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PDB: 395 件

7OE0
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E. coli pre-30S delta rbfA ribosomal subunit class F
分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者Maksimova, E, Korepanov, A, Baymukhametov, T, Kravchenko, O, Stolboushkina, E.
登録日2021-04-30
公開日2021-07-14
実験手法ELECTRON MICROSCOPY (2.69 Å)
主引用文献RbfA Is Involved in Two Important Stages of 30S Subunit Assembly: Formation of the Central Pseudoknot and Docking of Helix 44 to the Decoding Center.
Int J Mol Sci, 22, 2021
6TC3
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BU of 6tc3 by Molmil
Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Innis, C.A, Herrero del Valle, A.
登録日2019-11-05
公開日2020-01-01
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Ornithine capture by a translating ribosome controls bacterial polyamine synthesis.
Nat Microbiol, 5, 2020
6TBV
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BU of 6tbv by Molmil
Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Herrero del Valle, A, Innis, C.A.
登録日2019-11-04
公開日2020-01-01
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Ornithine capture by a translating ribosome controls bacterial polyamine synthesis.
Nat Microbiol, 5, 2020
7ZTA
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Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Leroy, E.C, Perry, T.N, Renault, T.T, Innis, C.A.
登録日2022-05-09
公開日2023-04-12
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Tetracenomycin X sequesters peptidyl-tRNA during translation of QK motifs.
Nat.Chem.Biol., 19, 2023
8EKC
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BU of 8ekc by Molmil
Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Rybak, M.Y, Gagnon, M.G.
登録日2022-09-20
公開日2022-12-07
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Insights into the molecular mechanism of translation inhibition by the ribosome-targeting antibiotic thermorubin.
Nucleic Acids Res., 51, 2023
7N2C
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Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)
分子名称: 1,4-DIAMINOBUTANE, 16S rRNA, 23S rRNA, ...
著者Rundlet, E.J, Holm, M, Schacherl, M, Natchiar, K.S, Altman, R.B, Spahn, C.M.T, Myasnikov, A.G, Blanchard, S.C.
登録日2021-05-28
公開日2021-07-14
最終更新日2021-08-11
実験手法ELECTRON MICROSCOPY (2.72 Å)
主引用文献Structural basis of early translocation events on the ribosome.
Nature, 595, 2021
7AF8
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Bacterial 30S ribosomal subunit assembly complex state E (head domain)
分子名称: 16SrRNA (head domain of the 30S ribosome, 30S ribosomal protein S10, 30S ribosomal protein S13, ...
著者Schedlbauer, A, Iturrioz, I, Ochoa-Lizarralde, B, Diercks, T, Lopez-Alonso, J, Kaminishi, T, Capuni, R, Astigarraga, E, Fucini, P, Connell, S.
登録日2020-09-19
公開日2021-07-07
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.75 Å)
主引用文献A conserved rRNA switch is central to decoding site maturation on the small ribosomal subunit.
Sci Adv, 7, 2021
8P16
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E167K RF2 on E. coli 70S release complex with UGG (Structure I)
分子名称: 1,4-DIAMINOBUTANE, 16S rRNA, 23S rRNA, ...
著者Pundir, S, Larsson, D.S.D, Selmer, M, Sanyal, S.
登録日2023-05-11
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (2.77 Å)
主引用文献The compensatory mechanism of a naturally evolved E167K RF2 counteracting the loss of RF1 in bacteria
To Be Published
8P18
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E167K RF2 on E. coli 70S release complex with UGG (Structure III)
分子名称: 1,4-DIAMINOBUTANE, 16S rRNA, 23S rRNA, ...
著者Pundir, S, Larsson, D.S.D, Selmer, M, Sanyal, S.
登録日2023-05-11
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (2.77 Å)
主引用文献The compensatory mechanism of a naturally evolved E167K RF2 counteracting the loss of RF1 in bacteria
To Be Published
8P17
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E167K RF2 on E. coli 70S release complex with UGG (Structure II)
分子名称: 1,4-DIAMINOBUTANE, 16S RNA, 23S rRNA, ...
著者Pundir, S, Larsson, D.S.D, Selmer, M, Sanyal, S.
登録日2023-05-11
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (2.78 Å)
主引用文献The compensatory mechanism of a naturally evolved E167K RF2 counteracting the loss of RF1 in bacteria
To Be Published
8AM9
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BU of 8am9 by Molmil
Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
分子名称: 16S ribosomal RNA, 2-acetamido-2-deoxy-alpha-D-galactopyranose, 23S ribosomal RNA, ...
著者Koller, T.O, Morici, M, Wilson, D.N.
登録日2022-08-03
公開日2023-03-08
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structural basis for translation inhibition by the glycosylated drosocin peptide.
Nat.Chem.Biol., 19, 2023
7M5D
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BU of 7m5d by Molmil
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Zhang, J.
登録日2021-03-23
公開日2022-10-19
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
To Be Published
4U27
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BU of 4u27 by Molmil
Crystal structure of the E. coli ribosome bound to flopristin and linopristin.
