Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1R1R
DownloadVisualize
BU of 1r1r by Molmil
RIBONUCLEOTIDE REDUCTASE R1 PROTEIN MUTANT Y730F WITH A REDUCED ACTIVE SITE FROM ESCHERICHIA COLI
Descriptor: RIBONUCLEOTIDE REDUCTASE R1 PROTEIN, RIBONUCLEOTIDE REDUCTASE R2 PROTEIN
Authors:Eriksson, M, Eklund, H.
Deposit date:1997-07-15
Release date:1998-01-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Binding of allosteric effectors to ribonucleotide reductase protein R1: reduction of active-site cysteines promotes substrate binding.
Structure, 5, 1997
7CDL
DownloadVisualize
BU of 7cdl by Molmil
holo-methanol dehydrogenase (MDH) with Cys131-Cys132 reduced from Methylococcus capsulatus (Bath)
Descriptor: CALCIUM ION, Methanol dehydrogenase [cytochrome c] subunit 2, Methanol dehydrogenase protein, ...
Authors:Chuankhayan, P, Chan, S.I, Nareddy, P.K.R, Tsai, I.K, Tsai, Y.F, Chen, K.H.-C, Yu, S.S.-F, Chen, C.J.
Deposit date:2020-06-20
Release date:2021-06-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Mechanism of Pyrroloquinoline Quinone-Dependent Hydride Transfer Chemistry from Spectroscopic and High-Resolution X-ray Structural Studies of the Methanol Dehydrogenase from Methylococcus capsulatus (Bath).
J.Am.Chem.Soc., 143, 2021
1R2C
DownloadVisualize
BU of 1r2c by Molmil
PHOTOSYNTHETIC REACTION CENTER BLASTOCHLORIS VIRIDIS (ATCC)
Descriptor: 15-cis-1,2-dihydroneurosporene, BACTERIOCHLOROPHYLL B, BACTERIOPHEOPHYTIN B, ...
Authors:Baxter, R.H, Ponomarenko, N, Pahl, R, Srajer, V, Moffat, K, Norris, J.R.
Deposit date:2003-09-26
Release date:2004-04-27
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Time-resolved crystallographic studies of light-induced structural changes in the photosynthetic reaction center.
Proc.Natl.Acad.Sci.USA, 101, 2004
1R1L
DownloadVisualize
BU of 1r1l by Molmil
Structure of dimeric antithrombin complexed with a P14-P9 reactive loop peptide and an exogenous tripeptide (formyl-norleucine-LF)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antithrombin P14-P9 peptide, Antithrombin-III, ...
Authors:Zhou, A, Huntington, J.A, Lomas, D.A, Stein, P.E, Carrell, R.W.
Deposit date:2003-09-24
Release date:2004-10-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Serpins and the design of peptides to block intermolecular beta-linkages
To be Published
1R2E
DownloadVisualize
BU of 1r2e by Molmil
Human Bcl-XL containing a Glu to Leu mutation at position 92
Descriptor: Apoptosis regulator Bcl-X
Authors:O'Neill, J.W, Manion, M.K, Giedt, C.D, Kim, K.M, Zhang, K.Y, Hockenbery, D.M.
Deposit date:2003-09-26
Release date:2004-02-03
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Bcl-XL mutations suppress cellular sensitivity to antimycin A.
J.Biol.Chem., 279, 2004
7CFX
DownloadVisualize
BU of 7cfx by Molmil
NAD-soaked Holo-methanol dehydrogenase (MDH) from Methylococcus capsulatus (Bath)
Descriptor: CALCIUM ION, Methanol dehydrogenase [cytochrome c] subunit 2, Methanol dehydrogenase protein, ...
Authors:Chuankhayan, P, Chan, S.I, Nareddy, P.K.R, Tsai, I.K, Tsai, Y.F, Chen, K.H.-C, Yu, S.S.-F, Chen, C.J.
