enzyme, Ubiquitin, ... | 著者 | Kalas, V, Ralat, L.A, Tang, W.-J. | 登録日 | 2010-08-15 | 公開日 | 2010-09-08 | 最終更新日 | 2023-09-06 | 実験手法 | X-RAY DIFFRACTION (2.35 Å) | 主引用文献 | Ubiquitin is a novel substrate for human insulin-degrading enzyme. J.Mol.Biol., 406, 2011
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4BOS
| Structure of OTUD2 OTU domain in complex with Ubiquitin K11-linked peptide | 分子名称: | MAGNESIUM ION, NITRATE ION, OTUD2, ... | 著者 | Mevissen, T.E.T, Hospenthal, M.K, Geurink, P.P, Elliott, P.R, Akutsu, M, Arnaudo, N, Ekkebus, R, Kulathu, Y, Wauer, T, El Oualid, F, Freund, S.M.V, Ovaa, H, Komander, D. | 登録日 | 2013-05-22 | 公開日 | 2013-07-24 | 最終更新日 | 2023-12-20 | 実験手法 | X-RAY DIFFRACTION (2.35 Å) | 主引用文献 | Otu Deubiquitinases Reveal Mechanisms of Linkage Specificity and Enable Ubiquitin Chain Restriction Analysis. Cell(Cambridge,Mass.), 154, 2013
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3UGB
| UbcH5c~Ubiquitin Conjugate | 分子名称: | GLYCEROL, Polyubiquitin-C, Ubiquitin-conjugating enzyme E2 D3 | 著者 | Page, R.C, Pruneda, J.N, Klevit, R.E, Misra, S. | 登録日 | 2011-11-02 | 公開日 | 2012-05-16 | 最終更新日 | 2023-09-13 | 実験手法 | X-RAY DIFFRACTION (2.35 Å) | 主引用文献 | Structural insights into the conformation and oligomerization of E2~ubiquitin conjugates. Biochemistry, 51, 2012
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6ASR
| REV1 UBM2 domain complex with ubiquitin | 分子名称: | DNA repair protein REV1, NICKEL (II) ION, Ubiquitin | 著者 | Miller, D.J. | 登録日 | 2017-08-25 | 公開日 | 2018-06-20 | 最終更新日 | 2023-10-04 | 実験手法 | X-RAY DIFFRACTION (2.356 Å) | 主引用文献 | Structures of REV1 UBM2 Domain Complex with Ubiquitin and with a Small-Molecule that Inhibits the REV1 UBM2-Ubiquitin Interaction. J. Mol. Biol., 430, 2018
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5XDP
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5ULK
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7M4M
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3AUL
| Crystal structure of wild-type Lys48-linked diubiquitin in an open conformation | 分子名称: | Polyubiquitin-C | 著者 | Hirano, T, Olivier, S, Yagi, M, Takemoto, E, Hiromoto, T, Satoh, T, Mizushima, T, Kato, K. | 登録日 | 2011-02-09 | 公開日 | 2011-09-07 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.39 Å) | 主引用文献 | Conformational dynamics of wild-type Lys48-linked diubiquitin in solution J.Biol.Chem., 286, 2011
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7MYH
| Ubiquitin variant UbV.k.2 in complex with Ube2k | 分子名称: | GLYCEROL, Ubiquitin variant UbV.k.2, Ubiquitin-conjugating enzyme E2 K | 著者 | Middleton, A.J, Day, C.L, Teyra, J, Sidhu, S.S. | 登録日 | 2021-05-21 | 公開日 | 2021-08-25 | 最終更新日 | 2023-10-18 | 実験手法 | X-RAY DIFFRACTION (2.394 Å) | 主引用文献 | Identification of Ubiquitin Variants That Inhibit the E2 Ubiquitin Conjugating Enzyme, Ube2k. Acs Chem.Biol., 16, 2021
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4KSK
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6A43
| R1EN(5-225)-ubiquitin fusion | 分子名称: | ACETIC ACID, RNA-directed DNA polymerase homolog (R1),Polyubiquitin-C | 著者 | Maita, N. | 登録日 | 2018-06-19 | 公開日 | 2018-10-24 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Crystal Structure Determination of Ubiquitin by Fusion to a Protein That Forms a Highly Porous Crystal Lattice J. Am. Chem. Soc., 140, 2018
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6A44
| R1EN(5-227)-ubiquitin fusion | 分子名称: | ACETIC ACID, RNA-directed DNA polymerase homolog (R1),Polyubiquitin-C | 著者 | Maita, N. | 登録日 | 2018-06-19 | 公開日 | 2018-10-24 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Crystal Structure Determination of Ubiquitin by Fusion to a Protein That Forms a Highly Porous Crystal Lattice J. Am. Chem. Soc., 140, 2018
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3IFW
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5EYA
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1TBE
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7OJX
| E2 UBE2K covalently linked to donor Ub, acceptor di-Ub, and RING E3 primed for K48-linked Ub chain synthesis | 分子名称: | 1,1'-ethane-1,2-diylbis(1H-pyrrole-2,5-dione), E3 ubiquitin-protein ligase RNF38, Polyubiquitin-B, ... | 著者 | Majorek, K.A, Nakasone, M.A, Huang, D.T. | 登録日 | 2021-05-17 | 公開日 | 2022-01-12 | 最終更新日 | 2024-01-31 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Structure of UBE2K-Ub/E3/polyUb reveals mechanisms of K48-linked Ub chain extension. Nat.Chem.Biol., 18, 2022
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8AMS
| Complex of human TRIM2 RING domain, UBCH5C, and Ubiquitin | 分子名称: | 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, GLYCEROL, Polyubiquitin-C, ... | 著者 | Perez-Borrajero, C, Kotova, I, Murciano, B, Hennig, J. | 登録日 | 2022-08-04 | 公開日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Structural and biophysical studies of TRIM2 and TRIM3 To Be Published
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9B0Z
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3U30
| Crystal structure of a linear-specific Ubiquitin fab bound to linear ubiquitin | 分子名称: | Heavy chain Fab, Light chain Fab, linear di-ubiquitin | 著者 | Matsumoto, M.L, Dong, K.C, Yu, C, Phu, L, Gao, X, Hannoush, R.N, Hymowitz, S.G, Kirkpatrick, D.S, Dixit, V.M, Kelley, R.F. | 登録日 | 2011-10-04 | 公開日 | 2012-01-18 | 最終更新日 | 2023-09-13 | 実験手法 | X-RAY DIFFRACTION (2.428 Å) | 主引用文献 | Engineering and structural characterization of a linear polyubiquitin-specific antibody. J.Mol.Biol., 418, 2012
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