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Noeske, J, Huang, J, Olivier, N.B, Giacobbe, R.A, Zambrowski, M, Cate, J.H.D.
登録日2014-07-16
公開日2014-07-30
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Synergy of streptogramin antibiotics occurs independently of their effects on translation.
Antimicrob.Agents Chemother., 58, 2014
4U26
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BU of 4u26 by Molmil
Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Noeske, J, Huang, J, Olivier, N.B, Giacobbe, R.A, Zambrowski, M, Cate, J.H.D.
登録日2014-07-16
公開日2014-07-30
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Synergy of streptogramin antibiotics occurs independently of their effects on translation.
Antimicrob.Agents Chemother., 58, 2014
8G7R
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BU of 8g7r by Molmil
Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Rybak, M.Y, Gagnon, M.G.
登録日2023-02-16
公開日2024-03-06
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance.
Nat.Struct.Mol.Biol., 31, 2024
8EYT
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BU of 8eyt by Molmil
30S_delta_ksgA+KsgA complex
分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者Sun, J, Kinman, L.F, Jahagirdar, D, Ortega, J, Davis, J.H.
登録日2022-10-28
公開日2023-09-06
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献KsgA facilitates ribosomal small subunit maturation by proofreading a key structural lesion.
Nat.Struct.Mol.Biol., 30, 2023
5J5B
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BU of 5j5b by Molmil
Structure of the WT E coli ribosome bound to tetracycline
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 1,4-DIAMINOBUTANE, ...
著者Cocozaki, A, Ferguson, A.
登録日2016-04-01
公開日2016-07-27
最終更新日2018-08-15
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Proc.Natl.Acad.Sci.USA, 113, 2016
8BHJ
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BU of 8bhj by Molmil
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
分子名称: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
著者Koziej, L, Glatt, S.
登録日2022-10-31
公開日2023-08-16
実験手法ELECTRON MICROSCOPY (2.81 Å)
主引用文献Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
7AF3
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BU of 7af3 by Molmil
Bacterial 30S ribosomal subunit assembly complex state M (head domain)
分子名称: 16S rRNA (head), 30S ribosomal protein S10, 30S ribosomal protein S13, ...
著者Schedlbauer, A, Iturrioz, I, Ochoa-Lizarralde, B, Diercks, T, Lopez-Alonso, J, Kaminishi, T, Capuni, R, Astigarraga, E, Gil-Carton, D, Fucini, P, Connell, S.R.
登録日2020-09-19
公開日2021-07-07
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.82 Å)
主引用文献A conserved rRNA switch is central to decoding site maturation on the small ribosomal subunit.
Sci Adv, 7, 2021
7BOH
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BU of 7boh by Molmil
Complete Bacterial 30S ribosomal subunit assembly complex state E (+RbfA)(Consensus Refinement)
分子名称: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ...
著者Schedlbauer, A, Iturrioz, I, Ochoa-Lizarralde, B, Diercks, T, Kaminishi, T, Capuni, R, Astigarraga, E, Gil-Carton, D, Fucini, P, Connell, S.
登録日2021-01-25
公開日2021-12-08
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.82 Å)
主引用文献A conserved rRNA switch is central to decoding site maturation on the small ribosomal subunit.
Sci Adv, 7, 2021
8BHN
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BU of 8bhn by Molmil
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
分子名称: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
著者Koziej, L, Glatt, S.
登録日2022-10-31
公開日2023-08-16
実験手法ELECTRON MICROSCOPY (2.85 Å)
主引用文献Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
6Y69
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Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Wieland, M, Wilson, D.N.
登録日2020-02-26
公開日2020-07-01
最終更新日2023-11-08
実験手法ELECTRON MICROSCOPY (2.86 Å)
主引用文献Tetracenomycin X inhibits translation by binding within the ribosomal exit tunnel.
Nat.Chem.Biol., 16, 2020
8BGH
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BU of 8bgh by Molmil
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation
分子名称: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
著者Koziej, L, Glatt, S.
登録日2022-10-27
公開日2023-08-16
実験手法ELECTRON MICROSCOPY (2.88 Å)
主引用文献Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
7BOE
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BU of 7boe by Molmil
Bacterial 30S ribosomal subunit assembly complex state M (Consensus refinement)
分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者Schedlbauer, A, Iturrioz, I, Ochoa-Lizarralde, B, Diercks, T, Lopez-Alonso, J, Kaminishi, T, Capuni, R, Astigarraga, E, Gil-Carton, D, Fucini, P, Connell, S.R.
登録日2021-01-25
公開日2021-12-08
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献A conserved rRNA switch is central to decoding site maturation on the small ribosomal subunit.
Sci Adv, 7, 2021
4V9O
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BU of 4v9o by Molmil
Control of ribosomal subunit rotation by elongation factor G
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Pulk, A, Cate, J.H.D.
登録日2013-05-03
公開日2014-07-09
最終更新日2014-12-17
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Control of ribosomal subunit rotation by elongation factor G.
Science, 340, 2013

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