Deposit date:2020-06-29
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mechanism of Pyrroloquinoline Quinone-Dependent Hydride Transfer Chemistry from Spectroscopic and High-Resolution X-ray Structural Studies of the Methanol Dehydrogenase from Methylococcus capsulatus (Bath).
J.Am.Chem.Soc., 143, 2021
7CED
DownloadVisualize
BU of 7ced by Molmil
Apo-methanol dehydrogenase (MDH) from Methylococcus capsulatus (Bath)
Descriptor: Methanol dehydrogenase [cytochrome c] subunit 2, Methanol dehydrogenase protein, large subunit
Authors:Chuankhayan, P, Chan, S.I, Nareddy, P.K.R, Tsai, I.K, Tsai, Y.F, Chen, K.H.-C, Yu, S.S.-F, Chen, C.J.
Deposit date:2020-06-22
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mechanism of Pyrroloquinoline Quinone-Dependent Hydride Transfer Chemistry from Spectroscopic and High-Resolution X-ray Structural Studies of the Methanol Dehydrogenase from Methylococcus capsulatus (Bath).
J.Am.Chem.Soc., 143, 2021
1R2T
DownloadVisualize
BU of 1r2t by Molmil
CRYSTAL STRUCTURE OF RABBIT MUSCLE TRIOSEPHOSPHATE ISOMERASE
Descriptor: Triosephosphate isomerase
Authors:Aparicio, R, Ferreira, S.T, Polikarpov, I.
Deposit date:2003-09-29
Release date:2003-12-23
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Closed conformation of the active site loop of rabbit muscle triosephosphate isomerase in the absence of substrate: evidence of conformational heterogeneity.
J.Mol.Biol., 334, 2003
7CE9
DownloadVisualize
BU of 7ce9 by Molmil
PQQ-soaked Apo-methanol dehydrogenase (MDH) from Methylococcus capsulatus (Bath)
Descriptor: CALCIUM ION, Methanol dehydrogenase [cytochrome c] subunit 2, Methanol dehydrogenase protein, ...
Authors:Chuankhayan, P, Chan, S.I, Nareddy, P.K.R, Tsai, I.K, Tsai, Y.F, Chen, K.H.-C, Yu, S.S.-F, Chen, C.J.
Deposit date:2020-06-22
Release date:2021-06-30
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Mechanism of Pyrroloquinoline Quinone-Dependent Hydride Transfer Chemistry from Spectroscopic and High-Resolution X-ray Structural Studies of the Methanol Dehydrogenase from Methylococcus capsulatus (Bath).
J.Am.Chem.Soc., 143, 2021
7CE5
DownloadVisualize
BU of 7ce5 by Molmil
Methanol-PQQ bound methanol dehydrogenase (MDH) from Methylococcus capsulatus (Bath)
Descriptor: CALCIUM ION, METHANOL, Methanol dehydrogenase [cytochrome c] subunit 2, ...
Authors:Chuankhayan, P, Chan, S.I, Nareddy, P.K.R, Tsai, I.K, Tsai, Y.F, Chen, K.H.-C, Yu, S.S.-F, Chen, C.J.
Deposit date:2020-06-22
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mechanism of Pyrroloquinoline Quinone-Dependent Hydride Transfer Chemistry from Spectroscopic and High-Resolution X-ray Structural Studies of the Methanol Dehydrogenase from Methylococcus capsulatus (Bath).
J.Am.Chem.Soc., 143, 2021
1R49
DownloadVisualize
BU of 1r49 by Molmil
Human topoisomerase I (Topo70) double mutant K532R/Y723F
Descriptor: 5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*TP*AP*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3', 5'-D(P*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*TP*AP*AP*GP*TP*CP*TP*TP*TP*TP*T)-3', DNA topoisomerase I
Authors:Interthal, H, Quigley, P.M, Hol, W.G, Champoux, J.J.
Deposit date:2003-10-03
Release date:2003-12-16
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.13 Å)
Cite:The role of lysine 532 in the catalytic mechanism of human topoisomerase I.
J.Biol.Chem., 279, 2004
1R4U
DownloadVisualize
BU of 1r4u by Molmil
URATE OXIDASE FROM ASPERGILLUS FLAVUS COMPLEXED WITH ITS INHIBITOR OXONIC ACID
Descriptor: OXONIC ACID, Uricase
Authors:Retailleau, P, Colloc'h, N, Prange, T.
Deposit date:2003-10-08
Release date:2004-03-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Complexed and ligand-free high-resolution structures of urate oxidase (Uox) from Aspergillus flavus: a reassignment of the active-site binding mode.
Acta Crystallogr.,Sect.D, 60, 2004
1R5I
DownloadVisualize
BU of 1r5i by Molmil
Crystal structure of the MAM-MHC complex
Descriptor: HLA class II histocompatibility antigen, DR alpha chain, DRB1-1 beta chain, ...
Authors:Zhao, Y, Li, Z, Drozd, S.J, Guo, Y, Mourad, W, Li, H.
Deposit date:2003-10-10
Release date:2004-03-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of Mycoplasma arthritidis mitogen complexed with HLA-DR1 reveals a novel superantigen fold and a dimerized superantigen-MHC complex.
Structure, 12, 2004
1RDW
DownloadVisualize
BU of 1rdw by Molmil
Actin Crystal Dynamics: Structural Implications for F-actin Nucleation, Polymerization and Branching Mediated by the Anti-parallel Dimer
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Reutzel, R, Yoshioka, C, Govindasamy, L, Yarmola, E.G, Agbandje-Mckenna, M, Bubb, M.R, Mckenna, R.
Deposit date:2003-11-06
Release date:2003-12-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Actin crystal dynamics: structural implications for F-actin nucleation, polymerization, and branching mediated by the anti-parallel dimer.
J.Struct.Biol., 146, 2004
1R8Y
DownloadVisualize
BU of 1r8y by Molmil
Crystal Structure of Mouse Glycine N-Methyltransferase (Monoclinic Form)
Descriptor: BETA-MERCAPTOETHANOL, glycine N-methyltransferase
Authors:Pakhomova, S, Luka, Z, Wagner, C, Newcomer, M.E.
Deposit date:2003-10-28
Release date:2004-09-21
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:Glycine N-methyltransferases: a comparison of the crystal structures and kinetic properties of recombinant human, mouse and rat enzymes.
Proteins, 57, 2004
1SA5
DownloadVisualize
BU of 1sa5 by Molmil
Rat protein farnesyltransferase complexed with FPP and BMS-214662
Descriptor: 3-BENZYL-1-(1H-IMIDAZOL-4-YLMETHYL)-4-(THIEN-2-YLSULFONYL)-2,3,4,5-TETRAHYDRO-1H-1,4-BENZODIAZEPINE-7-CARBONITRILE, ACETIC ACID, FARNESYL DIPHOSPHATE, ...
Authors:Reid, T.S, Beese, L.S.
Deposit date:2004-02-06
Release date:2004-06-08
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structures of the Anticancer Clinical Candidates R115777 (Tipifarnib) and BMS-214662 Complexed with Protein Farnesyltransferase Suggest a Mechanism of FTI Selectivity.
Biochemistry, 43, 2004
1S22
DownloadVisualize
BU of 1s22 by Molmil
Absolute Stereochemistry of Ulapualide A
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, Actin, ...
Authors:Allingham, J.S, Tanaka, J, Marriott, G, Rayment, I.
Deposit date:2004-01-07
Release date:2004-02-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Absolute stereochemistry of ulapualide A
Org.Lett., 6, 2004
7CJX
DownloadVisualize
BU of 7cjx by Molmil
UDP-glucuronosyltransferase 2B15 C-terminal domain-L446S
Descriptor: L(+)-TARTARIC ACID, UDP-glucuronosyltransferase 2B15
Authors:Wang, C.Y, Zhang, L.
Deposit date:2020-07-14
Release date:2021-07-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.986414 Å)
Cite:Structure of UDP-glucuronosyltransferase 2B15 C-terminal domain L446S at 1.99 Angstroms resolution
To Be Published
7CJ2
DownloadVisualize
BU of 7cj2 by Molmil
Crystal structure of the Fab antibody complexed with human YKL-40
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase 3-like 1 (Cartilage glycoprotein-39), isoform CRA_a, ...
Authors:Choi, S, Na, J.H, Lee, S.J, Woo, J.R, Kim, D.Y, Hong, J.T, Lee, W.K.
Deposit date:2020-07-09
Release date:2021-07-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of the Fab antibody complexed with human YKL-40
To Be Published
1S60
DownloadVisualize
BU of 1s60 by Molmil
Aminoglycoside N-Acetyltransferase AAC(6')-Iy in Complex with CoA and N-terminal His(6)-tag (crystal form 2)
Descriptor: COENZYME A, SULFATE ION, aminoglycoside 6'-N-acetyltransferase
Authors:Vetting, M.W, Magnet, S, Nieves, E, Roderick, S.L, Blanchard, J.S.
Deposit date:2004-01-22
Release date:2004-05-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3 Å)
Cite:A bacterial acetyltransferase capable of regioselective N-acetylation of antibiotics and histones
Chem.Biol., 11, 2004
7CP5
DownloadVisualize
BU of 7cp5 by Molmil
Bovine heart cytochrome c oxidase in a catalytic intermediate of E at 1.76 angstrom resolution
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
Authors:Tsukihara, T, Shimada, A.
Deposit date:2020-08-06
Release date:2021-07-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Critical roles of the Cu B site in efficient proton pumping as revealed by crystal structures of mammalian cytochrome c oxidase catalytic intermediates.
J.Biol.Chem., 297, 2021
7CH6
DownloadVisualize
BU of 7ch6 by Molmil
Cryo-EM structure of E.coli MlaFEB with AMPPNP
Descriptor: Lipid asymmetry maintenance ABC transporter permease subunit MlaE, Lipid asymmetry maintenance protein MlaB, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Zhou, C, Shi, H, Zhang, M, Huang, Y.
Deposit date:2020-07-05
Release date:2021-08-04
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural Insight into Phospholipid Transport by the MlaFEBD Complex from P. aeruginosa.
J.Mol.Biol., 433, 2021
1SGH
DownloadVisualize
BU of 1sgh by Molmil
Moesin FERM domain bound to EBP50 C-terminal peptide
Descriptor: Ezrin-radixin-moesin binding phosphoprotein 50, Moesin
Authors:Finnerty, C.M, Chambers, D, Ingraffea, J, Faber, H.R, Karplus, P.A, Bretscher, A.
Deposit date:2004-02-23
Release date:2004-06-29
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:The EBP50-moesin interaction involves a binding site regulated by direct masking on the FERM domain
J.Cell.Sci., 117, 2004
7CQB
DownloadVisualize
BU of 7cqb by Molmil
Crystal structure of mutant of a Petase mutant
Descriptor: Poly(ethylene terephthalate) hydrolase
Authors:Han, X, Liu, W.D, Zheng, Y.Y, Chen, C.C, Guo, R.T.
Deposit date:2020-08-09
Release date:2021-08-11
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Crystal structure of mutant of a Petase mutant
to be published
7DSX
DownloadVisualize
BU of 7dsx by Molmil
Structure of a human NHE1-CHP1 complex under pH 7.5, bound by cariporide
Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, Calcineurin B homologous protein 1, N-[bis(azanyl)methylidene]-3-methylsulfonyl-4-propan-2-yl-benzamide, ...
Authors:Dong, Y, Gao, Y, Li, B, Zhang, X.C, Zhao, Y.
Deposit date:2021-01-03
Release date:2021-06-23
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure and mechanism of the human NHE1-CHP1 complex.
Nat Commun, 12, 2021

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon